============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1.pdb ============================================================================= Atom's 1272 N4 residue renamed to RC3 Atom's 1271 O2 residue renamed to RC3 Atom's 1270 C4 residue renamed to RC3 Atom's 1269 N3 residue renamed to RC3 Atom's 1268 C2 residue renamed to RC3 Atom's 1267 N1 residue renamed to RC3 Atom's 1266 C6 residue renamed to RC3 Atom's 1265 C5 residue renamed to RC3 Atom's 1264 C1' residue renamed to RC3 Atom's 1263 O2' residue renamed to RC3 Atom's 1262 C2' residue renamed to RC3 Atom's 1261 O3' residue renamed to RC3 Atom's 1260 C3' residue renamed to RC3 Atom's 1259 O4' residue renamed to RC3 Atom's 1258 C4' residue renamed to RC3 Atom's 1257 C5' residue renamed to RC3 Atom's 1256 O5' residue renamed to RC3 Atom's 1255 OP2 residue renamed to RC3 Atom's 1254 OP1 residue renamed to RC3 Atom's 1253 P residue renamed to RC3 Missing atom added: ATOM 23 H5'1 A A 1 3.847 7.092 -3.056 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 1 5.487 6.777 -2.253 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 1 3.396 5.944 -1.272 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 1 4.964 3.693 -2.230 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 1 1.190 3.655 -2.768 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 1 3.213 2.252 -1.483 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 1 2.585 4.182 0.046 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 1 3.913 4.180 -5.168 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 1 3.616 -0.024 -7.649 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 1 2.701 -1.445 -7.405 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 1 0.087 -1.159 -3.443 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 2 3.491 2.464 0.949 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 2 4.696 1.890 2.234 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 2 2.847 0.461 1.820 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 2 5.457 -0.620 0.678 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 2 2.145 -1.309 -1.061 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 2 4.295 -2.629 0.112 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 2 2.724 -1.996 2.011 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 2 4.941 0.817 -1.491 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 2 4.288 -2.960 -5.007 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 2 6.346 0.866 -3.521 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 3 4.088 -3.659 2.702 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 3 5.230 -4.291 4.017 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 3 4.006 -5.870 2.643 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 3 6.916 -5.721 1.770 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 3 4.138 -6.297 -0.776 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 3 6.438 -7.500 0.216 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 3 4.565 -8.091 1.855 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 3 6.106 -3.568 0.198 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 3 7.229 -5.706 -4.409 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 3 7.639 -2.347 -1.305 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 4 6.426 -9.511 2.089 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 4 7.603 -10.356 3.246 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 4 7.148 -11.388 1.117 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 4 9.894 -10.071 1.105 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 4 7.770 -10.165 -2.041 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 4 10.230 -10.983 -1.083 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 4 8.539 -12.748 -0.336 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 4 8.447 -7.417 0.291 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 4 11.353 -4.667 -2.521 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 4 12.061 -4.931 -4.053 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 4 11.025 -9.264 -5.714 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 5 10.840 -13.506 -0.258 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 5 11.946 -14.544 0.807 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 5 12.180 -14.508 -1.637 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 5 14.282 -12.618 -0.421 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 5 12.601 -11.896 -3.779 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 5 15.130 -12.308 -2.662 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 5 14.157 -14.636 -3.082 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 5 12.368 -10.762 -0.480 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 5 13.454 -6.172 -0.672 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 5 14.046 -6.003 -2.270 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 5 12.554 -8.279 0.571 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 6 16.592 -14.768 -2.838 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 6 18.067 -15.495 -1.981 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 6 18.450 -14.497 -4.108 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 6 19.497 -12.739 -1.848 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 6 18.101 -11.213 -5.045 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 6 20.421 -11.295 -3.531 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 6 20.435 -13.400 -4.978 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 6 16.650 -11.479 -1.689 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 6 16.852 -6.777 -0.365 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 6 17.560 -5.403 -1.092 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 6 19.849 -6.553 -5.099 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 7 22.600 -12.819 -4.148 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 7 24.157 -13.320 -3.278 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 7 24.289 -11.427 -4.723 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 7 24.398 -10.616 -1.805 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 7 22.723 -8.374 -4.389 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 7 24.801 -8.357 -2.563 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 7 25.709 -9.508 -4.667 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 7 21.354 -10.551 -1.761 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 7 20.772 -3.874 -0.278 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 7 23.146 -4.008 -3.025 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 7 22.584 -3.239 -1.650 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 8 27.367 -8.716 -3.242 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 8 29.020 -9.070 -2.483 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 8 28.456 -6.782 -2.962 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 8 28.217 -7.358 0.027 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 8 25.900 -4.870 -1.702 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 8 27.786 -5.001 0.335 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 8 29.112 -4.738 -1.839 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 8 25.602 -8.170 -0.587 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 8 23.180 -4.543 2.248 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 8 23.991 -8.922 1.128 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 9 30.282 -4.186 0.064 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 9 31.957 -4.287 0.850 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 9 30.603 -2.344 1.288 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 9 30.677 -4.230 3.673 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 9 27.545 -2.196 2.889 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 9 29.440 -2.566 4.905 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 9 30.481 -0.914 3.258 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 9 28.519 -5.527 2.479 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 9 25.013 -4.562 6.198 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 9 27.347 -7.448 3.495 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 10 31.647 -0.857 5.200 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 10 33.319 -0.780 5.993 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 10 31.533 0.331 7.119 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 10 32.228 -2.375 8.432 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 10 28.684 -0.991 8.490 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 10 30.702 -1.782 10.216 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 10 31.258 0.632 9.544 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 10 30.251 -3.685 6.558 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 10 25.958 -5.980 11.399 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 10 26.550 -2.500 12.259 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 10 26.188 -4.058 12.749 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 11 32.704 -0.052 11.664 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 11 34.363 -0.258 12.465 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 11 32.468 -0.229 13.909 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 11 33.643 -3.006 13.670 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 11 29.891 -2.511 14.093 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 11 32.042 -3.698 15.352 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 11 32.094 -1.224 16.033 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 11 31.947 -3.489 11.202 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 11 30.510 -8.144 10.774 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 11 29.519 -9.138 11.746 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 11 28.059 -6.845 15.645 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 12 33.393 -2.586 17.724 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 12 34.949 -3.227 18.500 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 12 32.978 -4.038 19.470 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 12 34.582 -6.138 18.145 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 12 30.765 -6.311 18.046 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 12 32.966 -7.730 18.966 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 12 32.478 -5.946 20.729 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 12 33.205 -5.494 15.436 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 12 30.397 -11.705 14.614 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 12 29.576 -10.761 18.024 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 12 29.891 -11.963 16.903 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 13 33.840 -7.797 21.783 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 13 35.384 -8.466 22.561 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 13 33.564 -9.949 22.553 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 13 35.792 -10.824 20.752 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 13 32.181 -11.529 19.792 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 13 34.606 -12.802 20.311 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 13 33.495 -12.404 22.540 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 13 34.647 -9.056 18.549 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 13 35.290 -10.825 14.038 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 13 34.727 -12.237 13.260 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 13 32.161 -14.932 16.223 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 14 35.212 -14.108 22.564 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 14 36.714 -14.767 23.425 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 14 35.539 -16.292 22.029 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 14 38.141 -15.198 20.782 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 14 35.200 -16.149 18.583 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 14 37.914 -16.721 18.998 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 14 36.626 -18.169 20.618 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 14 36.905 -13.292 19.888 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 14 36.698 -13.854 14.721 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 14 37.715 -11.428 18.484 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 15 39.202 -19.348 20.882 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 15 40.762 -19.572 21.858 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 15 40.341 -20.740 19.718 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 15 42.123 -18.300 19.211 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 15 39.499 -19.415 16.657 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 15 42.277 -18.986 16.921 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 15 41.847 -21.326 17.808 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 15 40.329 -16.848 18.971 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 15 39.802 -12.868 16.490 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 15 39.505 -13.460 14.911 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 15 40.245 -14.159 18.711 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 16 46.888 -19.584 19.298 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 16 46.416 -17.793 19.356 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 16 48.041 -18.498 17.723 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 16 45.157 -18.124 16.634 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 16 47.522 -20.677 15.061 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 16 45.996 -18.364 14.399 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 16 48.193 -17.481 15.255 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 16 44.434 -20.145 16.792 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 16 44.611 -23.399 12.737 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 16 42.402 -21.443 16.255 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 17 47.273 -15.115 14.194 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 17 46.133 -13.655 14.196 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 17 46.874 -14.426 12.070 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 17 43.980 -14.856 12.717 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 17 45.781 -17.450 10.590 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 17 43.621 -15.633 10.499 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 17 45.670 -14.300 9.863 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 17 44.086 -16.804 13.695 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 17 42.786 -21.011 10.925 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 17 42.468 -18.388 14.681 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 18 43.935 -12.589 9.072 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 18 42.637 -11.278 9.249 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 18 42.716 -12.614 7.226 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 18 40.399 -13.433 8.970 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 18 42.300 -16.044 6.936 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 18 39.736 -14.953 7.267 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 18 40.970 -13.406 5.686 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 18 41.828 -14.922 10.272 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 18 40.506 -18.776 12.653 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 18 40.293 -19.924 11.401 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 18 41.232 -16.276 12.534 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 19 38.867 -13.497 5.536 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 19 37.208 -12.673 5.460 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 19 37.266 -14.856 4.591 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 19 35.716 -14.645 7.164 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 19 37.690 -17.802 6.355 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 19 35.101 -16.938 6.885 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 19 35.510 -16.508 4.410 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 19 38.317 -15.054 8.725 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 19 37.684 -17.498 12.912 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 19 37.147 -19.083 13.254 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 19 35.943 -21.393 9.275 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 20 33.273 -16.766 4.956 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 20 31.525 -16.152 5.002 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 20 31.780 -18.449 5.438 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 20 30.923 -16.878 7.851 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 20 33.212 -19.901 8.235 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 20 30.719 -18.963 9.021 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 20 30.409 -19.964 6.696 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 20 33.598 -16.402 8.291 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 20 34.025 -18.858 12.856 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 20 34.457 -15.123 10.220 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 21 28.337 -19.693 8.280 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 21 26.634 -19.033 8.599 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 21 27.324 -20.552 10.204 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 21 27.113 -17.708 11.223 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 21 29.713 -20.076 12.645 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 21 27.556 -18.529 13.408 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 21 26.608 -20.719 12.520 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 21 29.699 -17.486 10.278 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 21 32.358 -14.031 12.087 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 21 32.593 -14.558 13.699 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 21 31.038 -15.143 10.133 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 22 25.378 -18.919 14.128 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 22 23.721 -18.156 14.455 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 22 25.145 -18.050 16.282 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 22 24.688 -15.348 14.921 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 22 27.968 -16.147 16.672 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 22 25.862 -14.320 16.700 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 22 25.110 -16.316 18.071 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 22 26.859 -16.133 13.357 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 22 29.336 -12.758 11.177 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 22 30.096 -11.960 12.487 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 22 27.713 -14.798 11.167 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 23 23.760 -14.487 18.548 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 23 22.030 -13.867 18.785 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 23 23.848 -12.774 19.952 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 23 23.019 -11.154 17.462 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 23 26.628 -11.222 18.693 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 23 24.523 -9.443 18.151 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 23 24.123 -10.322 20.497 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 23 24.771 -12.727 16.113 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 23 28.307 -9.174 14.724 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 23 25.325 -12.517 13.715 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 24 23.105 -8.605 20.190 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 24 21.502 -7.847 20.731 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 24 23.620 -6.581 20.708 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 24 22.016 -6.171 18.049 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 24 25.837 -6.097 18.134 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 24 23.634 -4.467 17.422 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 24 23.948 -4.098 19.919 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 24 23.142 -8.047 17.023 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 24 24.116 -8.796 12.466 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 24 25.451 -7.757 12.203 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 24 22.725 -9.228 14.626 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 25 22.896 -2.738 19.275 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 25 21.566 -1.643 19.959 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 25 23.433 -0.670 18.741 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 25 20.925 -1.540 16.951 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 25 24.424 -1.298 15.493 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 25 21.847 -0.248 15.068 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 25 22.862 1.279 16.854 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 25 22.031 -3.948 16.322 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 25 21.789 -5.910 11.849 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 25 22.446 -5.436 10.345 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 25 24.834 -1.341 10.713 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 26 18.528 2.413 17.324 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 26 17.270 1.892 18.582 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 26 16.340 2.593 16.564 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 26 16.869 -0.470 17.216 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 26 16.437 0.664 13.609 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 26 15.261 -1.148 15.478 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 26 14.073 1.056 15.945 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 26 17.693 -1.948 15.950 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 26 20.278 -4.272 12.511 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 26 20.664 -3.878 10.894 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 26 18.659 0.231 9.591 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 27 12.079 -0.740 20.229 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 27 12.086 -2.316 19.255 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 27 9.956 -1.418 19.608 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 27 11.653 -0.400 17.042 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 27 8.625 1.487 18.377 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 27 9.523 0.336 15.936 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 27 8.419 -1.633 17.124 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 27 12.089 1.550 17.700 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 27 9.069 5.654 16.658 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 27 13.183 3.640 16.967 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 28 9.464 -4.072 14.220 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 28 11.016 -4.094 13.210 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 28 9.304 -3.712 11.839 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 28 11.610 -1.867 12.459 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 28 8.335 -0.278 11.360 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 28 11.021 -0.521 10.502 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 28 9.880 -2.635 9.624 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 28 10.888 -0.282 14.083 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 28 8.581 5.837 11.995 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 28 7.254 3.472 9.577 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 28 7.786 5.019 9.930 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 29 11.786 -0.415 10.949 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 29 13.321 0.027 10.012 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 29 13.386 1.617 11.030 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 29 15.042 -0.175 9.657 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 29 16.477 1.190 12.916 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 29 16.923 1.367 10.127 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 29 15.103 3.117 10.574 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 29 15.721 -2.088 11.519 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 29 22.295 -1.001 13.172 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 29 20.773 2.297 13.205 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 29 22.130 1.344 12.978 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 30 16.454 3.057 9.107 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 30 16.406 3.972 7.496 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 30 18.486 4.066 8.275 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 30 17.623 2.267 5.864 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 30 20.762 1.417 7.792 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 30 19.960 2.064 5.201 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 30 20.258 4.328 6.390 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 30 17.465 -0.097 7.673 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 30 18.703 -4.320 5.544 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 30 20.159 -4.877 4.846 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 30 23.521 -1.517 4.948 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 31 20.185 5.133 4.215 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 31 19.344 6.308 3.054 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 31 21.678 5.576 2.734 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 31 19.692 3.582 1.266 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 31 23.052 2.479 2.666 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 31 21.648 2.517 0.258 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 31 22.694 4.866 0.469 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 31 19.530 2.024 3.629 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 31 19.359 -2.845 3.206 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 31 20.485 -3.992 2.629 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 31 24.439 -1.887 1.036 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 32 22.066 4.464 -1.699 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 32 21.326 5.415 -3.108 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 32 23.080 3.702 -3.428 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 32 20.265 2.334 -3.709 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 32 23.346 0.526 -2.330 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 32 21.464 0.311 -4.406 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 32 23.228 1.973 -5.265 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 32 20.279 1.886 -1.306 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 32 18.150 -1.672 0.951 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 32 19.179 -2.994 0.599 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 32 18.323 0.829 0.231 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 33 22.044 1.323 -7.183 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 33 21.140 1.885 -8.701 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 33 22.301 -0.262 -8.674 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 33 19.282 -0.693 -8.112 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 33 21.985 -2.925 -6.584 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 33 19.747 -3.097 -8.239 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 33 21.679 -2.354 -9.773 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 33 19.982 -0.337 -5.429 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 33 18.785 -5.130 -3.801 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 33 18.384 -0.562 -3.560 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 34 19.860 -3.136 -11.233 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 34 18.699 -2.822 -12.642 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 34 19.170 -5.104 -12.030 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 34 16.405 -4.293 -11.027 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 34 18.591 -6.729 -9.073 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 34 16.113 -6.568 -10.310 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 34 17.803 -7.099 -12.153 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 34 17.754 -3.191 -8.514 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 34 14.666 -7.412 -4.068 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 34 15.878 -9.583 -6.718 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 34 14.755 -9.273 -5.516 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 35 15.559 -7.675 -12.933 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 35 14.262 -7.490 -14.244 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 35 14.235 -9.420 -12.757 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 35 12.076 -7.471 -11.925 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 35 14.001 -9.501 -9.326 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 35 11.415 -9.086 -10.259 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 35 12.485 -10.777 -11.852 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 35 14.147 -6.195 -10.441 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 35 11.969 -6.949 -5.777 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 35 13.736 -4.219 -9.019 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 36 10.062 -10.815 -11.959 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 36 8.535 -10.756 -13.009 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 36 8.307 -11.763 -10.869 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 36 6.998 -9.019 -10.969 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 36 8.603 -10.287 -7.772 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 36 6.177 -9.406 -8.770 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 36 6.367 -11.870 -9.388 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 36 9.723 -7.816 -10.278 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 36 9.342 -3.750 -7.591 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 36 8.713 -3.452 -6.031 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 36 6.901 -7.408 -4.114 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 37 4.213 -11.031 -9.282 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 37 2.557 -10.933 -10.107 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 37 2.541 -10.636 -7.766 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 37 2.087 -8.031 -9.301 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 37 3.870 -8.033 -5.945 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 37 1.647 -6.955 -7.229 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 37 0.966 -9.269 -6.424 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 37 5.035 -7.642 -9.439 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 37 6.528 -2.993 -9.201 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 37 6.416 -1.807 -7.978 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 37 4.060 -3.448 -4.189 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 38 -0.136 -6.734 -7.415 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 38 -1.685 -6.163 -8.257 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 38 -0.725 -4.373 -7.406 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 38 -1.347 -5.021 -10.266 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 38 1.551 -2.655 -9.632 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 38 -0.992 -2.669 -10.847 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 38 -1.468 -2.188 -8.375 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 38 0.836 -5.945 -11.181 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 38 4.131 -1.394 -15.126 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 38 2.988 0.521 -12.258 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 38 3.394 0.470 -13.880 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 39 -4.198 -6.446 -8.626 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 39 -5.447 -6.318 -9.988 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 39 -6.168 -7.642 -8.233 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 39 -7.184 -4.799 -8.857 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 39 -7.539 -6.067 -5.303 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 39 -9.194 -5.265 -7.409 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 39 -8.683 -7.748 -7.960 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 39 -5.466 -3.535 -6.606 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 39 -10.813 -1.125 -3.039 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 39 -11.706 -4.553 -3.844 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 39 -12.185 -2.984 -3.518 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 40 -10.258 -7.213 -8.873 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 40 -11.119 -7.611 -10.466 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 40 -12.295 -7.533 -8.292 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 40 -12.427 -4.735 -9.723 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 40 -12.374 -5.084 -5.919 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 40 -13.995 -4.031 -7.956 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 40 -14.597 -6.535 -7.862 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 40 -10.343 -4.076 -8.575 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 40 -9.062 0.318 -7.421 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 40 -10.067 0.650 -6.075 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 40 -8.886 -1.822 -8.898 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 41 -16.210 -5.441 -9.074 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 41 -17.272 -5.716 -10.567 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 41 -18.129 -4.647 -8.515 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 41 -17.080 -2.425 -10.477 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 41 -16.949 -2.062 -6.681 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 41 -18.009 -0.782 -8.922 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 41 -19.678 -2.658 -8.354 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 41 -14.746 -2.766 -9.315 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 41 -14.154 1.772 -6.842 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 41 -12.704 -1.452 -9.772 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 42 -20.750 -1.065 -9.957 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 42 -21.709 -0.819 -11.524 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 42 -21.859 0.865 -9.806 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 42 -19.930 1.776 -12.033 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 42 -19.421 2.793 -8.401 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 42 -19.812 3.912 -10.899 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 42 -22.144 3.275 -10.031 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 42 -17.746 0.412 -10.698 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 42 -13.379 2.596 -10.941 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 42 -12.794 4.078 -10.326 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 42 -16.224 6.493 -8.088 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 43 -22.335 4.824 -11.777 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 43 -23.119 5.329 -13.378 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 43 -22.310 7.068 -11.943 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 43 -20.363 6.569 -14.277 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 43 -19.145 7.709 -10.847 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 43 -19.129 8.502 -13.512 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 43 -21.388 9.250 -12.566 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 43 -19.236 4.692 -12.639 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 43 -14.571 6.912 -12.030 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 43 -17.236 3.370 -13.231 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 44 -20.736 10.407 -14.535 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 44 -21.123 11.034 -16.234 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 44 -19.395 12.193 -15.213 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 44 -18.442 10.296 -17.446 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 44 -16.242 11.145 -14.457 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 44 -16.278 11.266 -17.238 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 44 -17.521 13.323 -16.412 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 44 -18.208 8.147 -15.327 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 44 -11.429 7.164 -15.780 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 44 -11.831 10.770 -15.577 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 44 -10.951 9.451 -16.112 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 45 -16.659 13.304 -18.514 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 45 -16.943 13.890 -20.249 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 45 -14.686 13.786 -19.584 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 45 -15.524 11.365 -21.357 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 45 -12.755 11.138 -18.728 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 45 -13.196 10.772 -21.484 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 45 -12.769 13.262 -21.173 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 45 -16.100 10.126 -19.052 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 45 -12.468 6.405 -18.926 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 45 -16.845 7.786 -18.800 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 46 -12.847 12.411 -24.456 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 46 -13.901 12.210 -25.968 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 46 -11.848 10.960 -25.835 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 46 -14.297 9.289 -25.649 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 46 -11.250 8.318 -23.579 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 46 -12.875 7.341 -25.632 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 46 -11.159 8.858 -26.765 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 46 -14.541 9.591 -23.287 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 46 -16.664 6.675 -20.241 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 46 -15.498 5.436 -20.050 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 46 -16.594 8.837 -21.697 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 47 -14.965 6.368 -29.505 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 47 -15.628 6.186 -27.785 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 47 -14.777 4.232 -28.933 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 47 -12.975 5.104 -26.720 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 47 -11.467 3.700 -29.930 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 47 -11.602 3.212 -27.174 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 47 -13.679 2.173 -28.182 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 47 -11.631 7.022 -28.242 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 47 -5.279 4.531 -29.002 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 47 -7.468 1.735 -29.768 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 47 -5.999 2.293 -29.192 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 48 -13.208 0.880 -25.721 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 48 -13.098 1.045 -23.879 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 48 -11.379 -0.222 -24.763 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 48 -10.740 1.905 -23.073 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 48 -8.494 1.466 -26.094 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 48 -8.444 1.382 -23.319 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 48 -9.237 -0.895 -24.097 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 48 -11.023 4.017 -25.282 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 48 -4.595 6.378 -24.783 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 48 -4.247 2.765 -24.920 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 48 -3.664 4.245 -24.401 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 49 -8.155 -1.234 -21.781 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 49 -8.113 -1.000 -19.944 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 49 -6.007 -0.982 -20.964 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 49 -6.631 1.420 -19.532 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 49 -4.769 1.732 -22.845 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 49 -4.468 2.248 -20.138 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 49 -3.885 -0.204 -20.478 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 49 -8.063 2.310 -21.709 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 49 -5.213 6.529 -22.775 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 49 -9.209 4.495 -21.782 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 50 -3.161 1.640 -18.190 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 50 -3.401 2.105 -16.413 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 50 -2.323 3.750 -17.631 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 50 -4.598 4.566 -16.212 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 50 -4.176 6.002 -19.690 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 50 -4.289 6.763 -17.052 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 50 -1.903 6.029 -17.503 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 50 -6.505 3.395 -18.662 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 50 -9.594 9.517 -19.001 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 50 -6.041 10.273 -18.983 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 50 -7.608 10.728 -18.611 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 51 -2.731 7.521 -15.428 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 51 -2.474 7.804 -13.614 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 51 -3.390 9.626 -14.797 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 51 -5.412 8.289 -12.976 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 51 -6.504 9.844 -16.262 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 51 -6.954 10.002 -13.534 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 51 -4.885 11.397 -14.015 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 51 -5.807 6.603 -15.104 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 51 -9.884 4.235 -15.309 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 51 -11.014 5.481 -15.629 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 51 -7.301 4.352 -14.988 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 52 -5.935 12.007 -11.749 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 52 -5.667 12.189 -9.924 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 52 -7.580 13.263 -10.932 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 52 -8.442 10.774 -9.410 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 52 -10.232 11.802 -12.586 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 52 -10.706 11.336 -9.914 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 52 -9.813 13.723 -10.090 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 52 -7.741 9.161 -11.997 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 52 -10.619 5.223 -12.352 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 52 -12.310 5.040 -12.499 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 52 -14.520 9.247 -12.386 1.00 0.00 H Missing atom added: ATOM 21 H5'1 U A 53 -10.978 13.317 -7.791 1.00 0.00 H Missing atom added: ATOM 22 H5'2 U A 53 -10.807 13.461 -5.951 1.00 0.00 H Missing atom added: ATOM 23 H4' U A 53 -13.019 13.300 -6.926 1.00 0.00 H Missing atom added: ATOM 24 H3' U A 53 -12.216 10.638 -5.681 1.00 0.00 H Missing atom added: ATOM 27 H1' U A 53 -14.363 10.764 -8.824 1.00 0.00 H Missing atom added: ATOM 25 H2' U A 53 -14.443 9.846 -6.217 1.00 0.00 H Missing atom added: ATOM 26 HO'2 U A 53 -15.060 12.336 -6.113 1.00 0.00 H Missing atom added: ATOM 29 H6 U A 53 -10.988 10.123 -8.108 1.00 0.00 H Missing atom added: ATOM 30 H3 U A 53 -13.896 6.007 -9.395 1.00 0.00 H Missing atom added: ATOM 28 H5 U A 53 -9.834 7.994 -8.594 1.00 0.00 H Missing atom added: ATOM 23 H5'1 A A 54 -15.788 11.024 -3.850 1.00 0.00 H Missing atom added: ATOM 24 H5'2 A A 54 -15.628 10.746 -2.024 1.00 0.00 H Missing atom added: ATOM 25 H4' A A 54 -17.383 9.584 -3.143 1.00 0.00 H Missing atom added: ATOM 26 H3' A A 54 -15.210 7.730 -2.248 1.00 0.00 H Missing atom added: ATOM 29 H1' A A 54 -17.059 7.070 -5.513 1.00 0.00 H Missing atom added: ATOM 27 H2' A A 54 -16.605 5.908 -3.056 1.00 0.00 H Missing atom added: ATOM 28 HO'2 A A 54 -18.520 7.588 -2.705 1.00 0.00 H Missing atom added: ATOM 30 H8 A A 54 -13.659 8.279 -4.813 1.00 0.00 H Missing atom added: ATOM 31 H61 A A 54 -11.121 4.377 -6.307 1.00 0.00 H Missing atom added: ATOM 32 H62 A A 54 -11.596 2.817 -6.817 1.00 0.00 H Missing atom added: ATOM 33 H2 A A 54 -16.312 2.275 -6.552 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 55 -18.522 5.852 -0.785 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 55 -18.293 5.366 0.988 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 55 -19.174 3.689 -0.423 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 55 -16.395 3.036 0.475 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 55 -17.593 2.047 -3.010 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 55 -16.659 0.922 -0.671 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 55 -19.160 1.350 -0.314 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 55 -15.313 4.710 -1.940 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 55 -12.011 -0.589 -4.795 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 55 -15.340 -1.852 -4.072 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 55 -13.704 -2.145 -4.265 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 56 -18.247 -0.344 1.136 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 56 -17.967 -1.014 2.841 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 56 -17.709 -2.564 1.071 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 56 -15.087 -1.885 2.371 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 56 -15.287 -2.606 -1.380 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 56 -14.080 -3.546 0.952 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 56 -16.417 -4.565 0.898 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 56 -15.010 0.276 0.534 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 56 -10.777 2.097 -0.485 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 56 -10.031 0.823 -1.353 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 56 -13.149 2.236 0.585 1.00 0.00 H Missing atom added: ATOM 24 H5'1 G A 57 -14.759 -5.681 2.158 1.00 0.00 H Missing atom added: ATOM 25 H5'2 G A 57 -14.298 -6.473 3.767 1.00 0.00 H Missing atom added: ATOM 26 H4' G A 57 -13.028 -7.122 1.867 1.00 0.00 H Missing atom added: ATOM 27 H3' G A 57 -11.492 -5.469 3.840 1.00 0.00 H Missing atom added: ATOM 30 H1' G A 57 -10.771 -5.080 0.135 1.00 0.00 H Missing atom added: ATOM 28 H2' G A 57 -9.548 -5.778 2.541 1.00 0.00 H Missing atom added: ATOM 29 HO'2 G A 57 -10.680 -7.868 1.674 1.00 0.00 H Missing atom added: ATOM 31 H8 G A 57 -12.450 -3.030 2.765 1.00 0.00 H Missing atom added: ATOM 34 H1 G A 57 -6.757 -0.171 0.205 1.00 0.00 H Missing atom added: ATOM 32 H21 G A 57 -6.691 -3.601 -0.994 1.00 0.00 H Missing atom added: ATOM 33 H22 G A 57 -5.858 -2.225 -0.536 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 58 -9.413 -8.826 2.938 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 58 -9.079 -9.945 4.378 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 58 -7.431 -9.674 2.591 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 58 -6.731 -7.795 4.969 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 58 -5.963 -6.864 1.349 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 58 -4.712 -7.225 3.846 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 58 -4.877 -9.530 2.801 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 58 -8.288 -6.074 3.867 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 58 -7.895 -1.407 4.442 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 58 -6.510 -1.038 3.506 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 58 -9.073 -3.689 4.873 1.00 0.00 H Missing atom added: ATOM 21 H5'1 C A 59 -3.421 -9.207 4.555 1.00 0.00 H Missing atom added: ATOM 22 H5'2 C A 59 -2.712 -10.336 5.842 1.00 0.00 H Missing atom added: ATOM 23 H4' C A 59 -1.284 -8.693 4.768 1.00 0.00 H Missing atom added: ATOM 24 H3' C A 59 -2.432 -7.667 7.504 1.00 0.00 H Missing atom added: ATOM 27 H1' C A 59 -1.589 -5.286 4.646 1.00 0.00 H Missing atom added: ATOM 25 H2' C A 59 -0.943 -5.772 7.347 1.00 0.00 H Missing atom added: ATOM 26 HO'2 C A 59 0.559 -7.334 5.997 1.00 0.00 H Missing atom added: ATOM 30 H6 C A 59 -4.355 -6.706 6.272 1.00 0.00 H Missing atom added: ATOM 28 H41 C A 59 -6.944 -2.990 7.598 1.00 0.00 H Missing atom added: ATOM 29 H42 C A 59 -5.898 -1.678 7.261 1.00 0.00 H Missing atom added: ATOM 31 H5 C A 59 -6.585 -5.550 7.270 1.00 0.00 H Missing atom added: ATOM 21 H5'1 RC3 A 60 1.324 -7.064 8.228 1.00 0.00 H Missing atom added: ATOM 22 H5'2 RC3 A 60 2.068 -7.986 9.653 1.00 0.00 H Missing atom added: ATOM 23 H4' RC3 A 60 2.639 -5.680 9.445 1.00 0.00 H Missing atom added: ATOM 24 H3' RC3 A 60 0.382 -6.216 11.541 1.00 0.00 H Missing atom added: ATOM 27 H1' RC3 A 60 0.637 -2.916 9.624 1.00 0.00 H Missing atom added: ATOM 25 H2' RC3 A 60 0.623 -3.917 12.268 1.00 0.00 H Missing atom added: ATOM 26 HO'2 RC3 A 60 3.036 -4.125 11.483 1.00 0.00 H Missing atom added: ATOM 30 H6 RC3 A 60 -1.320 -5.811 9.725 1.00 0.00 H Missing atom added: ATOM 28 H41 RC3 A 60 -5.713 -4.206 10.365 1.00 0.00 H Missing atom added: ATOM 29 H42 RC3 A 60 -5.450 -2.548 10.702 1.00 0.00 H Missing atom added: ATOM 31 H5 RC3 A 60 -4.005 -6.105 9.845 1.00 0.00 H Missing atom added: ATOM 32 H3T RC3 A 60 2.399 -5.271 12.425 1.00 0.00 H Missing atom added: ATOM 3 OP3 A A 1 6.452 7.898 -4.823 1.00 68.69 O Number of atoms: 1917 Number of residues: 60 Building intraresidual bonds... Building intraresidual angles... Building intraresidual dihedrals... Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2065 Number of angles built: 3696 Number of dihedrals built: 5625 Number of impropers built: 403 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 1830725 Number of van der Waals pairs: 217495 Number of H-bonds built: 29 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 7 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 139728511.0410 kcal/mol (138227281.0968 without restraints) Performing minimization step: 2. Total energy = 127764533.2157 kcal/mol (126437972.0508 without restraints) Performing minimization step: 3. Total energy = 117186769.8910 kcal/mol (116013260.0409 without restraints) Performing minimization step: 4. Total energy = 107823657.2041 kcal/mol (106784254.4093 without restraints) Performing minimization step: 5. Total energy = 99524667.2025 kcal/mol (98602728.9242 without restraints) Performing minimization step: 6. Total energy = 92157408.4537 kcal/mol (91338279.3593 without restraints) Performing minimization step: 7. Total energy = 85605180.2093 kcal/mol (84875927.9114 without restraints) Performing minimization step: 8. Total energy = 79764928.3139 kcal/mol (79114123.8173 without restraints) Performing minimization step: 9. Total energy = 74545558.4960 kcal/mol (73963096.4200 without restraints) Performing minimization step: 10. Total energy = 69866565.0133 kcal/mol (69343518.6299 without restraints) Performing minimization step: 11. Total energy = 65656929.6084 kcal/mol (65185435.0845 without restraints) Performing minimization step: 12. Total energy = 61854238.4970 kcal/mol (61427401.6919 without restraints) Performing minimization step: 13. Total energy = 58403956.8807 kcal/mol (58015775.1274 without restraints) Performing minimization step: 14. Total energy = 55258796.2466 kcal/mol (54904087.4065 without restraints) Performing minimization step: 15. Total energy = 52378114.4681 kcal/mol (52052446.7114 without restraints) Performing minimization step: 16. Total energy = 49727304.4808 kcal/mol (49426922.7190 without restraints) Performing minimization step: 17. Total energy = 47277151.1713 kcal/mol (46998899.2061 without restraints) Performing minimization step: 18. Total energy = 45003160.9967 kcal/mol (44744401.2493 without restraints) Performing minimization step: 19. Total energy = 42884887.1689 kcal/mol (42643421.4888 without restraints) Performing minimization step: 20. Total energy = 40905280.7230 kcal/mol (40679276.0081 without restraints) Performing minimization step: 21. Total energy = 39050095.0678 kcal/mol (38838016.5957 without restraints) Performing minimization step: 22. Total energy = 37307362.6150 kcal/mol (37107916.6818 without restraints) Performing minimization step: 23. Total energy = 35666951.4213 kcal/mol (35479037.6308 without restraints) Performing minimization step: 24. Total energy = 34120200.7378 kcal/mol (33942873.3614 without restraints) Performing minimization step: 25. Total energy = 32659628.3467 kcal/mol (32492065.6482 without restraints) Performing minimization step: 26. Total energy = 31278699.5462 kcal/mol (31120179.7683 without restraints) Performing minimization step: 27. Total energy = 29971646.9027 kcal/mol (29821529.6293 without restraints) Performing minimization step: 28. Total energy = 28733330.5428 kcal/mol (28591042.2921 without restraints) Performing minimization step: 29. Total energy = 27559130.1087 kcal/mol (27424153.1936 without restraints) Performing minimization step: 30. Total energy = 26444861.0573 kcal/mol (26316724.9403 without restraints) Performing minimization step: 31. Total energy = 25386709.4799 kcal/mol (25264984.0156 without restraints) Performing minimization step: 32. Total energy = 24381180.9233 kcal/mol (24265471.0234 without restraints) Performing minimization step: 33. Total energy = 23425059.7632 kcal/mol (23315001.1340 without restraints) Performing minimization step: 34. Total energy = 22515376.5324 kcal/mol (22410632.2200 without restraints) Performing minimization step: 35. Total energy = 21649381.2624 kcal/mol (21549638.8105 without restraints) Performing minimization step: 36. Total energy = 20824521.3938 kcal/mol (20729490.4693 without restraints) Performing minimization step: 37. Total energy = 20038423.1883 kcal/mol (19947833.5655 without restraints) Performing minimization step: 38. Total energy = 19288875.8457 kcal/mol (19202475.6709 without restraints) Performing minimization step: 39. Total energy = 18573817.7424 kcal/mol (18491372.0196 without restraints) Performing minimization step: 40. Total energy = 17891324.3529 kcal/mol (17812613.6058 without restraints) Performing minimization step: 41. Total energy = 17239597.5288 kcal/mol (17164416.6062 without restraints) Performing minimization step: 42. Total energy = 16616955.8914 kcal/mol (16545112.8935 without restraints) Performing minimization step: 43. Total energy = 16021826.1544 kcal/mol (15953141.4575 without restraints) Performing minimization step: 44. Total energy = 15452735.2333 kcal/mol (15387040.6011 without restraints) Performing minimization step: 45. Total energy = 14908303.0347 kcal/mol (14845440.8043 without restraints) Performing minimization step: 46. Total energy = 14387235.8405 kcal/mol (14327058.1740 without restraints) Performing minimization step: 47. Total energy = 13888320.2168 kcal/mol (13830688.4113 without restraints) Performing minimization step: 48. Total energy = 13410417.3963 kcal/mol (13355201.2470 without restraints) Performing minimization step: 49. Total energy = 12952458.0861 kcal/mol (12899535.2972 without restraints) Performing minimization step: 50. Total energy = 12513437.6636 kcal/mol (12462693.3026 without restraints) Performing minimization step: 51. Total energy = 12092411.7283 kcal/mol (12043737.7213 without restraints) Performing minimization step: 52. Total energy = 11688491.9805 kcal/mol (11641786.6435 without restraints) Performing minimization step: 53. Total energy = 11300842.4014 kcal/mol (11256010.0068 without restraints) Performing minimization step: 54. Total energy = 10928675.7127 kcal/mol (10885626.0869 without restraints) Performing minimization step: 55. Total energy = 10571250.0931 kcal/mol (10529898.2435 without restraints) Performing minimization step: 56. Total energy = 10227866.1360 kcal/mol (10188131.9051 without restraints) Performing minimization step: 57. Total energy = 9897864.0279 kcal/mol (9859671.7727 without restraints) Performing minimization step: 58. Total energy = 9580620.9311 kcal/mol (9543899.2262 without restraints) Performing minimization step: 59. Total energy = 9275548.5591 kcal/mol (9240229.9207 without restraints) Performing minimization step: 60. Total energy = 8982090.9271 kcal/mol (8948111.5574 without restraints) Performing minimization step: 61. Total energy = 8699722.2659 kcal/mol (8667021.8165 without restraints) Performing minimization step: 62. Total energy = 8427945.0878 kcal/mol (8396466.4396 without restraints) Performing minimization step: 63. Total energy = 8166288.3909 kcal/mol (8135977.4497 without restraints) Performing minimization step: 64. Total energy = 7914305.9947 kcal/mol (7885111.5025 without restraints) Performing minimization step: 65. Total energy = 7671574.9932 kcal/mol (7643448.3520 without restraints) Performing minimization step: 66. Total energy = 7437694.3202 kcal/mol (7410589.4292 without restraints) Performing minimization step: 67. Total energy = 7212283.4152 kcal/mol (7186156.5186 without restraints) Performing minimization step: 68. Total energy = 6994980.9844 kcal/mol (6969790.5307 without restraints) Performing minimization step: 69. Total energy = 6785443.8481 kcal/mol (6761150.3589 without restraints) Performing minimization step: 70. Total energy = 6583345.8689 kcal/mol (6559911.8171 without restraints) Performing minimization step: 71. Total energy = 6388376.9541 kcal/mol (6365766.6496 without restraints) Performing minimization step: 72. Total energy = 6200242.1255 kcal/mol (6178421.6103 without restraints) Performing minimization step: 73. Total energy = 6018660.6539 kcal/mol (5997597.6027 without restraints) Performing minimization step: 74. Total energy = 5843365.2512 kcal/mol (5823028.8795 without restraints) Performing minimization step: 75. Total energy = 5674101.3161 kcal/mol (5654462.2944 without restraints) Performing minimization step: 76. Total energy = 5510626.2305 kcal/mol (5491656.6038 without restraints) Performing minimization step: 77. Total energy = 5352708.7016 kcal/mol (5334381.8144 without restraints) Performing minimization step: 78. Total energy = 5200128.1461 kcal/mol (5182418.5725 without restraints) Performing minimization step: 79. Total energy = 5052674.1151 kcal/mol (5035557.5923 without restraints) Performing minimization step: 80. Total energy = 4910145.7539 kcal/mol (4893599.1213 without restraints) Performing minimization step: 81. Total energy = 4772351.2972 kcal/mol (4756352.4384 without restraints) Performing minimization step: 82. Total energy = 4639107.5944 kcal/mol (4623635.3828 without restraints) Performing minimization step: 83. Total energy = 4510239.6645 kcal/mol (4495273.9126 without restraints) Performing minimization step: 84. Total energy = 4385580.2782 kcal/mol (4371101.6897 without restraints) Performing minimization step: 85. Total energy = 4264969.5642 kcal/mol (4250959.6891 without restraints) Performing minimization step: 86. Total energy = 4148254.6399 kcal/mol (4134695.8319 without restraints) Performing minimization step: 87. Total energy = 4035289.2619 kcal/mol (4022164.6387 without restraints) Performing minimization step: 88. Total energy = 3925933.4993 kcal/mol (3913226.9050 without restraints) Performing minimization step: 89. Total energy = 3820053.4233 kcal/mol (3807749.3927 without restraints) Performing minimization step: 90. Total energy = 3717520.8150 kcal/mol (3705604.5405 without restraints) Performing minimization step: 91. Total energy = 3618212.8903 kcal/mol (3606670.1899 without restraints) Performing minimization step: 92. Total energy = 3522012.0387 kcal/mol (3510829.3263 without restraints) Performing minimization step: 93. Total energy = 3428805.5773 kcal/mol (3417969.8343 without restraints) Performing minimization step: 94. Total energy = 3338485.5174 kcal/mol (3327984.2662 without restraints) Performing minimization step: 95. Total energy = 3250948.3443 kcal/mol (3240769.6226 without restraints) Performing minimization step: 96. Total energy = 3166094.8077 kcal/mol (3156227.1447 without restraints) Performing minimization step: 97. Total energy = 3083829.7242 kcal/mol (3074262.1179 without restraints) Performing minimization step: 98. Total energy = 3004061.7891 kcal/mol (2994783.6844 without restraints) Performing minimization step: 99. Total energy = 2926703.3984 kcal/mol (2917704.6672 without restraints) Performing minimization step: 100. Total energy = 2851670.4795 kcal/mol (2842941.4004 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 2778882.3308 kcal/mol (2770413.5715 without restraints) Performing minimization step: 102. Total energy = 2708261.4695 kcal/mol (2700044.0688 without restraints) Performing minimization step: 103. Total energy = 2639733.4861 kcal/mol (2631758.8373 without restraints) Performing minimization step: 104. Total energy = 2573226.9072 kcal/mol (2565486.7422 without restraints) Performing minimization step: 105. Total energy = 2508673.0642 kcal/mol (2501159.4385 without restraints) Performing minimization step: 106. Total energy = 2446005.9691 kcal/mol (2438711.2478 without restraints) Performing minimization step: 107. Total energy = 2385162.1959 kcal/mol (2378079.0391 without restraints) Performing minimization step: 108. Total energy = 2326080.7674 kcal/mol (2319202.1185 without restraints) Performing minimization step: 109. Total energy = 2268703.0488 kcal/mol (2262022.1210 without restraints) Performing minimization step: 110. Total energy = 2212972.6452 kcal/mol (2206482.9104 without restraints) Performing minimization step: 111. Total energy = 2158835.3037 kcal/mol (2152530.4813 without restraints) Performing minimization step: 112. Total energy = 2106238.8217 kcal/mol (2100112.8676 without restraints) Performing minimization step: 113. Total energy = 2055132.9588 kcal/mol (2049180.0554 without restraints) Performing minimization step: 114. Total energy = 2005469.3520 kcal/mol (1999683.8987 without restraints) Performing minimization step: 115. Total energy = 1957201.4366 kcal/mol (1951578.0403 without restraints) Performing minimization step: 116. Total energy = 1910284.3689 kcal/mol (1904817.8354 without restraints) Performing minimization step: 117. Total energy = 1864674.9551 kcal/mol (1859360.2806 without restraints) Performing minimization step: 118. Total energy = 1820331.5802 kcal/mol (1815163.9436 without restraints) Performing minimization step: 119. Total energy = 1777214.1434 kcal/mol (1772188.8983 without restraints) Performing minimization step: 120. Total energy = 1735283.9947 kcal/mol (1730396.6624 without restraints) Performing minimization step: 121. Total energy = 1694503.8747 kcal/mol (1689750.1372 without restraints) Performing minimization step: 122. Total energy = 1654837.8579 kcal/mol (1650213.5515 without restraints) Performing minimization step: 123. Total energy = 1616251.2979 kcal/mol (1611752.4064 without restraints) Performing minimization step: 124. Total energy = 1578710.7751 kcal/mol (1574333.4246 without restraints) Performing minimization step: 125. Total energy = 1542184.0474 kcal/mol (1537924.4999 without restraints) Performing minimization step: 126. Total energy = 1506640.0029 kcal/mol (1502494.6510 without restraints) Performing minimization step: 127. Total energy = 1472048.6144 kcal/mol (1468013.9763 without restraints) Performing minimization step: 128. Total energy = 1438380.8964 kcal/mol (1434453.6106 without restraints) Performing minimization step: 129. Total energy = 1405608.8637 kcal/mol (1401785.6847 without restraints) Performing minimization step: 130. Total energy = 1373705.4922 kcal/mol (1369983.2855 without restraints) Performing minimization step: 131. Total energy = 1342644.6820 kcal/mol (1339020.4200 without restraints) Performing minimization step: 132. Total energy = 1312401.2201 kcal/mol (1308871.9778 without restraints) Performing minimization step: 133. Total energy = 1282950.7470 kcal/mol (1279513.6984 without restraints) Performing minimization step: 134. Total energy = 1254269.7239 kcal/mol (1250922.1378 without restraints) Performing minimization step: 135. Total energy = 1226335.4011 kcal/mol (1223074.6376 without restraints) Performing minimization step: 136. Total energy = 1199125.7879 kcal/mol (1195949.2952 without restraints) Performing minimization step: 137. Total energy = 1172619.6246 kcal/mol (1169524.9352 without restraints) Performing minimization step: 138. Total energy = 1146796.3540 kcal/mol (1143781.0821 without restraints) Performing minimization step: 139. Total energy = 1121636.0963 kcal/mol (1118697.9343 without restraints) Performing minimization step: 140. Total energy = 1097119.6230 kcal/mol (1094256.3389 without restraints) Performing minimization step: 141. Total energy = 1073228.3334 kcal/mol (1070437.7677 without restraints) Performing minimization step: 142. Total energy = 1049944.2312 kcal/mol (1047224.2947 without restraints) Performing minimization step: 143. Total energy = 1027249.9027 kcal/mol (1024598.5735 without restraints) Performing minimization step: 144. Total energy = 1005128.4957 kcal/mol (1002543.8170 without restraints) Performing minimization step: 145. Total energy = 983563.6983 kcal/mol (981043.7759 without restraints) Performing minimization step: 146. Total energy = 962539.7208 kcal/mol (960082.7212 without restraints) Performing minimization step: 147. Total energy = 942041.2761 kcal/mol (939645.4236 without restraints) Performing minimization step: 148. Total energy = 922053.5619 kcal/mol (919717.1374 without restraints) Performing minimization step: 149. Total energy = 902562.2439 kcal/mol (900283.5826 without restraints) Performing minimization step: 150. Total energy = 883553.4391 kcal/mol (881330.9282 without restraints) Performing minimization step: 151. Total energy = 865013.6998 kcal/mol (862845.7771 without restraints) Performing minimization step: 152. Total energy = 846929.9983 kcal/mol (844815.1504 without restraints) Performing minimization step: 153. Total energy = 829289.7126 kcal/mol (827226.4731 without restraints) Performing minimization step: 154. Total energy = 812080.6122 kcal/mol (810067.5599 without restraints) Performing minimization step: 155. Total energy = 795290.8443 kcal/mol (793326.6021 without restraints) Performing minimization step: 156. Total energy = 778908.9216 kcal/mol (776992.1546 without restraints) Performing minimization step: 157. Total energy = 762923.7089 kcal/mol (761053.1232 without restraints) Performing minimization step: 158. Total energy = 747324.4116 kcal/mol (745498.7527 without restraints) Performing minimization step: 159. Total energy = 732100.5642 kcal/mol (730318.6157 without restraints) Performing minimization step: 160. Total energy = 717242.0186 kcal/mol (715502.6012 without restraints) Performing minimization step: 161. Total energy = 702738.9341 kcal/mol (701040.9038 without restraints) Performing minimization step: 162. Total energy = 688581.7666 kcal/mol (686924.0141 without restraints) Performing minimization step: 163. Total energy = 674761.2588 kcal/mol (673142.7079 without restraints) Performing minimization step: 164. Total energy = 661268.4307 kcal/mol (659688.0376 without restraints) Performing minimization step: 165. Total energy = 648094.5704 kcal/mol (646551.3221 without restraints) Performing minimization step: 166. Total energy = 635231.2250 kcal/mol (633724.1389 without restraints) Performing minimization step: 167. Total energy = 622670.1924 kcal/mol (621198.3147 without restraints) Performing minimization step: 168. Total energy = 610403.5127 kcal/mol (608965.9180 without restraints) Performing minimization step: 169. Total energy = 598423.4604 kcal/mol (597019.2503 without restraints) Performing minimization step: 170. Total energy = 586722.5369 kcal/mol (585350.8394 without restraints) Performing minimization step: 171. Total energy = 575293.4627 kcal/mol (573953.4312 without restraints) Performing minimization step: 172. Total energy = 564129.1707 kcal/mol (562819.9835 without restraints) Performing minimization step: 173. Total energy = 553222.7991 kcal/mol (551943.6578 without restraints) Performing minimization step: 174. Total energy = 542567.6845 kcal/mol (541317.8145 without restraints) Performing minimization step: 175. Total energy = 532157.3562 kcal/mol (530936.0045 without restraints) Performing minimization step: 176. Total energy = 521985.5292 kcal/mol (520791.9648 without restraints) Performing minimization step: 177. Total energy = 512046.0990 kcal/mol (510879.6117 without restraints) Performing minimization step: 178. Total energy = 502333.1353 kcal/mol (501193.0354 without restraints) Performing minimization step: 179. Total energy = 492840.8768 kcal/mol (491726.4938 without restraints) Performing minimization step: 180. Total energy = 483563.7254 kcal/mol (482474.4082 without restraints) Performing minimization step: 181. Total energy = 474496.2415 kcal/mol (473431.3570 without restraints) Performing minimization step: 182. Total energy = 465633.1387 kcal/mol (464592.0719 without restraints) Performing minimization step: 183. Total energy = 456969.2791 kcal/mol (455951.4321 without restraints) Performing minimization step: 184. Total energy = 448499.6686 kcal/mol (447504.4602 without restraints) Performing minimization step: 185. Total energy = 440219.4523 kcal/mol (439246.3176 without restraints) Performing minimization step: 186. Total energy = 432123.9103 kcal/mol (431172.3000 without restraints) Performing minimization step: 187. Total energy = 424208.4535 kcal/mol (423277.8334 without restraints) Performing minimization step: 188. Total energy = 416468.6195 kcal/mol (415558.4702 without restraints) Performing minimization step: 189. Total energy = 408900.0685 kcal/mol (408009.8849 without restraints) Performing minimization step: 190. Total energy = 401498.5797 kcal/mol (400627.8706 without restraints) Performing minimization step: 191. Total energy = 394260.0477 kcal/mol (393408.3351 without restraints) Performing minimization step: 192. Total energy = 387180.4789 kcal/mol (386347.2978 without restraints) Performing minimization step: 193. Total energy = 380255.9878 kcal/mol (379440.8859 without restraints) Performing minimization step: 194. Total energy = 373482.7942 kcal/mol (372685.3314 without restraints) Performing minimization step: 195. Total energy = 366857.2197 kcal/mol (366076.9677 without restraints) Performing minimization step: 196. Total energy = 360375.6844 kcal/mol (359612.2264 without restraints) Performing minimization step: 197. Total energy = 354034.7046 kcal/mol (353287.6348 without restraints) Performing minimization step: 198. Total energy = 347830.8891 kcal/mol (347099.8127 without restraints) Performing minimization step: 199. Total energy = 341760.9369 kcal/mol (341045.4696 without restraints) Performing minimization step: 200. Total energy = 335821.6345 kcal/mol (335121.4020 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 330009.8532 kcal/mol (329324.4910 without restraints) Performing minimization step: 202. Total energy = 324322.5467 kcal/mol (323651.7000 without restraints) Performing minimization step: 203. Total energy = 318756.7477 kcal/mol (318100.0710 without restraints) Performing minimization step: 204. Total energy = 313309.5673 kcal/mol (312666.7240 without restraints) Performing minimization step: 205. Total energy = 307978.1915 kcal/mol (307348.8538 without restraints) Performing minimization step: 206. Total energy = 302759.8791 kcal/mol (302143.7278 without restraints) Performing minimization step: 207. Total energy = 297651.9601 kcal/mol (297048.6840 without restraints) Performing minimization step: 208. Total energy = 292651.8328 kcal/mol (292061.1289 without restraints) Performing minimization step: 209. Total energy = 287756.9630 kcal/mol (287178.5360 without restraints) Performing minimization step: 210. Total energy = 282964.8802 kcal/mol (282398.4423 without restraints) Performing minimization step: 211. Total energy = 278273.1781 kcal/mol (277718.4488 without restraints) Performing minimization step: 212. Total energy = 273679.5107 kcal/mol (273136.2168 without restraints) Performing minimization step: 213. Total energy = 269181.5919 kcal/mol (268649.4669 without restraints) Performing minimization step: 214. Total energy = 264777.1933 kcal/mol (264255.9775 without restraints) Performing minimization step: 215. Total energy = 260464.1423 kcal/mol (259953.5825 without restraints) Performing minimization step: 216. Total energy = 256240.3210 kcal/mol (255740.1705 without restraints) Performing minimization step: 217. Total energy = 252103.6645 kcal/mol (251613.6825 without restraints) Performing minimization step: 218. Total energy = 248052.1593 kcal/mol (247572.1112 without restraints) Performing minimization step: 219. Total energy = 244083.8419 kcal/mol (243613.4988 without restraints) Performing minimization step: 220. Total energy = 240196.7976 kcal/mol (239735.9364 without restraints) Performing minimization step: 221. Total energy = 236389.1589 kcal/mol (235937.5618 without restraints) Performing minimization step: 222. Total energy = 232659.1043 kcal/mol (232216.5590 without restraints) Performing minimization step: 223. Total energy = 229004.8571 kcal/mol (228571.1564 without restraints) Performing minimization step: 224. Total energy = 225424.6840 kcal/mol (224999.6262 without restraints) Performing minimization step: 225. Total energy = 221916.8942 kcal/mol (221500.2817 without restraints) Performing minimization step: 226. Total energy = 218479.8377 kcal/mol (218071.4784 without restraints) Performing minimization step: 227. Total energy = 215111.9051 kcal/mol (214711.6112 without restraints) Performing minimization step: 228. Total energy = 211811.5256 kcal/mol (211419.1141 without restraints) Performing minimization step: 229. Total energy = 208577.1665 kcal/mol (208192.4587 without restraints) Performing minimization step: 230. Total energy = 205407.3321 kcal/mol (205030.1536 without restraints) Performing minimization step: 231. Total energy = 202300.5627 kcal/mol (201930.7431 without restraints) Performing minimization step: 232. Total energy = 199255.4333 kcal/mol (198892.8066 without restraints) Performing minimization step: 233. Total energy = 196270.5534 kcal/mol (195914.9574 without restraints) Performing minimization step: 234. Total energy = 193344.5655 kcal/mol (192995.8419 without restraints) Performing minimization step: 235. Total energy = 190476.1446 kcal/mol (190134.1390 without restraints) Performing minimization step: 236. Total energy = 187663.9969 kcal/mol (187328.5582 without restraints) Performing minimization step: 237. Total energy = 184906.8595 kcal/mol (184577.8406 without restraints) Performing minimization step: 238. Total energy = 182203.4998 kcal/mol (181880.7569 without restraints) Performing minimization step: 239. Total energy = 179552.7136 kcal/mol (179236.1062 without restraints) Performing minimization step: 240. Total energy = 176953.3257 kcal/mol (176642.7168 without restraints) Performing minimization step: 241. Total energy = 174404.1885 kcal/mol (174099.4442 without restraints) Performing minimization step: 242. Total energy = 171904.1811 kcal/mol (171605.1708 without restraints) Performing minimization step: 243. Total energy = 169452.2097 kcal/mol (169158.8056 without restraints) Performing minimization step: 244. Total energy = 167047.2055 kcal/mol (166759.2831 without restraints) Performing minimization step: 245. Total energy = 164688.1249 kcal/mol (164405.5624 without restraints) Performing minimization step: 246. Total energy = 162373.9489 kcal/mol (162096.6275 without restraints) Performing minimization step: 247. Total energy = 160103.6823 kcal/mol (159831.4859 without restraints) Performing minimization step: 248. Total energy = 157876.3531 kcal/mol (157609.1682 without restraints) Performing minimization step: 249. Total energy = 155691.0120 kcal/mol (155428.7281 without restraints) Performing minimization step: 250. Total energy = 153546.7321 kcal/mol (153289.2409 without restraints) Performing minimization step: 251. Total energy = 151442.6078 kcal/mol (151189.8037 without restraints) Performing minimization step: 252. Total energy = 149377.7548 kcal/mol (149129.5347 without restraints) Performing minimization step: 253. Total energy = 147351.3095 kcal/mol (147107.5726 without restraints) Performing minimization step: 254. Total energy = 145362.4282 kcal/mol (145123.0762 without restraints) Performing minimization step: 255. Total energy = 143410.2871 kcal/mol (143175.2238 without restraints) Performing minimization step: 256. Total energy = 141494.0814 kcal/mol (141263.2129 without restraints) Performing minimization step: 257. Total energy = 139613.0253 kcal/mol (139386.2600 without restraints) Performing minimization step: 258. Total energy = 137766.3508 kcal/mol (137543.5992 without restraints) Performing minimization step: 259. Total energy = 135953.3083 kcal/mol (135734.4828 without restraints) Performing minimization step: 260. Total energy = 134173.1655 kcal/mol (133958.1808 without restraints) Performing minimization step: 261. Total energy = 132425.2071 kcal/mol (132213.9796 without restraints) Performing minimization step: 262. Total energy = 130708.7345 kcal/mol (130501.1829 without restraints) Performing minimization step: 263. Total energy = 129023.0654 kcal/mol (128819.1100 without restraints) Performing minimization step: 264. Total energy = 127367.5335 kcal/mol (127167.0966 without restraints) Performing minimization step: 265. Total energy = 125741.4878 kcal/mol (125544.4934 without restraints) Performing minimization step: 266. Total energy = 124144.2927 kcal/mol (123950.6668 without restraints) Performing minimization step: 267. Total energy = 122575.3273 kcal/mol (122384.9973 without restraints) Performing minimization step: 268. Total energy = 121033.9853 kcal/mol (120846.8807 without restraints) Performing minimization step: 269. Total energy = 119519.6746 kcal/mol (119335.7262 without restraints) Performing minimization step: 270. Total energy = 118031.8168 kcal/mol (117850.9572 without restraints) Performing minimization step: 271. Total energy = 116569.8472 kcal/mol (116392.0104 without restraints) Performing minimization step: 272. Total energy = 115133.2140 kcal/mol (114958.3357 without restraints) Performing minimization step: 273. Total energy = 113721.3785 kcal/mol (113549.3960 without restraints) Performing minimization step: 274. Total energy = 112333.8148 kcal/mol (112164.6666 without restraints) Performing minimization step: 275. Total energy = 110970.0091 kcal/mol (110803.6353 without restraints) Performing minimization step: 276. Total energy = 109629.4595 kcal/mol (109465.8016 without restraints) Performing minimization step: 277. Total energy = 108311.6763 kcal/mol (108150.6771 without restraints) Performing minimization step: 278. Total energy = 107016.1809 kcal/mol (106857.7847 without restraints) Performing minimization step: 279. Total energy = 105742.5061 kcal/mol (105586.6583 without restraints) Performing minimization step: 280. Total energy = 104490.1962 kcal/mol (104336.8436 without restraints) Performing minimization step: 281. Total energy = 103258.8051 kcal/mol (103107.8959 without restraints) Performing minimization step: 282. Total energy = 102047.8982 kcal/mol (101899.3816 without restraints) Performing minimization step: 283. Total energy = 100857.0508 kcal/mol (100710.8773 without restraints) Performing minimization step: 284. Total energy = 99685.8484 kcal/mol (99541.9695 without restraints) Performing minimization step: 285. Total energy = 98533.8862 kcal/mol (98392.2548 without restraints) Performing minimization step: 286. Total energy = 97400.7690 kcal/mol (97261.3390 without restraints) Performing minimization step: 287. Total energy = 96286.1111 kcal/mol (96148.8376 without restraints) Performing minimization step: 288. Total energy = 95189.5360 kcal/mol (95054.3750 without restraints) Performing minimization step: 289. Total energy = 94110.6764 kcal/mol (93977.5852 without restraints) Performing minimization step: 290. Total energy = 93049.1733 kcal/mol (92918.1099 without restraints) Performing minimization step: 291. Total energy = 92004.6766 kcal/mol (91875.6002 without restraints) Performing minimization step: 292. Total energy = 90976.8449 kcal/mol (90849.7157 without restraints) Performing minimization step: 293. Total energy = 89965.3445 kcal/mol (89840.1236 without restraints) Performing minimization step: 294. Total energy = 88969.8503 kcal/mol (88846.4998 without restraints) Performing minimization step: 295. Total energy = 87990.0447 kcal/mol (87868.5276 without restraints) Performing minimization step: 296. Total energy = 87025.6180 kcal/mol (86905.8982 without restraints) Performing minimization step: 297. Total energy = 86076.2679 kcal/mol (85958.3101 without restraints) Performing minimization step: 298. Total energy = 85141.6995 kcal/mol (85025.4694 without restraints) Performing minimization step: 299. Total energy = 84221.6252 kcal/mol (84107.0892 without restraints) Performing minimization step: 300. Total energy = 83315.7640 kcal/mol (83202.8894 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 82423.8422 kcal/mol (82312.5970 without restraints) Performing minimization step: 302. Total energy = 81545.5923 kcal/mol (81435.9454 without restraints) Performing minimization step: 303. Total energy = 80680.7534 kcal/mol (80572.6742 without restraints) Performing minimization step: 304. Total energy = 79829.0711 kcal/mol (79722.5302 without restraints) Performing minimization step: 305. Total energy = 78990.2970 kcal/mol (78885.2653 without restraints) Performing minimization step: 306. Total energy = 78164.1888 kcal/mol (78060.6380 without restraints) Performing minimization step: 307. Total energy = 77350.5091 kcal/mol (77248.4116 without restraints) Performing minimization step: 308. Total energy = 76549.0274 kcal/mol (76448.3563 without restraints) Performing minimization step: 309. Total energy = 75759.5179 kcal/mol (75660.2469 without restraints) Performing minimization step: 310. Total energy = 74981.7603 kcal/mol (74883.8637 without restraints) Performing minimization step: 311. Total energy = 74215.5394 kcal/mol (74118.9920 without restraints) Performing minimization step: 312. Total energy = 73460.6450 kcal/mol (73365.4224 without restraints) Performing minimization step: 313. Total energy = 72716.8718 kcal/mol (72622.9500 without restraints) Performing minimization step: 314. Total energy = 71984.0192 kcal/mol (71891.3748 without restraints) Performing minimization step: 315. Total energy = 71261.8911 kcal/mol (71170.5012 without restraints) Performing minimization step: 316. Total energy = 70550.2960 kcal/mol (70460.1382 without restraints) Performing minimization step: 317. Total energy = 69849.0465 kcal/mol (69760.0990 without restraints) Performing minimization step: 318. Total energy = 69157.9596 kcal/mol (69070.2010 without restraints) Performing minimization step: 319. Total energy = 68476.8562 kcal/mol (68390.2657 without restraints) Performing minimization step: 320. Total energy = 67805.5614 kcal/mol (67720.1185 without restraints) Performing minimization step: 321. Total energy = 67143.9038 kcal/mol (67059.5886 without restraints) Performing minimization step: 322. Total energy = 66491.7161 kcal/mol (66408.5089 without restraints) Performing minimization step: 323. Total energy = 65848.8343 kcal/mol (65766.7161 without restraints) Performing minimization step: 324. Total energy = 65215.0983 kcal/mol (65134.0503 without restraints) Performing minimization step: 325. Total energy = 64590.3511 kcal/mol (64510.3551 without restraints) Performing minimization step: 326. Total energy = 63974.4393 kcal/mol (63895.4772 without restraints) Performing minimization step: 327. Total energy = 63367.2126 kcal/mol (63289.2670 without restraints) Performing minimization step: 328. Total energy = 62768.5240 kcal/mol (62691.5777 without restraints) Performing minimization step: 329. Total energy = 62178.2295 kcal/mol (62102.2657 without restraints) Performing minimization step: 330. Total energy = 61596.1882 kcal/mol (61521.1904 without restraints) Performing minimization step: 331. Total energy = 61022.2621 kcal/mol (60948.2142 without restraints) Performing minimization step: 332. Total energy = 60456.3160 kcal/mol (60383.2022 without restraints) Performing minimization step: 333. Total energy = 59898.2176 kcal/mol (59826.0224 without restraints) Performing minimization step: 334. Total energy = 59347.8372 kcal/mol (59276.5456 without restraints) Performing minimization step: 335. Total energy = 58805.0476 kcal/mol (58734.6447 without restraints) Performing minimization step: 336. Total energy = 58269.7249 kcal/mol (58200.1961 without restraints) Performing minimization step: 337. Total energy = 57741.7468 kcal/mol (57673.0779 without restraints) Performing minimization step: 338. Total energy = 57220.9942 kcal/mol (57153.1713 without restraints) Performing minimization step: 339. Total energy = 56707.3501 kcal/mol (56640.3595 without restraints) Performing minimization step: 340. Total energy = 56200.6995 kcal/mol (56134.5277 without restraints) Performing minimization step: 341. Total energy = 55700.9300 kcal/mol (55635.5641 without restraints) Performing minimization step: 342. Total energy = 55207.9317 kcal/mol (55143.3586 without restraints) Performing minimization step: 343. Total energy = 54721.5965 kcal/mol (54657.8037 without restraints) Performing minimization step: 344. Total energy = 54241.8185 kcal/mol (54178.7936 without restraints) Performing minimization step: 345. Total energy = 53768.4936 kcal/mol (53706.2244 without restraints) Performing minimization step: 346. Total energy = 53301.5201 kcal/mol (53239.9948 without restraints) Performing minimization step: 347. Total energy = 52840.7983 kcal/mol (52780.0052 without restraints) Performing minimization step: 348. Total energy = 52386.2303 kcal/mol (52326.1579 without restraints) Performing minimization step: 349. Total energy = 51937.7200 kcal/mol (51878.3571 without restraints) Performing minimization step: 350. Total energy = 51495.1731 kcal/mol (51436.5088 without restraints) Performing minimization step: 351. Total energy = 51058.4974 kcal/mol (51000.5207 without restraints) Performing minimization step: 352. Total energy = 50627.6019 kcal/mol (50570.3023 without restraints) Performing minimization step: 353. Total energy = 50202.3980 kcal/mol (50145.7652 without restraints) Performing minimization step: 354. Total energy = 49782.7983 kcal/mol (49726.8219 without restraints) Performing minimization step: 355. Total energy = 49368.7171 kcal/mol (49313.3872 without restraints) Performing minimization step: 356. Total energy = 48960.0704 kcal/mol (48905.3772 without restraints) Performing minimization step: 357. Total energy = 48556.7755 kcal/mol (48502.7093 without restraints) Performing minimization step: 358. Total energy = 48158.7515 kcal/mol (48105.3029 without restraints) Performing minimization step: 359. Total energy = 47765.9189 kcal/mol (47713.0785 without restraints) Performing minimization step: 360. Total energy = 47378.1996 kcal/mol (47325.9583 without restraints) Performing minimization step: 361. Total energy = 46995.5169 kcal/mol (46943.8658 without restraints) Performing minimization step: 362. Total energy = 46617.7957 kcal/mol (46566.7259 without restraints) Performing minimization step: 363. Total energy = 46244.9619 kcal/mol (46194.4648 without restraints) Performing minimization step: 364. Total energy = 45876.9430 kcal/mol (45827.0101 without restraints) Performing minimization step: 365. Total energy = 45513.6677 kcal/mol (45464.2907 without restraints) Performing minimization step: 366. Total energy = 45155.0660 kcal/mol (45106.2367 without restraints) Performing minimization step: 367. Total energy = 44801.0688 kcal/mol (44752.7792 without restraints) Performing minimization step: 368. Total energy = 44451.6091 kcal/mol (44403.8512 without restraints) Performing minimization step: 369. Total energy = 44106.6202 kcal/mol (44059.3863 without restraints) Performing minimization step: 370. Total energy = 43766.0368 kcal/mol (43719.3191 without restraints) Performing minimization step: 371. Total energy = 43429.7949 kcal/mol (43383.5862 without restraints) Performing minimization step: 372. Total energy = 43097.8316 kcal/mol (43052.1243 without restraints) Performing minimization step: 373. Total energy = 42770.0848 kcal/mol (42724.8718 without restraints) Performing minimization step: 374. Total energy = 42446.4938 kcal/mol (42401.7679 without restraints) Performing minimization step: 375. Total energy = 42126.9987 kcal/mol (42082.7530 without restraints) Performing minimization step: 376. Total energy = 41811.5408 kcal/mol (41767.7683 without restraints) Performing minimization step: 377. Total energy = 41500.0623 kcal/mol (41456.7563 without restraints) Performing minimization step: 378. Total energy = 41192.5063 kcal/mol (41149.6601 without restraints) Performing minimization step: 379. Total energy = 40888.8170 kcal/mol (40846.4241 without restraints) Performing minimization step: 380. Total energy = 40588.9394 kcal/mol (40546.9935 without restraints) Performing minimization step: 381. Total energy = 40292.8198 kcal/mol (40251.3143 without restraints) Performing minimization step: 382. Total energy = 40000.4046 kcal/mol (39959.3335 without restraints) Performing minimization step: 383. Total energy = 39711.6421 kcal/mol (39670.9992 without restraints) Performing minimization step: 384. Total energy = 39426.4804 kcal/mol (39386.2598 without restraints) Performing minimization step: 385. Total energy = 39144.8693 kcal/mol (39105.0651 without restraints) Performing minimization step: 386. Total energy = 38866.7591 kcal/mol (38827.3653 without restraints) Performing minimization step: 387. Total energy = 38592.1008 kcal/mol (38553.1118 without restraints) Performing minimization step: 388. Total energy = 38320.8463 kcal/mol (38282.2565 without restraints) Performing minimization step: 389. Total energy = 38052.9483 kcal/mol (38014.7521 without restraints) Performing minimization step: 390. Total energy = 37788.3604 kcal/mol (37750.5523 without restraints) Performing minimization step: 391. Total energy = 37527.0366 kcal/mol (37489.6114 without restraints) Performing minimization step: 392. Total energy = 37268.9319 kcal/mol (37231.8842 without restraints) Performing minimization step: 393. Total energy = 37014.0020 kcal/mol (36977.3266 without restraints) Performing minimization step: 394. Total energy = 36762.2031 kcal/mol (36725.8950 without restraints) Performing minimization step: 395. Total energy = 36513.4922 kcal/mol (36477.5463 without restraints) Performing minimization step: 396. Total energy = 36267.8273 kcal/mol (36232.2387 without restraints) Performing minimization step: 397. Total energy = 36025.1665 kcal/mol (35989.9303 without restraints) Performing minimization step: 398. Total energy = 35785.4691 kcal/mol (35750.5805 without restraints) Performing minimization step: 399. Total energy = 35548.6947 kcal/mol (35514.1490 without restraints) Performing minimization step: 400. Total energy = 35314.8033 kcal/mol (35280.5957 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 35083.7562 kcal/mol (35049.8823 without restraints) Performing minimization step: 402. Total energy = 34855.5148 kcal/mol (34821.9701 without restraints) Performing minimization step: 403. Total energy = 34630.0412 kcal/mol (34596.8213 without restraints) Performing minimization step: 404. Total energy = 34407.2982 kcal/mol (34374.3986 without restraints) Performing minimization step: 405. Total energy = 34187.2488 kcal/mol (34154.6653 without restraints) Performing minimization step: 406. Total energy = 33969.8571 kcal/mol (33937.5854 without restraints) Performing minimization step: 407. Total energy = 33755.0873 kcal/mol (33723.1233 without restraints) Performing minimization step: 408. Total energy = 33542.9040 kcal/mol (33511.2436 without restraints) Performing minimization step: 409. Total energy = 33333.2736 kcal/mol (33301.9127 without restraints) Performing minimization step: 410. Total energy = 33126.1612 kcal/mol (33095.0958 without restraints) Performing minimization step: 411. Total energy = 32921.5336 kcal/mol (32890.7598 without restraints) Performing minimization step: 412. Total energy = 32719.3576 kcal/mol (32688.8716 without restraints) Performing minimization step: 413. Total energy = 32519.6009 kcal/mol (32489.3988 without restraints) Performing minimization step: 414. Total energy = 32322.2314 kcal/mol (32292.3095 without restraints) Performing minimization step: 415. Total energy = 32127.2173 kcal/mol (32097.5719 without restraints) Performing minimization step: 416. Total energy = 31934.5277 kcal/mol (31905.1551 without restraints) Performing minimization step: 417. Total energy = 31744.1321 kcal/mol (31715.0288 without restraints) Performing minimization step: 418. Total energy = 31555.9998 kcal/mol (31527.1623 without restraints) Performing minimization step: 419. Total energy = 31370.1014 kcal/mol (31341.5261 without restraints) Performing minimization step: 420. Total energy = 31186.4075 kcal/mol (31158.0910 without restraints) Performing minimization step: 421. Total energy = 31004.8892 kcal/mol (30976.8281 without restraints) Performing minimization step: 422. Total energy = 30825.5180 kcal/mol (30797.7090 without restraints) Performing minimization step: 423. Total energy = 30648.2658 kcal/mol (30620.7057 without restraints) Performing minimization step: 424. Total energy = 30473.1053 kcal/mol (30445.7908 without restraints) Performing minimization step: 425. Total energy = 30300.0085 kcal/mol (30272.9363 without restraints) Performing minimization step: 426. Total energy = 30128.9491 kcal/mol (30102.1162 without restraints) Performing minimization step: 427. Total energy = 29959.9005 kcal/mol (29933.3037 without restraints) Performing minimization step: 428. Total energy = 29792.8365 kcal/mol (29766.4729 without restraints) Performing minimization step: 429. Total energy = 29627.7314 kcal/mol (29601.5979 without restraints) Performing minimization step: 430. Total energy = 29464.5598 kcal/mol (29438.6534 without restraints) Performing minimization step: 431. Total energy = 29303.2967 kcal/mol (29277.6145 without restraints) Performing minimization step: 432. Total energy = 29143.9174 kcal/mol (29118.4565 without restraints) Performing minimization step: 433. Total energy = 28986.3976 kcal/mol (28961.1552 without restraints) Performing minimization step: 434. Total energy = 28830.7133 kcal/mol (28805.6864 without restraints) Performing minimization step: 435. Total energy = 28676.8407 kcal/mol (28652.0268 without restraints) Performing minimization step: 436. Total energy = 28524.7568 kcal/mol (28500.1531 without restraints) Performing minimization step: 437. Total energy = 28374.4385 kcal/mol (28350.0423 without restraints) Performing minimization step: 438. Total energy = 28225.8630 kcal/mol (28201.6716 without restraints) Performing minimization step: 439. Total energy = 28079.0082 kcal/mol (28055.0190 without restraints) Performing minimization step: 440. Total energy = 27933.8516 kcal/mol (27910.0621 without restraints) Performing minimization step: 441. Total energy = 27790.3718 kcal/mol (27766.7793 without restraints) Performing minimization step: 442. Total energy = 27648.5474 kcal/mol (27625.1495 without restraints) Performing minimization step: 443. Total energy = 27508.3568 kcal/mol (27485.1510 without restraints) Performing minimization step: 444. Total energy = 27369.7791 kcal/mol (27346.7630 without restraints) Performing minimization step: 445. Total energy = 27232.7944 kcal/mol (27209.9656 without restraints) Performing minimization step: 446. Total energy = 27097.3818 kcal/mol (27074.7379 without restraints) Performing minimization step: 447. Total energy = 26963.5215 kcal/mol (26941.0600 without restraints) Performing minimization step: 448. Total energy = 26831.1933 kcal/mol (26808.9122 without restraints) Performing minimization step: 449. Total energy = 26700.3784 kcal/mol (26678.2751 without restraints) Performing minimization step: 450. Total energy = 26571.0571 kcal/mol (26549.1295 without restraints) Performing minimization step: 451. Total energy = 26443.2104 kcal/mol (26421.4564 without restraints) Performing minimization step: 452. Total energy = 26316.8200 kcal/mol (26295.2372 without restraints) Performing minimization step: 453. Total energy = 26191.8668 kcal/mol (26170.4532 without restraints) Performing minimization step: 454. Total energy = 26068.3333 kcal/mol (26047.0868 without restraints) Performing minimization step: 455. Total energy = 25946.2009 kcal/mol (25925.1192 without restraints) Performing minimization step: 456. Total energy = 25825.4516 kcal/mol (25804.5328 without restraints) Performing minimization step: 457. Total energy = 25706.0683 kcal/mol (25685.3102 without restraints) Performing minimization step: 458. Total energy = 25588.0336 kcal/mol (25567.4343 without restraints) Performing minimization step: 459. Total energy = 25471.3304 kcal/mol (25450.8879 without restraints) Performing minimization step: 460. Total energy = 25355.9419 kcal/mol (25335.6542 without restraints) Performing minimization step: 461. Total energy = 25241.8514 kcal/mol (25221.7165 without restraints) Performing minimization step: 462. Total energy = 25129.0426 kcal/mol (25109.0587 without restraints) Performing minimization step: 463. Total energy = 25017.4992 kcal/mol (24997.6643 without restraints) Performing minimization step: 464. Total energy = 24907.2049 kcal/mol (24887.5172 without restraints) Performing minimization step: 465. Total energy = 24798.1445 kcal/mol (24778.6021 without restraints) Performing minimization step: 466. Total energy = 24690.3020 kcal/mol (24670.9032 without restraints) Performing minimization step: 467. Total energy = 24583.6622 kcal/mol (24564.4051 without restraints) Performing minimization step: 468. Total energy = 24478.2100 kcal/mol (24459.0929 without restraints) Performing minimization step: 469. Total energy = 24373.9300 kcal/mol (24354.9510 without restraints) Performing minimization step: 470. Total energy = 24270.8075 kcal/mol (24251.9651 without restraints) Performing minimization step: 471. Total energy = 24168.8283 kcal/mol (24150.1205 without restraints) Performing minimization step: 472. Total energy = 24067.9771 kcal/mol (24049.4024 without restraints) Performing minimization step: 473. Total energy = 23968.2405 kcal/mol (23949.7973 without restraints) Performing minimization step: 474. Total energy = 23869.6040 kcal/mol (23851.2905 without restraints) Performing minimization step: 475. Total energy = 23772.0537 kcal/mol (23753.8684 without restraints) Performing minimization step: 476. Total energy = 23675.5757 kcal/mol (23657.5169 without restraints) Performing minimization step: 477. Total energy = 23580.1566 kcal/mol (23562.2229 without restraints) Performing minimization step: 478. Total energy = 23485.7836 kcal/mol (23467.9732 without restraints) Performing minimization step: 479. Total energy = 23392.4426 kcal/mol (23374.7542 without restraints) Performing minimization step: 480. Total energy = 23300.1209 kcal/mol (23282.5529 without restraints) Performing minimization step: 481. Total energy = 23208.8054 kcal/mol (23191.3562 without restraints) Performing minimization step: 482. Total energy = 23118.4839 kcal/mol (23101.1521 without restraints) Performing minimization step: 483. Total energy = 23029.1432 kcal/mol (23011.9273 without restraints) Performing minimization step: 484. Total energy = 22940.7711 kcal/mol (22923.6697 without restraints) Performing minimization step: 485. Total energy = 22853.3553 kcal/mol (22836.3669 without restraints) Performing minimization step: 486. Total energy = 22766.8837 kcal/mol (22750.0069 without restraints) Performing minimization step: 487. Total energy = 22681.3442 kcal/mol (22664.5776 without restraints) Performing minimization step: 488. Total energy = 22596.7249 kcal/mol (22580.0671 without restraints) Performing minimization step: 489. Total energy = 22513.0144 kcal/mol (22496.4641 without restraints) Performing minimization step: 490. Total energy = 22430.2009 kcal/mol (22413.7568 without restraints) Performing minimization step: 491. Total energy = 22348.2731 kcal/mol (22331.9339 without restraints) Performing minimization step: 492. Total energy = 22267.2198 kcal/mol (22250.9840 without restraints) Performing minimization step: 493. Total energy = 22187.0298 kcal/mol (22170.8963 without restraints) Performing minimization step: 494. Total energy = 22107.6920 kcal/mol (22091.6593 without restraints) Performing minimization step: 495. Total energy = 22029.1952 kcal/mol (22013.2622 without restraints) Performing minimization step: 496. Total energy = 21951.5292 kcal/mol (21935.6946 without restraints) Performing minimization step: 497. Total energy = 21874.6831 kcal/mol (21858.9458 without restraints) Performing minimization step: 498. Total energy = 21798.6465 kcal/mol (21783.0052 without restraints) Performing minimization step: 499. Total energy = 21723.4091 kcal/mol (21707.8625 without restraints) Performing minimization step: 500. Total energy = 21648.9605 kcal/mol (21633.5074 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 21575.2908 kcal/mol (21559.9302 without restraints) Performing minimization step: 502. Total energy = 21502.3896 kcal/mol (21487.1202 without restraints) Performing minimization step: 503. Total energy = 21430.2472 kcal/mol (21415.0680 without restraints) Performing minimization step: 504. Total energy = 21358.8539 kcal/mol (21343.7636 without restraints) Performing minimization step: 505. Total energy = 21288.2000 kcal/mol (21273.1976 without restraints) Performing minimization step: 506. Total energy = 21218.2759 kcal/mol (21203.3602 without restraints) Performing minimization step: 507. Total energy = 21149.0723 kcal/mol (21134.2422 without restraints) Performing minimization step: 508. Total energy = 21080.5797 kcal/mol (21065.8342 without restraints) Performing minimization step: 509. Total energy = 21012.7890 kcal/mol (20998.1271 without restraints) Performing minimization step: 510. Total energy = 20945.6911 kcal/mol (20931.1116 without restraints) Performing minimization step: 511. Total energy = 20879.2771 kcal/mol (20864.7791 without restraints) Performing minimization step: 512. Total energy = 20813.5379 kcal/mol (20799.1202 without restraints) Performing minimization step: 513. Total energy = 20748.4649 kcal/mol (20734.1266 without restraints) Performing minimization step: 514. Total energy = 20684.0493 kcal/mol (20669.7894 without restraints) Performing minimization step: 515. Total energy = 20620.2824 kcal/mol (20606.0998 without restraints) Performing minimization step: 516. Total energy = 20557.1558 kcal/mol (20543.0496 without restraints) Performing minimization step: 517. Total energy = 20494.6611 kcal/mol (20480.6304 without restraints) Performing minimization step: 518. Total energy = 20432.7901 kcal/mol (20418.8339 without restraints) Performing minimization step: 519. Total energy = 20371.5346 kcal/mol (20357.6519 without restraints) Performing minimization step: 520. Total energy = 20310.8865 kcal/mol (20297.0764 without restraints) Performing minimization step: 521. Total energy = 20250.8379 kcal/mol (20237.0995 without restraints) Performing minimization step: 522. Total energy = 20191.3806 kcal/mol (20177.7129 without restraints) Performing minimization step: 523. Total energy = 20132.5067 kcal/mol (20118.9089 without restraints) Performing minimization step: 524. Total energy = 20074.2089 kcal/mol (20060.6801 without restraints) Performing minimization step: 525. Total energy = 20016.4794 kcal/mol (20003.0187 without restraints) Performing minimization step: 526. Total energy = 19959.3108 kcal/mol (19945.9173 without restraints) Performing minimization step: 527. Total energy = 19902.6951 kcal/mol (19889.3680 without restraints) Performing minimization step: 528. Total energy = 19846.6255 kcal/mol (19833.3640 without restraints) Performing minimization step: 529. Total energy = 19791.0946 kcal/mol (19777.8977 without restraints) Performing minimization step: 530. Total energy = 19736.0951 kcal/mol (19722.9620 without restraints) Performing minimization step: 531. Total energy = 19681.6197 kcal/mol (19668.5498 without restraints) Performing minimization step: 532. Total energy = 19627.6621 kcal/mol (19614.6543 without restraints) Performing minimization step: 533. Total energy = 19574.2149 kcal/mol (19561.2686 without restraints) Performing minimization step: 534. Total energy = 19521.2711 kcal/mol (19508.3855 without restraints) Performing minimization step: 535. Total energy = 19468.8233 kcal/mol (19455.9974 without restraints) Performing minimization step: 536. Total energy = 19416.8653 kcal/mol (19404.0986 without restraints) Performing minimization step: 537. Total energy = 19365.3913 kcal/mol (19352.6830 without restraints) Performing minimization step: 538. Total energy = 19314.3939 kcal/mol (19301.7431 without restraints) Performing minimization step: 539. Total energy = 19263.8668 kcal/mol (19251.2729 without restraints) Performing minimization step: 540. Total energy = 19213.8037 kcal/mol (19201.2659 without restraints) Performing minimization step: 541. Total energy = 19164.1982 kcal/mol (19151.7159 without restraints) Performing minimization step: 542. Total energy = 19115.0440 kcal/mol (19102.6162 without restraints) Performing minimization step: 543. Total energy = 19066.3353 kcal/mol (19053.9616 without restraints) Performing minimization step: 544. Total energy = 19018.0655 kcal/mol (19005.7450 without restraints) Performing minimization step: 545. Total energy = 18970.2286 kcal/mol (18957.9608 without restraints) Performing minimization step: 546. Total energy = 18922.8190 kcal/mol (18910.6032 without restraints) Performing minimization step: 547. Total energy = 18875.8311 kcal/mol (18863.6665 without restraints) Performing minimization step: 548. Total energy = 18829.2584 kcal/mol (18817.1444 without restraints) Performing minimization step: 549. Total energy = 18783.0955 kcal/mol (18771.0314 without restraints) Performing minimization step: 550. Total energy = 18737.3367 kcal/mol (18725.3220 without restraints) Performing minimization step: 551. Total energy = 18691.9771 kcal/mol (18680.0110 without restraints) Performing minimization step: 552. Total energy = 18647.0098 kcal/mol (18635.0918 without restraints) Performing minimization step: 553. Total energy = 18602.4304 kcal/mol (18590.5598 without restraints) Performing minimization step: 554. Total energy = 18558.2328 kcal/mol (18546.4090 without restraints) Performing minimization step: 555. Total energy = 18514.4120 kcal/mol (18502.6344 without restraints) Performing minimization step: 556. Total energy = 18470.9629 kcal/mol (18459.2310 without restraints) Performing minimization step: 557. Total energy = 18427.8801 kcal/mol (18416.1932 without restraints) Performing minimization step: 558. Total energy = 18385.1588 kcal/mol (18373.5163 without restraints) Performing minimization step: 559. Total energy = 18342.7938 kcal/mol (18331.1951 without restraints) Performing minimization step: 560. Total energy = 18300.7800 kcal/mol (18289.2246 without restraints) Performing minimization step: 561. Total energy = 18259.1123 kcal/mol (18247.5996 without restraints) Performing minimization step: 562. Total energy = 18217.7862 kcal/mol (18206.3158 without restraints) Performing minimization step: 563. Total energy = 18176.7968 kcal/mol (18165.3681 without restraints) Performing minimization step: 564. Total energy = 18136.1395 kcal/mol (18124.7519 without restraints) Performing minimization step: 565. Total energy = 18095.8096 kcal/mol (18084.4626 without restraints) Performing minimization step: 566. Total energy = 18055.8023 kcal/mol (18044.4954 without restraints) Performing minimization step: 567. Total energy = 18016.1134 kcal/mol (18004.8460 without restraints) Performing minimization step: 568. Total energy = 17976.7379 kcal/mol (17965.5096 without restraints) Performing minimization step: 569. Total energy = 17937.6715 kcal/mol (17926.4817 without restraints) Performing minimization step: 570. Total energy = 17898.9094 kcal/mol (17887.7577 without restraints) Performing minimization step: 571. Total energy = 17860.4485 kcal/mol (17849.3343 without restraints) Performing minimization step: 572. Total energy = 17822.2839 kcal/mol (17811.2069 without restraints) Performing minimization step: 573. Total energy = 17784.4114 kcal/mol (17773.3710 without restraints) Performing minimization step: 574. Total energy = 17746.8270 kcal/mol (17735.8228 without restraints) Performing minimization step: 575. Total energy = 17709.5265 kcal/mol (17698.5580 without restraints) Performing minimization step: 576. Total energy = 17672.5057 kcal/mol (17661.5724 without restraints) Performing minimization step: 577. Total energy = 17635.7607 kcal/mol (17624.8622 without restraints) Performing minimization step: 578. Total energy = 17599.2876 kcal/mol (17588.4235 without restraints) Performing minimization step: 579. Total energy = 17563.0827 kcal/mol (17552.2526 without restraints) Performing minimization step: 580. Total energy = 17527.1425 kcal/mol (17516.3460 without restraints) Performing minimization step: 581. Total energy = 17491.4628 kcal/mol (17480.6993 without restraints) Performing minimization step: 582. Total energy = 17456.0399 kcal/mol (17445.3090 without restraints) Performing minimization step: 583. Total energy = 17420.8699 kcal/mol (17410.1713 without restraints) Performing minimization step: 584. Total energy = 17385.9495 kcal/mol (17375.2829 without restraints) Performing minimization step: 585. Total energy = 17351.2753 kcal/mol (17340.6401 without restraints) Performing minimization step: 586. Total energy = 17316.8435 kcal/mol (17306.2395 without restraints) Performing minimization step: 587. Total energy = 17282.6511 kcal/mol (17272.0777 without restraints) Performing minimization step: 588. Total energy = 17248.6944 kcal/mol (17238.1513 without restraints) Performing minimization step: 589. Total energy = 17214.9700 kcal/mol (17204.4569 without restraints) Performing minimization step: 590. Total energy = 17181.4749 kcal/mol (17170.9913 without restraints) Performing minimization step: 591. Total energy = 17148.2056 kcal/mol (17137.7513 without restraints) Performing minimization step: 592. Total energy = 17115.1589 kcal/mol (17104.7335 without restraints) Performing minimization step: 593. Total energy = 17082.3317 kcal/mol (17071.9349 without restraints) Performing minimization step: 594. Total energy = 17049.7212 kcal/mol (17039.3526 without restraints) Performing minimization step: 595. Total energy = 17017.3242 kcal/mol (17006.9834 without restraints) Performing minimization step: 596. Total energy = 16985.1376 kcal/mol (16974.8243 without restraints) Performing minimization step: 597. Total energy = 16953.1586 kcal/mol (16942.8725 without restraints) Performing minimization step: 598. Total energy = 16921.3840 kcal/mol (16911.1248 without restraints) Performing minimization step: 599. Total energy = 16889.8112 kcal/mol (16879.5786 without restraints) Performing minimization step: 600. Total energy = 16858.4372 kcal/mol (16848.2308 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 16827.2593 kcal/mol (16817.0788 without restraints) Performing minimization step: 602. Total energy = 16796.2747 kcal/mol (16786.1199 without restraints) Performing minimization step: 603. Total energy = 16765.4804 kcal/mol (16755.3510 without restraints) Performing minimization step: 604. Total energy = 16734.8748 kcal/mol (16724.7704 without restraints) Performing minimization step: 605. Total energy = 16704.4545 kcal/mol (16694.3749 without restraints) Performing minimization step: 606. Total energy = 16674.2171 kcal/mol (16664.1619 without restraints) Performing minimization step: 607. Total energy = 16644.1598 kcal/mol (16634.1289 without restraints) Performing minimization step: 608. Total energy = 16614.2800 kcal/mol (16604.2730 without restraints) Performing minimization step: 609. Total energy = 16584.5760 kcal/mol (16574.5927 without restraints) Performing minimization step: 610. Total energy = 16555.0451 kcal/mol (16545.0852 without restraints) Performing minimization step: 611. Total energy = 16525.6848 kcal/mol (16515.7480 without restraints) Performing minimization step: 612. Total energy = 16496.4928 kcal/mol (16486.5789 without restraints) Performing minimization step: 613. Total energy = 16467.4668 kcal/mol (16457.5756 without restraints) Performing minimization step: 614. Total energy = 16438.6047 kcal/mol (16428.7359 without restraints) Performing minimization step: 615. Total energy = 16409.9041 kcal/mol (16400.0574 without restraints) Performing minimization step: 616. Total energy = 16381.3630 kcal/mol (16371.5382 without restraints) Performing minimization step: 617. Total energy = 16352.9786 kcal/mol (16343.1755 without restraints) Performing minimization step: 618. Total energy = 16324.7498 kcal/mol (16314.9682 without restraints) Performing minimization step: 619. Total energy = 16296.6741 kcal/mol (16286.9137 without restraints) Performing minimization step: 620. Total energy = 16268.7495 kcal/mol (16259.0101 without restraints) Performing minimization step: 621. Total energy = 16240.9740 kcal/mol (16231.2553 without restraints) Performing minimization step: 622. Total energy = 16213.3458 kcal/mol (16203.6478 without restraints) Performing minimization step: 623. Total energy = 16185.8627 kcal/mol (16176.1850 without restraints) Performing minimization step: 624. Total energy = 16158.5226 kcal/mol (16148.8651 without restraints) Performing minimization step: 625. Total energy = 16131.3241 kcal/mol (16121.6866 without restraints) Performing minimization step: 626. Total energy = 16104.2651 kcal/mol (16094.6474 without restraints) Performing minimization step: 627. Total energy = 16077.3437 kcal/mol (16067.7456 without restraints) Performing minimization step: 628. Total energy = 16050.5585 kcal/mol (16040.9797 without restraints) Performing minimization step: 629. Total energy = 16023.9073 kcal/mol (16014.3477 without restraints) Performing minimization step: 630. Total energy = 15997.3888 kcal/mol (15987.8482 without restraints) Performing minimization step: 631. Total energy = 15971.0011 kcal/mol (15961.4793 without restraints) Performing minimization step: 632. Total energy = 15944.7421 kcal/mol (15935.2388 without restraints) Performing minimization step: 633. Total energy = 15918.6108 kcal/mol (15909.1261 without restraints) Performing minimization step: 634. Total energy = 15892.6056 kcal/mol (15883.1392 without restraints) Performing minimization step: 635. Total energy = 15866.7248 kcal/mol (15857.2766 without restraints) Performing minimization step: 636. Total energy = 15840.9669 kcal/mol (15831.5366 without restraints) Performing minimization step: 637. Total energy = 15815.3301 kcal/mol (15805.9176 without restraints) Performing minimization step: 638. Total energy = 15789.8133 kcal/mol (15780.4185 without restraints) Performing minimization step: 639. Total energy = 15764.4151 kcal/mol (15755.0378 without restraints) Performing minimization step: 640. Total energy = 15739.1336 kcal/mol (15729.7736 without restraints) Performing minimization step: 641. Total energy = 15713.9676 kcal/mol (15704.6248 without restraints) Performing minimization step: 642. Total energy = 15688.9155 kcal/mol (15679.5898 without restraints) Performing minimization step: 643. Total energy = 15663.9765 kcal/mol (15654.6676 without restraints) Performing minimization step: 644. Total energy = 15639.1489 kcal/mol (15629.8568 without restraints) Performing minimization step: 645. Total energy = 15614.4314 kcal/mol (15605.1559 without restraints) Performing minimization step: 646. Total energy = 15589.8230 kcal/mol (15580.5639 without restraints) Performing minimization step: 647. Total energy = 15565.3219 kcal/mol (15556.0792 without restraints) Performing minimization step: 648. Total energy = 15540.9266 kcal/mol (15531.7002 without restraints) Performing minimization step: 649. Total energy = 15516.6369 kcal/mol (15507.4265 without restraints) Performing minimization step: 650. Total energy = 15492.4511 kcal/mol (15483.2567 without restraints) Performing minimization step: 651. Total energy = 15468.3680 kcal/mol (15459.1894 without restraints) Performing minimization step: 652. Total energy = 15444.3867 kcal/mol (15435.2238 without restraints) Performing minimization step: 653. Total energy = 15420.5055 kcal/mol (15411.3582 without restraints) Performing minimization step: 654. Total energy = 15396.7237 kcal/mol (15387.5918 without restraints) Performing minimization step: 655. Total energy = 15373.0397 kcal/mol (15363.9232 without restraints) Performing minimization step: 656. Total energy = 15349.4531 kcal/mol (15340.3519 without restraints) Performing minimization step: 657. Total energy = 15325.9627 kcal/mol (15316.8765 without restraints) Performing minimization step: 658. Total energy = 15302.5672 kcal/mol (15293.4961 without restraints) Performing minimization step: 659. Total energy = 15279.2658 kcal/mol (15270.2097 without restraints) Performing minimization step: 660. Total energy = 15256.0574 kcal/mol (15247.0159 without restraints) Performing minimization step: 661. Total energy = 15232.9408 kcal/mol (15223.9141 without restraints) Performing minimization step: 662. Total energy = 15209.9152 kcal/mol (15200.9029 without restraints) Performing minimization step: 663. Total energy = 15186.9798 kcal/mol (15177.9822 without restraints) Performing minimization step: 664. Total energy = 15164.1335 kcal/mol (15155.1503 without restraints) Performing minimization step: 665. Total energy = 15141.3754 kcal/mol (15132.4065 without restraints) Performing minimization step: 666. Total energy = 15118.7045 kcal/mol (15109.7499 without restraints) Performing minimization step: 667. Total energy = 15096.1205 kcal/mol (15087.1799 without restraints) Performing minimization step: 668. Total energy = 15073.6216 kcal/mol (15064.6950 without restraints) Performing minimization step: 669. Total energy = 15051.2075 kcal/mol (15042.2949 without restraints) Performing minimization step: 670. Total energy = 15028.8774 kcal/mol (15019.9786 without restraints) Performing minimization step: 671. Total energy = 15006.6305 kcal/mol (14997.7454 without restraints) Performing minimization step: 672. Total energy = 14984.4656 kcal/mol (14975.5941 without restraints) Performing minimization step: 673. Total energy = 14962.3821 kcal/mol (14953.5243 without restraints) Performing minimization step: 674. Total energy = 14940.3790 kcal/mol (14931.5347 without restraints) Performing minimization step: 675. Total energy = 14918.4559 kcal/mol (14909.6251 without restraints) Performing minimization step: 676. Total energy = 14896.6120 kcal/mol (14887.7945 without restraints) Performing minimization step: 677. Total energy = 14874.8464 kcal/mol (14866.0422 without restraints) Performing minimization step: 678. Total energy = 14853.1585 kcal/mol (14844.3676 without restraints) Performing minimization step: 679. Total energy = 14831.5475 kcal/mol (14822.7696 without restraints) Performing minimization step: 680. Total energy = 14810.0127 kcal/mol (14801.2480 without restraints) Performing minimization step: 681. Total energy = 14788.5536 kcal/mol (14779.8019 without restraints) Performing minimization step: 682. Total energy = 14767.1693 kcal/mol (14758.4305 without restraints) Performing minimization step: 683. Total energy = 14745.8593 kcal/mol (14737.1333 without restraints) Performing minimization step: 684. Total energy = 14724.6227 kcal/mol (14715.9094 without restraints) Performing minimization step: 685. Total energy = 14703.4589 kcal/mol (14694.7583 without restraints) Performing minimization step: 686. Total energy = 14682.3675 kcal/mol (14673.6796 without restraints) Performing minimization step: 687. Total energy = 14661.3476 kcal/mol (14652.6722 without restraints) Performing minimization step: 688. Total energy = 14640.3989 kcal/mol (14631.7363 without restraints) Performing minimization step: 689. Total energy = 14619.5206 kcal/mol (14610.8703 without restraints) Performing minimization step: 690. Total energy = 14598.7121 kcal/mol (14590.0742 without restraints) Performing minimization step: 691. Total energy = 14577.9726 kcal/mol (14569.3470 without restraints) Performing minimization step: 692. Total energy = 14557.3018 kcal/mol (14548.6885 without restraints) Performing minimization step: 693. Total energy = 14536.6991 kcal/mol (14528.0980 without restraints) Performing minimization step: 694. Total energy = 14516.1639 kcal/mol (14507.5750 without restraints) Performing minimization step: 695. Total energy = 14495.6959 kcal/mol (14487.1191 without restraints) Performing minimization step: 696. Total energy = 14475.2942 kcal/mol (14466.7295 without restraints) Performing minimization step: 697. Total energy = 14454.9590 kcal/mol (14446.4063 without restraints) Performing minimization step: 698. Total energy = 14434.6892 kcal/mol (14426.1484 without restraints) Performing minimization step: 699. Total energy = 14414.4837 kcal/mol (14405.9549 without restraints) Performing minimization step: 700. Total energy = 14394.3427 kcal/mol (14385.8257 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 14374.2656 kcal/mol (14365.7604 without restraints) Performing minimization step: 702. Total energy = 14354.2519 kcal/mol (14345.7584 without restraints) Performing minimization step: 703. Total energy = 14334.3012 kcal/mol (14325.8194 without restraints) Performing minimization step: 704. Total energy = 14314.4130 kcal/mol (14305.9429 without restraints) Performing minimization step: 705. Total energy = 14294.5867 kcal/mol (14286.1282 without restraints) Performing minimization step: 706. Total energy = 14274.8221 kcal/mol (14266.3752 without restraints) Performing minimization step: 707. Total energy = 14255.1187 kcal/mol (14246.6833 without restraints) Performing minimization step: 708. Total energy = 14235.4760 kcal/mol (14227.0520 without restraints) Performing minimization step: 709. Total energy = 14215.8935 kcal/mol (14207.4810 without restraints) Performing minimization step: 710. Total energy = 14196.3709 kcal/mol (14187.9697 without restraints) Performing minimization step: 711. Total energy = 14176.9077 kcal/mol (14168.5179 without restraints) Performing minimization step: 712. Total energy = 14157.5034 kcal/mol (14149.1248 without restraints) Performing minimization step: 713. Total energy = 14138.1576 kcal/mol (14129.7903 without restraints) Performing minimization step: 714. Total energy = 14118.8702 kcal/mol (14110.5141 without restraints) Performing minimization step: 715. Total energy = 14099.6409 kcal/mol (14091.2960 without restraints) Performing minimization step: 716. Total energy = 14080.4686 kcal/mol (14072.1349 without restraints) Performing minimization step: 717. Total energy = 14061.3535 kcal/mol (14053.0310 without restraints) Performing minimization step: 718. Total energy = 14042.2955 kcal/mol (14033.9839 without restraints) Performing minimization step: 719. Total energy = 14023.2936 kcal/mol (14014.9931 without restraints) Performing minimization step: 720. Total energy = 14004.3475 kcal/mol (13996.0580 without restraints) Performing minimization step: 721. Total energy = 13985.4577 kcal/mol (13977.1791 without restraints) Performing minimization step: 722. Total energy = 13966.6225 kcal/mol (13958.3550 without restraints) Performing minimization step: 723. Total energy = 13947.8422 kcal/mol (13939.5854 without restraints) Performing minimization step: 724. Total energy = 13929.1164 kcal/mol (13920.8705 without restraints) Performing minimization step: 725. Total energy = 13910.4447 kcal/mol (13902.2097 without restraints) Performing minimization step: 726. Total energy = 13891.8271 kcal/mol (13883.6028 without restraints) Performing minimization step: 727. Total energy = 13873.2629 kcal/mol (13865.0493 without restraints) Performing minimization step: 728. Total energy = 13854.7522 kcal/mol (13846.5494 without restraints) Performing minimization step: 729. Total energy = 13836.2943 kcal/mol (13828.1021 without restraints) Performing minimization step: 730. Total energy = 13817.8886 kcal/mol (13809.7071 without restraints) Performing minimization step: 731. Total energy = 13799.5355 kcal/mol (13791.3647 without restraints) Performing minimization step: 732. Total energy = 13781.2345 kcal/mol (13773.0742 without restraints) Performing minimization step: 733. Total energy = 13762.9852 kcal/mol (13754.8355 without restraints) Performing minimization step: 734. Total energy = 13744.7873 kcal/mol (13736.6482 without restraints) Performing minimization step: 735. Total energy = 13726.6402 kcal/mol (13718.5115 without restraints) Performing minimization step: 736. Total energy = 13708.5442 kcal/mol (13700.4261 without restraints) Performing minimization step: 737. Total energy = 13690.4989 kcal/mol (13682.3912 without restraints) Performing minimization step: 738. Total energy = 13672.5042 kcal/mol (13664.4069 without restraints) Performing minimization step: 739. Total energy = 13654.5589 kcal/mol (13646.4720 without restraints) Performing minimization step: 740. Total energy = 13636.6640 kcal/mol (13628.5874 without restraints) Performing minimization step: 741. Total energy = 13618.8183 kcal/mol (13610.7521 without restraints) Performing minimization step: 742. Total energy = 13601.0216 kcal/mol (13592.9657 without restraints) Performing minimization step: 743. Total energy = 13583.2738 kcal/mol (13575.2282 without restraints) Performing minimization step: 744. Total energy = 13565.5746 kcal/mol (13557.5393 without restraints) Performing minimization step: 745. Total energy = 13547.9235 kcal/mol (13539.8983 without restraints) Performing minimization step: 746. Total energy = 13530.3212 kcal/mol (13522.3062 without restraints) Performing minimization step: 747. Total energy = 13512.7667 kcal/mol (13504.7620 without restraints) Performing minimization step: 748. Total energy = 13495.2601 kcal/mol (13487.2655 without restraints) Performing minimization step: 749. Total energy = 13477.8007 kcal/mol (13469.8162 without restraints) Performing minimization step: 750. Total energy = 13460.3885 kcal/mol (13452.4141 without restraints) Performing minimization step: 751. Total energy = 13443.0232 kcal/mol (13435.0590 without restraints) Performing minimization step: 752. Total energy = 13425.7051 kcal/mol (13417.7509 without restraints) Performing minimization step: 753. Total energy = 13408.4335 kcal/mol (13400.4893 without restraints) Performing minimization step: 754. Total energy = 13391.2078 kcal/mol (13383.2737 without restraints) Performing minimization step: 755. Total energy = 13374.0286 kcal/mol (13366.1045 without restraints) Performing minimization step: 756. Total energy = 13356.8950 kcal/mol (13348.9809 without restraints) Performing minimization step: 757. Total energy = 13339.8073 kcal/mol (13331.9031 without restraints) Performing minimization step: 758. Total energy = 13322.7648 kcal/mol (13314.8705 without restraints) Performing minimization step: 759. Total energy = 13305.7675 kcal/mol (13297.8832 without restraints) Performing minimization step: 760. Total energy = 13288.8156 kcal/mol (13280.9411 without restraints) Performing minimization step: 761. Total energy = 13271.9087 kcal/mol (13264.0441 without restraints) Performing minimization step: 762. Total energy = 13255.0465 kcal/mol (13247.1917 without restraints) Performing minimization step: 763. Total energy = 13238.2285 kcal/mol (13230.3836 without restraints) Performing minimization step: 764. Total energy = 13221.4549 kcal/mol (13213.6198 without restraints) Performing minimization step: 765. Total energy = 13204.7250 kcal/mol (13196.8996 without restraints) Performing minimization step: 766. Total energy = 13188.0388 kcal/mol (13180.2232 without restraints) Performing minimization step: 767. Total energy = 13171.3966 kcal/mol (13163.5907 without restraints) Performing minimization step: 768. Total energy = 13154.7982 kcal/mol (13147.0020 without restraints) Performing minimization step: 769. Total energy = 13138.2427 kcal/mol (13130.4563 without restraints) Performing minimization step: 770. Total energy = 13121.7306 kcal/mol (13113.9539 without restraints) Performing minimization step: 771. Total energy = 13105.2610 kcal/mol (13097.4940 without restraints) Performing minimization step: 772. Total energy = 13088.8345 kcal/mol (13081.0770 without restraints) Performing minimization step: 773. Total energy = 13072.4502 kcal/mol (13064.7024 without restraints) Performing minimization step: 774. Total energy = 13056.1084 kcal/mol (13048.3700 without restraints) Performing minimization step: 775. Total energy = 13039.8089 kcal/mol (13032.0803 without restraints) Performing minimization step: 776. Total energy = 13023.5516 kcal/mol (13015.8325 without restraints) Performing minimization step: 777. Total energy = 13007.3360 kcal/mol (12999.6266 without restraints) Performing minimization step: 778. Total energy = 12991.1623 kcal/mol (12983.4624 without restraints) Performing minimization step: 779. Total energy = 12975.0297 kcal/mol (12967.3393 without restraints) Performing minimization step: 780. Total energy = 12958.9389 kcal/mol (12951.2580 without restraints) Performing minimization step: 781. Total energy = 12942.8894 kcal/mol (12935.2181 without restraints) Performing minimization step: 782. Total energy = 12926.8810 kcal/mol (12919.2190 without restraints) Performing minimization step: 783. Total energy = 12910.9132 kcal/mol (12903.2607 without restraints) Performing minimization step: 784. Total energy = 12894.9863 kcal/mol (12887.3433 without restraints) Performing minimization step: 785. Total energy = 12879.1003 kcal/mol (12871.4667 without restraints) Performing minimization step: 786. Total energy = 12863.2544 kcal/mol (12855.6302 without restraints) Performing minimization step: 787. Total energy = 12847.4489 kcal/mol (12839.8341 without restraints) Performing minimization step: 788. Total energy = 12831.6833 kcal/mol (12824.0779 without restraints) Performing minimization step: 789. Total energy = 12815.9580 kcal/mol (12808.3619 without restraints) Performing minimization step: 790. Total energy = 12800.2725 kcal/mol (12792.6858 without restraints) Performing minimization step: 791. Total energy = 12784.6268 kcal/mol (12777.0493 without restraints) Performing minimization step: 792. Total energy = 12769.0204 kcal/mol (12761.4522 without restraints) Performing minimization step: 793. Total energy = 12753.4536 kcal/mol (12745.8948 without restraints) Performing minimization step: 794. Total energy = 12737.9262 kcal/mol (12730.3766 without restraints) Performing minimization step: 795. Total energy = 12722.4378 kcal/mol (12714.8975 without restraints) Performing minimization step: 796. Total energy = 12706.9887 kcal/mol (12699.4576 without restraints) Performing minimization step: 797. Total energy = 12691.5783 kcal/mol (12684.0565 without restraints) Performing minimization step: 798. Total energy = 12676.2065 kcal/mol (12668.6939 without restraints) Performing minimization step: 799. Total energy = 12660.8732 kcal/mol (12653.3698 without restraints) Performing minimization step: 800. Total energy = 12645.5786 kcal/mol (12638.0844 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 12630.3221 kcal/mol (12622.8372 without restraints) Performing minimization step: 802. Total energy = 12615.1041 kcal/mol (12607.6283 without restraints) Performing minimization step: 803. Total energy = 12599.9242 kcal/mol (12592.4575 without restraints) Performing minimization step: 804. Total energy = 12584.7824 kcal/mol (12577.3249 without restraints) Performing minimization step: 805. Total energy = 12569.6782 kcal/mol (12562.2298 without restraints) Performing minimization step: 806. Total energy = 12554.6117 kcal/mol (12547.1724 without restraints) Performing minimization step: 807. Total energy = 12539.5828 kcal/mol (12532.1525 without restraints) Performing minimization step: 808. Total energy = 12524.5912 kcal/mol (12517.1699 without restraints) Performing minimization step: 809. Total energy = 12509.6372 kcal/mol (12502.2251 without restraints) Performing minimization step: 810. Total energy = 12494.7203 kcal/mol (12487.3172 without restraints) Performing minimization step: 811. Total energy = 12479.8405 kcal/mol (12472.4464 without restraints) Performing minimization step: 812. Total energy = 12464.9976 kcal/mol (12457.6125 without restraints) Performing minimization step: 813. Total energy = 12450.1916 kcal/mol (12442.8155 without restraints) Performing minimization step: 814. Total energy = 12435.4221 kcal/mol (12428.0551 without restraints) Performing minimization step: 815. Total energy = 12420.6893 kcal/mol (12413.3312 without restraints) Performing minimization step: 816. Total energy = 12405.9934 kcal/mol (12398.6444 without restraints) Performing minimization step: 817. Total energy = 12391.3336 kcal/mol (12383.9935 without restraints) Performing minimization step: 818. Total energy = 12376.7102 kcal/mol (12369.3790 without restraints) Performing minimization step: 819. Total energy = 12362.1230 kcal/mol (12354.8007 without restraints) Performing minimization step: 820. Total energy = 12347.5718 kcal/mol (12340.2584 without restraints) Performing minimization step: 821. Total energy = 12333.0566 kcal/mol (12325.7521 without restraints) Performing minimization step: 822. Total energy = 12318.5774 kcal/mol (12311.2818 without restraints) Performing minimization step: 823. Total energy = 12304.1338 kcal/mol (12296.8471 without restraints) Performing minimization step: 824. Total energy = 12289.7258 kcal/mol (12282.4480 without restraints) Performing minimization step: 825. Total energy = 12275.3533 kcal/mol (12268.0843 without restraints) Performing minimization step: 826. Total energy = 12261.0165 kcal/mol (12253.7564 without restraints) Performing minimization step: 827. Total energy = 12246.7144 kcal/mol (12239.4630 without restraints) Performing minimization step: 828. Total energy = 12232.4479 kcal/mol (12225.2053 without restraints) Performing minimization step: 829. Total energy = 12218.2165 kcal/mol (12210.9827 without restraints) Performing minimization step: 830. Total energy = 12204.0201 kcal/mol (12196.7952 without restraints) Performing minimization step: 831. Total energy = 12189.8587 kcal/mol (12182.6425 without restraints) Performing minimization step: 832. Total energy = 12175.7321 kcal/mol (12168.5246 without restraints) Performing minimization step: 833. Total energy = 12161.6401 kcal/mol (12154.4414 without restraints) Performing minimization step: 834. Total energy = 12147.5828 kcal/mol (12140.3928 without restraints) Performing minimization step: 835. Total energy = 12133.5598 kcal/mol (12126.3785 without restraints) Performing minimization step: 836. Total energy = 12119.5714 kcal/mol (12112.3989 without restraints) Performing minimization step: 837. Total energy = 12105.6171 kcal/mol (12098.4533 without restraints) Performing minimization step: 838. Total energy = 12091.6975 kcal/mol (12084.5423 without restraints) Performing minimization step: 839. Total energy = 12077.8117 kcal/mol (12070.6651 without restraints) Performing minimization step: 840. Total energy = 12063.9601 kcal/mol (12056.8223 without restraints) Performing minimization step: 841. Total energy = 12050.1425 kcal/mol (12043.0134 without restraints) Performing minimization step: 842. Total energy = 12036.3583 kcal/mol (12029.2377 without restraints) Performing minimization step: 843. Total energy = 12022.6081 kcal/mol (12015.4962 without restraints) Performing minimization step: 844. Total energy = 12008.8914 kcal/mol (12001.7881 without restraints) Performing minimization step: 845. Total energy = 11995.2085 kcal/mol (11988.1139 without restraints) Performing minimization step: 846. Total energy = 11981.5591 kcal/mol (11974.4731 without restraints) Performing minimization step: 847. Total energy = 11967.9431 kcal/mol (11960.8656 without restraints) Performing minimization step: 848. Total energy = 11954.3602 kcal/mol (11947.2913 without restraints) Performing minimization step: 849. Total energy = 11940.8109 kcal/mol (11933.7506 without restraints) Performing minimization step: 850. Total energy = 11927.2946 kcal/mol (11920.2428 without restraints) Performing minimization step: 851. Total energy = 11913.8116 kcal/mol (11906.7683 without restraints) Performing minimization step: 852. Total energy = 11900.3610 kcal/mol (11893.3263 without restraints) Performing minimization step: 853. Total energy = 11886.9436 kcal/mol (11879.9173 without restraints) Performing minimization step: 854. Total energy = 11873.5589 kcal/mol (11866.5412 without restraints) Performing minimization step: 855. Total energy = 11860.2071 kcal/mol (11853.1979 without restraints) Performing minimization step: 856. Total energy = 11846.8880 kcal/mol (11839.8872 without restraints) Performing minimization step: 857. Total energy = 11833.6011 kcal/mol (11826.6088 without restraints) Performing minimization step: 858. Total energy = 11820.3468 kcal/mol (11813.3629 without restraints) Performing minimization step: 859. Total energy = 11807.1250 kcal/mol (11800.1495 without restraints) Performing minimization step: 860. Total energy = 11793.9350 kcal/mol (11786.9681 without restraints) Performing minimization step: 861. Total energy = 11780.7773 kcal/mol (11773.8188 without restraints) Performing minimization step: 862. Total energy = 11767.6519 kcal/mol (11760.7017 without restraints) Performing minimization step: 863. Total energy = 11754.5585 kcal/mol (11747.6167 without restraints) Performing minimization step: 864. Total energy = 11741.4970 kcal/mol (11734.5636 without restraints) Performing minimization step: 865. Total energy = 11728.4676 kcal/mol (11721.5425 without restraints) Performing minimization step: 866. Total energy = 11715.4697 kcal/mol (11708.5531 without restraints) Performing minimization step: 867. Total energy = 11702.5035 kcal/mol (11695.5952 without restraints) Performing minimization step: 868. Total energy = 11689.5689 kcal/mol (11682.6689 without restraints) Performing minimization step: 869. Total energy = 11676.6660 kcal/mol (11669.7744 without restraints) Performing minimization step: 870. Total energy = 11663.7946 kcal/mol (11656.9113 without restraints) Performing minimization step: 871. Total energy = 11650.9551 kcal/mol (11644.0801 without restraints) Performing minimization step: 872. Total energy = 11638.1463 kcal/mol (11631.2796 without restraints) Performing minimization step: 873. Total energy = 11625.3693 kcal/mol (11618.5109 without restraints) Performing minimization step: 874. Total energy = 11612.6231 kcal/mol (11605.7730 without restraints) Performing minimization step: 875. Total energy = 11599.9080 kcal/mol (11593.0661 without restraints) Performing minimization step: 876. Total energy = 11587.2243 kcal/mol (11580.3907 without restraints) Performing minimization step: 877. Total energy = 11574.5713 kcal/mol (11567.7459 without restraints) Performing minimization step: 878. Total energy = 11561.9490 kcal/mol (11555.1319 without restraints) Performing minimization step: 879. Total energy = 11549.3575 kcal/mol (11542.5486 without restraints) Performing minimization step: 880. Total energy = 11536.7966 kcal/mol (11529.9959 without restraints) Performing minimization step: 881. Total energy = 11524.2665 kcal/mol (11517.4740 without restraints) Performing minimization step: 882. Total energy = 11511.7670 kcal/mol (11504.9826 without restraints) Performing minimization step: 883. Total energy = 11499.2981 kcal/mol (11492.5221 without restraints) Performing minimization step: 884. Total energy = 11486.8596 kcal/mol (11480.0915 without restraints) Performing minimization step: 885. Total energy = 11474.4513 kcal/mol (11467.6916 without restraints) Performing minimization step: 886. Total energy = 11462.0735 kcal/mol (11455.3218 without restraints) Performing minimization step: 887. Total energy = 11449.7260 kcal/mol (11442.9824 without restraints) Performing minimization step: 888. Total energy = 11437.4086 kcal/mol (11430.6731 without restraints) Performing minimization step: 889. Total energy = 11425.1210 kcal/mol (11418.3936 without restraints) Performing minimization step: 890. Total energy = 11412.8635 kcal/mol (11406.1442 without restraints) Performing minimization step: 891. Total energy = 11400.6359 kcal/mol (11393.9248 without restraints) Performing minimization step: 892. Total energy = 11388.4383 kcal/mol (11381.7353 without restraints) Performing minimization step: 893. Total energy = 11376.2706 kcal/mol (11369.5756 without restraints) Performing minimization step: 894. Total energy = 11364.1328 kcal/mol (11357.4458 without restraints) Performing minimization step: 895. Total energy = 11352.0244 kcal/mol (11345.3455 without restraints) Performing minimization step: 896. Total energy = 11339.9455 kcal/mol (11333.2746 without restraints) Performing minimization step: 897. Total energy = 11327.8961 kcal/mol (11321.2332 without restraints) Performing minimization step: 898. Total energy = 11315.8762 kcal/mol (11309.2214 without restraints) Performing minimization step: 899. Total energy = 11303.8857 kcal/mol (11297.2388 without restraints) Performing minimization step: 900. Total energy = 11291.9244 kcal/mol (11285.2855 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 11279.9923 kcal/mol (11273.3614 without restraints) Performing minimization step: 902. Total energy = 11268.0895 kcal/mol (11261.4665 without restraints) Performing minimization step: 903. Total energy = 11256.2157 kcal/mol (11249.6007 without restraints) Performing minimization step: 904. Total energy = 11244.3717 kcal/mol (11237.7646 without restraints) Performing minimization step: 905. Total energy = 11232.5559 kcal/mol (11225.9568 without restraints) Performing minimization step: 906. Total energy = 11220.7691 kcal/mol (11214.1779 without restraints) Performing minimization step: 907. Total energy = 11209.0112 kcal/mol (11202.4280 without restraints) Performing minimization step: 908. Total energy = 11197.2818 kcal/mol (11190.7064 without restraints) Performing minimization step: 909. Total energy = 11185.5813 kcal/mol (11179.0137 without restraints) Performing minimization step: 910. Total energy = 11173.9091 kcal/mol (11167.3493 without restraints) Performing minimization step: 911. Total energy = 11162.2656 kcal/mol (11155.7139 without restraints) Performing minimization step: 912. Total energy = 11150.6510 kcal/mol (11144.1070 without restraints) Performing minimization step: 913. Total energy = 11139.0645 kcal/mol (11132.5284 without restraints) Performing minimization step: 914. Total energy = 11127.5065 kcal/mol (11120.9783 without restraints) Performing minimization step: 915. Total energy = 11115.9768 kcal/mol (11109.4564 without restraints) Performing minimization step: 916. Total energy = 11104.4755 kcal/mol (11097.9629 without restraints) Performing minimization step: 917. Total energy = 11093.0022 kcal/mol (11086.4974 without restraints) Performing minimization step: 918. Total energy = 11081.5570 kcal/mol (11075.0600 without restraints) Performing minimization step: 919. Total energy = 11070.1400 kcal/mol (11063.6508 without restraints) Performing minimization step: 920. Total energy = 11058.7512 kcal/mol (11052.2697 without restraints) Performing minimization step: 921. Total energy = 11047.3903 kcal/mol (11040.9166 without restraints) Performing minimization step: 922. Total energy = 11036.0571 kcal/mol (11029.5911 without restraints) Performing minimization step: 923. Total energy = 11024.7517 kcal/mol (11018.2934 without restraints) Performing minimization step: 924. Total energy = 11013.4740 kcal/mol (11007.0235 without restraints) Performing minimization step: 925. Total energy = 11002.2243 kcal/mol (10995.7815 without restraints) Performing minimization step: 926. Total energy = 10991.0022 kcal/mol (10984.5671 without restraints) Performing minimization step: 927. Total energy = 10979.8077 kcal/mol (10973.3803 without restraints) Performing minimization step: 928. Total energy = 10968.6407 kcal/mol (10962.2210 without restraints) Performing minimization step: 929. Total energy = 10957.5013 kcal/mol (10951.0893 without restraints) Performing minimization step: 930. Total energy = 10946.3892 kcal/mol (10939.9848 without restraints) Performing minimization step: 931. Total energy = 10935.3044 kcal/mol (10928.9076 without restraints) Performing minimization step: 932. Total energy = 10924.2468 kcal/mol (10917.8577 without restraints) Performing minimization step: 933. Total energy = 10913.2164 kcal/mol (10906.8348 without restraints) Performing minimization step: 934. Total energy = 10902.2131 kcal/mol (10895.8392 without restraints) Performing minimization step: 935. Total energy = 10891.2368 kcal/mol (10884.8706 without restraints) Performing minimization step: 936. Total energy = 10880.2878 kcal/mol (10873.9291 without restraints) Performing minimization step: 937. Total energy = 10869.3655 kcal/mol (10863.0143 without restraints) Performing minimization step: 938. Total energy = 10858.4703 kcal/mol (10852.1267 without restraints) Performing minimization step: 939. Total energy = 10847.6017 kcal/mol (10841.2657 without restraints) Performing minimization step: 940. Total energy = 10836.7604 kcal/mol (10830.4319 without restraints) Performing minimization step: 941. Total energy = 10825.9455 kcal/mol (10819.6245 without restraints) Performing minimization step: 942. Total energy = 10815.1580 kcal/mol (10808.8447 without restraints) Performing minimization step: 943. Total energy = 10804.3965 kcal/mol (10798.0906 without restraints) Performing minimization step: 944. Total energy = 10793.6615 kcal/mol (10787.3631 without restraints) Performing minimization step: 945. Total energy = 10782.9530 kcal/mol (10776.6621 without restraints) Performing minimization step: 946. Total energy = 10772.2713 kcal/mol (10765.9878 without restraints) Performing minimization step: 947. Total energy = 10761.6156 kcal/mol (10755.3396 without restraints) Performing minimization step: 948. Total energy = 10750.9862 kcal/mol (10744.7177 without restraints) Performing minimization step: 949. Total energy = 10740.3828 kcal/mol (10734.1217 without restraints) Performing minimization step: 950. Total energy = 10729.8058 kcal/mol (10723.5522 without restraints) Performing minimization step: 951. Total energy = 10719.2550 kcal/mol (10713.0087 without restraints) Performing minimization step: 952. Total energy = 10708.7303 kcal/mol (10702.4914 without restraints) Performing minimization step: 953. Total energy = 10698.2316 kcal/mol (10692.0001 without restraints) Performing minimization step: 954. Total energy = 10687.7588 kcal/mol (10681.5348 without restraints) Performing minimization step: 955. Total energy = 10677.3117 kcal/mol (10671.0950 without restraints) Performing minimization step: 956. Total energy = 10666.8912 kcal/mol (10660.6819 without restraints) Performing minimization step: 957. Total energy = 10656.4957 kcal/mol (10650.2937 without restraints) Performing minimization step: 958. Total energy = 10646.1262 kcal/mol (10639.9316 without restraints) Performing minimization step: 959. Total energy = 10635.7825 kcal/mol (10629.5952 without restraints) Performing minimization step: 960. Total energy = 10625.4642 kcal/mol (10619.2843 without restraints) Performing minimization step: 961. Total energy = 10615.1715 kcal/mol (10608.9988 without restraints) Performing minimization step: 962. Total energy = 10604.9046 kcal/mol (10598.7392 without restraints) Performing minimization step: 963. Total energy = 10594.6626 kcal/mol (10588.5045 without restraints) Performing minimization step: 964. Total energy = 10584.4464 kcal/mol (10578.2955 without restraints) Performing minimization step: 965. Total energy = 10574.2555 kcal/mol (10568.1119 without restraints) Performing minimization step: 966. Total energy = 10564.0898 kcal/mol (10557.9535 without restraints) Performing minimization step: 967. Total energy = 10553.9497 kcal/mol (10547.8210 without restraints) Performing minimization step: 968. Total energy = 10543.8347 kcal/mol (10537.7128 without restraints) Performing minimization step: 969. Total energy = 10533.7444 kcal/mol (10527.6298 without restraints) Performing minimization step: 970. Total energy = 10523.6789 kcal/mol (10517.5715 without restraints) Performing minimization step: 971. Total energy = 10513.6388 kcal/mol (10507.5385 without restraints) Performing minimization step: 972. Total energy = 10503.6236 kcal/mol (10497.5305 without restraints) Performing minimization step: 973. Total energy = 10493.6332 kcal/mol (10487.5473 without restraints) Performing minimization step: 974. Total energy = 10483.6682 kcal/mol (10477.5894 without restraints) Performing minimization step: 975. Total energy = 10473.7275 kcal/mol (10467.6559 without restraints) Performing minimization step: 976. Total energy = 10463.8114 kcal/mol (10457.7469 without restraints) Performing minimization step: 977. Total energy = 10453.9201 kcal/mol (10447.8627 without restraints) Performing minimization step: 978. Total energy = 10444.0533 kcal/mol (10438.0030 without restraints) Performing minimization step: 979. Total energy = 10434.2111 kcal/mol (10428.1679 without restraints) Performing minimization step: 980. Total energy = 10424.3934 kcal/mol (10418.3573 without restraints) Performing minimization step: 981. Total energy = 10414.6003 kcal/mol (10408.5712 without restraints) Performing minimization step: 982. Total energy = 10404.8316 kcal/mol (10398.8096 without restraints) Performing minimization step: 983. Total energy = 10395.0870 kcal/mol (10389.0721 without restraints) Performing minimization step: 984. Total energy = 10385.3666 kcal/mol (10379.3587 without restraints) Performing minimization step: 985. Total energy = 10375.6705 kcal/mol (10369.6696 without restraints) Performing minimization step: 986. Total energy = 10365.9987 kcal/mol (10360.0049 without restraints) Performing minimization step: 987. Total energy = 10356.3509 kcal/mol (10350.3640 without restraints) Performing minimization step: 988. Total energy = 10346.7267 kcal/mol (10340.7468 without restraints) Performing minimization step: 989. Total energy = 10337.1268 kcal/mol (10331.1539 without restraints) Performing minimization step: 990. Total energy = 10327.5509 kcal/mol (10321.5849 without restraints) Performing minimization step: 991. Total energy = 10317.9987 kcal/mol (10312.0397 without restraints) Performing minimization step: 992. Total energy = 10308.4704 kcal/mol (10302.5183 without restraints) Performing minimization step: 993. Total energy = 10298.9661 kcal/mol (10293.0210 without restraints) Performing minimization step: 994. Total energy = 10289.4853 kcal/mol (10283.5471 without restraints) Performing minimization step: 995. Total energy = 10280.0283 kcal/mol (10274.0970 without restraints) Performing minimization step: 996. Total energy = 10270.5948 kcal/mol (10264.6703 without restraints) Performing minimization step: 997. Total energy = 10261.1850 kcal/mol (10255.2675 without restraints) Performing minimization step: 998. Total energy = 10251.7985 kcal/mol (10245.8878 without restraints) Performing minimization step: 999. Total energy = 10242.4352 kcal/mol (10236.5314 without restraints) Performing minimization step: 1000. Total energy = 10233.0955 kcal/mol (10227.1985 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 10223.7791 kcal/mol (10217.8889 without restraints) Performing minimization step: 1002. Total energy = 10214.4860 kcal/mol (10208.6026 without restraints) Performing minimization step: 1003. Total energy = 10205.2158 kcal/mol (10199.3390 without restraints) Performing minimization step: 1004. Total energy = 10195.9688 kcal/mol (10190.0990 without restraints) Performing minimization step: 1005. Total energy = 10186.7451 kcal/mol (10180.8821 without restraints) Performing minimization step: 1006. Total energy = 10177.5445 kcal/mol (10171.6883 without restraints) Performing minimization step: 1007. Total energy = 10168.3669 kcal/mol (10162.5174 without restraints) Performing minimization step: 1008. Total energy = 10159.2122 kcal/mol (10153.3695 without restraints) Performing minimization step: 1009. Total energy = 10150.0804 kcal/mol (10144.2444 without restraints) Performing minimization step: 1010. Total energy = 10140.9714 kcal/mol (10135.1422 without restraints) Performing minimization step: 1011. Total energy = 10131.8852 kcal/mol (10126.0626 without restraints) Performing minimization step: 1012. Total energy = 10122.8217 kcal/mol (10117.0058 without restraints) Performing minimization step: 1013. Total energy = 10113.7810 kcal/mol (10107.9718 without restraints) Performing minimization step: 1014. Total energy = 10104.7628 kcal/mol (10098.9603 without restraints) Performing minimization step: 1015. Total energy = 10095.7671 kcal/mol (10089.9713 without restraints) Performing minimization step: 1016. Total energy = 10086.7940 kcal/mol (10081.0047 without restraints) Performing minimization step: 1017. Total energy = 10077.8432 kcal/mol (10072.0606 without restraints) Performing minimization step: 1018. Total energy = 10068.9149 kcal/mol (10063.1389 without restraints) Performing minimization step: 1019. Total energy = 10060.0086 kcal/mol (10054.2391 without restraints) Performing minimization step: 1020. Total energy = 10051.1246 kcal/mol (10045.3618 without restraints) Performing minimization step: 1021. Total energy = 10042.2634 kcal/mol (10036.5072 without restraints) Performing minimization step: 1022. Total energy = 10033.4243 kcal/mol (10027.6746 without restraints) Performing minimization step: 1023. Total energy = 10024.6071 kcal/mol (10018.8640 without restraints) Performing minimization step: 1024. Total energy = 10015.8119 kcal/mol (10010.0754 without restraints) Performing minimization step: 1025. Total energy = 10007.0390 kcal/mol (10001.3090 without restraints) Performing minimization step: 1026. Total energy = 9998.2879 kcal/mol (9992.5644 without restraints) Performing minimization step: 1027. Total energy = 9989.5585 kcal/mol (9983.8415 without restraints) Performing minimization step: 1028. Total energy = 9980.8510 kcal/mol (9975.1405 without restraints) Performing minimization step: 1029. Total energy = 9972.1658 kcal/mol (9966.4618 without restraints) Performing minimization step: 1030. Total energy = 9963.5017 kcal/mol (9957.8042 without restraints) Performing minimization step: 1031. Total energy = 9954.8597 kcal/mol (9949.1686 without restraints) Performing minimization step: 1032. Total energy = 9946.2392 kcal/mol (9940.5545 without restraints) Performing minimization step: 1033. Total energy = 9937.6405 kcal/mol (9931.9622 without restraints) Performing minimization step: 1034. Total energy = 9929.0629 kcal/mol (9923.3911 without restraints) Performing minimization step: 1035. Total energy = 9920.5070 kcal/mol (9914.8415 without restraints) Performing minimization step: 1036. Total energy = 9911.9725 kcal/mol (9906.3135 without restraints) Performing minimization step: 1037. Total energy = 9903.4593 kcal/mol (9897.8066 without restraints) Performing minimization step: 1038. Total energy = 9894.9673 kcal/mol (9889.3210 without restraints) Performing minimization step: 1039. Total energy = 9886.4968 kcal/mol (9880.8569 without restraints) Performing minimization step: 1040. Total energy = 9878.0473 kcal/mol (9872.4137 without restraints) Performing minimization step: 1041. Total energy = 9869.6183 kcal/mol (9863.9910 without restraints) Performing minimization step: 1042. Total energy = 9861.2112 kcal/mol (9855.5902 without restraints) Performing minimization step: 1043. Total energy = 9852.8250 kcal/mol (9847.2104 without restraints) Performing minimization step: 1044. Total energy = 9844.4598 kcal/mol (9838.8513 without restraints) Performing minimization step: 1045. Total energy = 9836.1154 kcal/mol (9830.5133 without restraints) Performing minimization step: 1046. Total energy = 9827.7927 kcal/mol (9822.1968 without restraints) Performing minimization step: 1047. Total energy = 9819.4904 kcal/mol (9813.9007 without restraints) Performing minimization step: 1048. Total energy = 9811.2087 kcal/mol (9805.6253 without restraints) Performing minimization step: 1049. Total energy = 9802.9473 kcal/mol (9797.3700 without restraints) Performing minimization step: 1050. Total energy = 9794.7067 kcal/mol (9789.1356 without restraints) Performing minimization step: 1051. Total energy = 9786.4866 kcal/mol (9780.9219 without restraints) Performing minimization step: 1052. Total energy = 9778.2873 kcal/mol (9772.7287 without restraints) Performing minimization step: 1053. Total energy = 9770.1084 kcal/mol (9764.5559 without restraints) Performing minimization step: 1054. Total energy = 9761.9501 kcal/mol (9756.4038 without restraints) Performing minimization step: 1055. Total energy = 9753.8122 kcal/mol (9748.2720 without restraints) Performing minimization step: 1056. Total energy = 9745.6944 kcal/mol (9740.1603 without restraints) Performing minimization step: 1057. Total energy = 9737.5969 kcal/mol (9732.0689 without restraints) Performing minimization step: 1058. Total energy = 9729.5196 kcal/mol (9723.9977 without restraints) Performing minimization step: 1059. Total energy = 9721.4619 kcal/mol (9715.9461 without restraints) Performing minimization step: 1060. Total energy = 9713.4251 kcal/mol (9707.9153 without restraints) Performing minimization step: 1061. Total energy = 9705.4081 kcal/mol (9699.9044 without restraints) Performing minimization step: 1062. Total energy = 9697.4109 kcal/mol (9691.9132 without restraints) Performing minimization step: 1063. Total energy = 9689.4340 kcal/mol (9683.9424 without restraints) Performing minimization step: 1064. Total energy = 9681.4768 kcal/mol (9675.9913 without restraints) Performing minimization step: 1065. Total energy = 9673.5396 kcal/mol (9668.0600 without restraints) Performing minimization step: 1066. Total energy = 9665.6220 kcal/mol (9660.1484 without restraints) Performing minimization step: 1067. Total energy = 9657.7244 kcal/mol (9652.2568 without restraints) Performing minimization step: 1068. Total energy = 9649.8458 kcal/mol (9644.3841 without restraints) Performing minimization step: 1069. Total energy = 9641.9872 kcal/mol (9636.5315 without restraints) Performing minimization step: 1070. Total energy = 9634.1483 kcal/mol (9628.6985 without restraints) Performing minimization step: 1071. Total energy = 9626.3288 kcal/mol (9620.8850 without restraints) Performing minimization step: 1072. Total energy = 9618.5288 kcal/mol (9613.0909 without restraints) Performing minimization step: 1073. Total energy = 9610.7478 kcal/mol (9605.3158 without restraints) Performing minimization step: 1074. Total energy = 9602.9866 kcal/mol (9597.5604 without restraints) Performing minimization step: 1075. Total energy = 9595.2446 kcal/mol (9589.8243 without restraints) Performing minimization step: 1076. Total energy = 9587.5220 kcal/mol (9582.1075 without restraints) Performing minimization step: 1077. Total energy = 9579.8184 kcal/mol (9574.4096 without restraints) Performing minimization step: 1078. Total energy = 9572.1339 kcal/mol (9566.7311 without restraints) Performing minimization step: 1079. Total energy = 9564.4686 kcal/mol (9559.0716 without restraints) Performing minimization step: 1080. Total energy = 9556.8223 kcal/mol (9551.4311 without restraints) Performing minimization step: 1081. Total energy = 9549.1948 kcal/mol (9543.8094 without restraints) Performing minimization step: 1082. Total energy = 9541.5863 kcal/mol (9536.2066 without restraints) Performing minimization step: 1083. Total energy = 9533.9971 kcal/mol (9528.6232 without restraints) Performing minimization step: 1084. Total energy = 9526.4264 kcal/mol (9521.0583 without restraints) Performing minimization step: 1085. Total energy = 9518.8744 kcal/mol (9513.5121 without restraints) Performing minimization step: 1086. Total energy = 9511.3416 kcal/mol (9505.9849 without restraints) Performing minimization step: 1087. Total energy = 9503.8270 kcal/mol (9498.4762 without restraints) Performing minimization step: 1088. Total energy = 9496.3311 kcal/mol (9490.9858 without restraints) Performing minimization step: 1089. Total energy = 9488.8537 kcal/mol (9483.5141 without restraints) Performing minimization step: 1090. Total energy = 9481.3947 kcal/mol (9476.0608 without restraints) Performing minimization step: 1091. Total energy = 9473.9545 kcal/mol (9468.6262 without restraints) Performing minimization step: 1092. Total energy = 9466.5323 kcal/mol (9461.2096 without restraints) Performing minimization step: 1093. Total energy = 9459.1283 kcal/mol (9453.8113 without restraints) Performing minimization step: 1094. Total energy = 9451.7429 kcal/mol (9446.4315 without restraints) Performing minimization step: 1095. Total energy = 9444.3754 kcal/mol (9439.0696 without restraints) Performing minimization step: 1096. Total energy = 9437.0261 kcal/mol (9431.7258 without restraints) Performing minimization step: 1097. Total energy = 9429.6949 kcal/mol (9424.4002 without restraints) Performing minimization step: 1098. Total energy = 9422.3818 kcal/mol (9417.0927 without restraints) Performing minimization step: 1099. Total energy = 9415.0867 kcal/mol (9409.8030 without restraints) Performing minimization step: 1100. Total energy = 9407.8093 kcal/mol (9402.5313 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 9400.5501 kcal/mol (9395.2775 without restraints) Performing minimization step: 1102. Total energy = 9393.3088 kcal/mol (9388.0417 without restraints) Performing minimization step: 1103. Total energy = 9386.0851 kcal/mol (9380.8235 without restraints) Performing minimization step: 1104. Total energy = 9378.8790 kcal/mol (9373.6229 without restraints) Performing minimization step: 1105. Total energy = 9371.6906 kcal/mol (9366.4399 without restraints) Performing minimization step: 1106. Total energy = 9364.5200 kcal/mol (9359.2748 without restraints) Performing minimization step: 1107. Total energy = 9357.3667 kcal/mol (9352.1270 without restraints) Performing minimization step: 1108. Total energy = 9350.2312 kcal/mol (9344.9968 without restraints) Performing minimization step: 1109. Total energy = 9343.1132 kcal/mol (9337.8842 without restraints) Performing minimization step: 1110. Total energy = 9336.0124 kcal/mol (9330.7887 without restraints) Performing minimization step: 1111. Total energy = 9328.9288 kcal/mol (9323.7106 without restraints) Performing minimization step: 1112. Total energy = 9321.8626 kcal/mol (9316.6497 without restraints) Performing minimization step: 1113. Total energy = 9314.8136 kcal/mol (9309.6060 without restraints) Performing minimization step: 1114. Total energy = 9307.7818 kcal/mol (9302.5795 without restraints) Performing minimization step: 1115. Total energy = 9300.7671 kcal/mol (9295.5702 without restraints) Performing minimization step: 1116. Total energy = 9293.7695 kcal/mol (9288.5779 without restraints) Performing minimization step: 1117. Total energy = 9286.7892 kcal/mol (9281.6028 without restraints) Performing minimization step: 1118. Total energy = 9279.8255 kcal/mol (9274.6444 without restraints) Performing minimization step: 1119. Total energy = 9272.8788 kcal/mol (9267.7029 without restraints) Performing minimization step: 1120. Total energy = 9265.9485 kcal/mol (9260.7779 without restraints) Performing minimization step: 1121. Total energy = 9259.0354 kcal/mol (9253.8700 without restraints) Performing minimization step: 1122. Total energy = 9252.1392 kcal/mol (9246.9793 without restraints) Performing minimization step: 1123. Total energy = 9245.2598 kcal/mol (9240.1048 without restraints) Performing minimization step: 1124. Total energy = 9238.3972 kcal/mol (9233.2474 without restraints) Performing minimization step: 1125. Total energy = 9231.5508 kcal/mol (9226.4061 without restraints) Performing minimization step: 1126. Total energy = 9224.7208 kcal/mol (9219.5814 without restraints) Performing minimization step: 1127. Total energy = 9217.9075 kcal/mol (9212.7733 without restraints) Performing minimization step: 1128. Total energy = 9211.1106 kcal/mol (9205.9814 without restraints) Performing minimization step: 1129. Total energy = 9204.3300 kcal/mol (9199.2061 without restraints) Performing minimization step: 1130. Total energy = 9197.5658 kcal/mol (9192.4468 without restraints) Performing minimization step: 1131. Total energy = 9190.8178 kcal/mol (9185.7039 without restraints) Performing minimization step: 1132. Total energy = 9184.0861 kcal/mol (9178.9773 without restraints) Performing minimization step: 1133. Total energy = 9177.3704 kcal/mol (9172.2666 without restraints) Performing minimization step: 1134. Total energy = 9170.6713 kcal/mol (9165.5726 without restraints) Performing minimization step: 1135. Total energy = 9163.9883 kcal/mol (9158.8946 without restraints) Performing minimization step: 1136. Total energy = 9157.3207 kcal/mol (9152.2320 without restraints) Performing minimization step: 1137. Total energy = 9150.6690 kcal/mol (9145.5853 without restraints) Performing minimization step: 1138. Total energy = 9144.0332 kcal/mol (9138.9545 without restraints) Performing minimization step: 1139. Total energy = 9137.4137 kcal/mol (9132.3400 without restraints) Performing minimization step: 1140. Total energy = 9130.8095 kcal/mol (9125.7408 without restraints) Performing minimization step: 1141. Total energy = 9124.2213 kcal/mol (9119.1575 without restraints) Performing minimization step: 1142. Total energy = 9117.6488 kcal/mol (9112.5899 without restraints) Performing minimization step: 1143. Total energy = 9111.0913 kcal/mol (9106.0373 without restraints) Performing minimization step: 1144. Total energy = 9104.5494 kcal/mol (9099.5002 without restraints) Performing minimization step: 1145. Total energy = 9098.0231 kcal/mol (9092.9789 without restraints) Performing minimization step: 1146. Total energy = 9091.5125 kcal/mol (9086.4731 without restraints) Performing minimization step: 1147. Total energy = 9085.0173 kcal/mol (9079.9829 without restraints) Performing minimization step: 1148. Total energy = 9078.5373 kcal/mol (9073.5077 without restraints) Performing minimization step: 1149. Total energy = 9072.0731 kcal/mol (9067.0483 without restraints) Performing minimization step: 1150. Total energy = 9065.6242 kcal/mol (9060.6042 without restraints) Performing minimization step: 1151. Total energy = 9059.1900 kcal/mol (9054.1750 without restraints) Performing minimization step: 1152. Total energy = 9052.7711 kcal/mol (9047.7607 without restraints) Performing minimization step: 1153. Total energy = 9046.3669 kcal/mol (9041.3612 without restraints) Performing minimization step: 1154. Total energy = 9039.9780 kcal/mol (9034.9772 without restraints) Performing minimization step: 1155. Total energy = 9033.6040 kcal/mol (9028.6079 without restraints) Performing minimization step: 1156. Total energy = 9027.2452 kcal/mol (9022.2540 without restraints) Performing minimization step: 1157. Total energy = 9020.9007 kcal/mol (9015.9138 without restraints) Performing minimization step: 1158. Total energy = 9014.5708 kcal/mol (9009.5888 without restraints) Performing minimization step: 1159. Total energy = 9008.2558 kcal/mol (9003.2784 without restraints) Performing minimization step: 1160. Total energy = 9001.9555 kcal/mol (8996.9829 without restraints) Performing minimization step: 1161. Total energy = 8995.6701 kcal/mol (8990.7021 without restraints) Performing minimization step: 1162. Total energy = 8989.3991 kcal/mol (8984.4357 without restraints) Performing minimization step: 1163. Total energy = 8983.1427 kcal/mol (8978.1839 without restraints) Performing minimization step: 1164. Total energy = 8976.9009 kcal/mol (8971.9468 without restraints) Performing minimization step: 1165. Total energy = 8970.6740 kcal/mol (8965.7245 without restraints) Performing minimization step: 1166. Total energy = 8964.4607 kcal/mol (8959.5158 without restraints) Performing minimization step: 1167. Total energy = 8958.2622 kcal/mol (8953.3220 without restraints) Performing minimization step: 1168. Total energy = 8952.0778 kcal/mol (8947.1419 without restraints) Performing minimization step: 1169. Total energy = 8945.9073 kcal/mol (8940.9762 without restraints) Performing minimization step: 1170. Total energy = 8939.7512 kcal/mol (8934.8245 without restraints) Performing minimization step: 1171. Total energy = 8933.6090 kcal/mol (8928.6869 without restraints) Performing minimization step: 1172. Total energy = 8927.4808 kcal/mol (8922.5631 without restraints) Performing minimization step: 1173. Total energy = 8921.3669 kcal/mol (8916.4538 without restraints) Performing minimization step: 1174. Total energy = 8915.2670 kcal/mol (8910.3583 without restraints) Performing minimization step: 1175. Total energy = 8909.1810 kcal/mol (8904.2768 without restraints) Performing minimization step: 1176. Total energy = 8903.1089 kcal/mol (8898.2091 without restraints) Performing minimization step: 1177. Total energy = 8897.0507 kcal/mol (8892.1553 without restraints) Performing minimization step: 1178. Total energy = 8891.0057 kcal/mol (8886.1148 without restraints) Performing minimization step: 1179. Total energy = 8884.9748 kcal/mol (8880.0883 without restraints) Performing minimization step: 1180. Total energy = 8878.9575 kcal/mol (8874.0754 without restraints) Performing minimization step: 1181. Total energy = 8872.9537 kcal/mol (8868.0760 without restraints) Performing minimization step: 1182. Total energy = 8866.9632 kcal/mol (8862.0898 without restraints) Performing minimization step: 1183. Total energy = 8860.9865 kcal/mol (8856.1175 without restraints) Performing minimization step: 1184. Total energy = 8855.0233 kcal/mol (8850.1585 without restraints) Performing minimization step: 1185. Total energy = 8849.0735 kcal/mol (8844.2131 without restraints) Performing minimization step: 1186. Total energy = 8843.1369 kcal/mol (8838.2807 without restraints) Performing minimization step: 1187. Total energy = 8837.2137 kcal/mol (8832.3619 without restraints) Performing minimization step: 1188. Total energy = 8831.3036 kcal/mol (8826.4560 without restraints) Performing minimization step: 1189. Total energy = 8825.4067 kcal/mol (8820.5634 without restraints) Performing minimization step: 1190. Total energy = 8819.5228 kcal/mol (8814.6838 without restraints) Performing minimization step: 1191. Total energy = 8813.6521 kcal/mol (8808.8173 without restraints) Performing minimization step: 1192. Total energy = 8807.7943 kcal/mol (8802.9638 without restraints) Performing minimization step: 1193. Total energy = 8801.9499 kcal/mol (8797.1235 without restraints) Performing minimization step: 1194. Total energy = 8796.1179 kcal/mol (8791.2957 without restraints) Performing minimization step: 1195. Total energy = 8790.2990 kcal/mol (8785.4810 without restraints) Performing minimization step: 1196. Total energy = 8784.4925 kcal/mol (8779.6785 without restraints) Performing minimization step: 1197. Total energy = 8778.6989 kcal/mol (8773.8893 without restraints) Performing minimization step: 1198. Total energy = 8772.9183 kcal/mol (8768.1128 without restraints) Performing minimization step: 1199. Total energy = 8767.1501 kcal/mol (8762.3486 without restraints) Performing minimization step: 1200. Total energy = 8761.3944 kcal/mol (8756.5971 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 8755.6515 kcal/mol (8750.8583 without restraints) Performing minimization step: 1202. Total energy = 8749.9208 kcal/mol (8745.1317 without restraints) Performing minimization step: 1203. Total energy = 8744.2024 kcal/mol (8739.4174 without restraints) Performing minimization step: 1204. Total energy = 8738.4967 kcal/mol (8733.7156 without restraints) Performing minimization step: 1205. Total energy = 8732.8027 kcal/mol (8728.0256 without restraints) Performing minimization step: 1206. Total energy = 8727.1214 kcal/mol (8722.3485 without restraints) Performing minimization step: 1207. Total energy = 8721.4526 kcal/mol (8716.6836 without restraints) Performing minimization step: 1208. Total energy = 8715.7956 kcal/mol (8711.0306 without restraints) Performing minimization step: 1209. Total energy = 8710.1510 kcal/mol (8705.3900 without restraints) Performing minimization step: 1210. Total energy = 8704.5184 kcal/mol (8699.7614 without restraints) Performing minimization step: 1211. Total energy = 8698.8978 kcal/mol (8694.1447 without restraints) Performing minimization step: 1212. Total energy = 8693.2891 kcal/mol (8688.5400 without restraints) Performing minimization step: 1213. Total energy = 8687.6926 kcal/mol (8682.9474 without restraints) Performing minimization step: 1214. Total energy = 8682.1076 kcal/mol (8677.3664 without restraints) Performing minimization step: 1215. Total energy = 8676.5348 kcal/mol (8671.7974 without restraints) Performing minimization step: 1216. Total energy = 8670.9735 kcal/mol (8666.2400 without restraints) Performing minimization step: 1217. Total energy = 8665.4240 kcal/mol (8660.6944 without restraints) Performing minimization step: 1218. Total energy = 8659.8861 kcal/mol (8655.1605 without restraints) Performing minimization step: 1219. Total energy = 8654.3599 kcal/mol (8649.6380 without restraints) Performing minimization step: 1220. Total energy = 8648.8451 kcal/mol (8644.1271 without restraints) Performing minimization step: 1221. Total energy = 8643.3416 kcal/mol (8638.6274 without restraints) Performing minimization step: 1222. Total energy = 8637.8498 kcal/mol (8633.1394 without restraints) Performing minimization step: 1223. Total energy = 8632.3694 kcal/mol (8627.6628 without restraints) Performing minimization step: 1224. Total energy = 8626.9005 kcal/mol (8622.1977 without restraints) Performing minimization step: 1225. Total energy = 8621.4428 kcal/mol (8616.7438 without restraints) Performing minimization step: 1226. Total energy = 8615.9964 kcal/mol (8611.3011 without restraints) Performing minimization step: 1227. Total energy = 8610.5612 kcal/mol (8605.8697 without restraints) Performing minimization step: 1228. Total energy = 8605.1372 kcal/mol (8600.4494 without restraints) Performing minimization step: 1229. Total energy = 8599.7240 kcal/mol (8595.0398 without restraints) Performing minimization step: 1230. Total energy = 8594.3221 kcal/mol (8589.6417 without restraints) Performing minimization step: 1231. Total energy = 8588.9313 kcal/mol (8584.2545 without restraints) Performing minimization step: 1232. Total energy = 8583.5516 kcal/mol (8578.8786 without restraints) Performing minimization step: 1233. Total energy = 8578.1831 kcal/mol (8573.5137 without restraints) Performing minimization step: 1234. Total energy = 8572.8250 kcal/mol (8568.1592 without restraints) Performing minimization step: 1235. Total energy = 8567.4777 kcal/mol (8562.8156 without restraints) Performing minimization step: 1236. Total energy = 8562.1413 kcal/mol (8557.4828 without restraints) Performing minimization step: 1237. Total energy = 8556.8155 kcal/mol (8552.1606 without restraints) Performing minimization step: 1238. Total energy = 8551.5006 kcal/mol (8546.8493 without restraints) Performing minimization step: 1239. Total energy = 8546.1962 kcal/mol (8541.5485 without restraints) Performing minimization step: 1240. Total energy = 8540.9023 kcal/mol (8536.2582 without restraints) Performing minimization step: 1241. Total energy = 8535.6190 kcal/mol (8530.9784 without restraints) Performing minimization step: 1242. Total energy = 8530.3460 kcal/mol (8525.7090 without restraints) Performing minimization step: 1243. Total energy = 8525.0840 kcal/mol (8520.4505 without restraints) Performing minimization step: 1244. Total energy = 8519.8320 kcal/mol (8515.2020 without restraints) Performing minimization step: 1245. Total energy = 8514.5903 kcal/mol (8509.9638 without restraints) Performing minimization step: 1246. Total energy = 8509.3589 kcal/mol (8504.7359 without restraints) Performing minimization step: 1247. Total energy = 8504.1379 kcal/mol (8499.5184 without restraints) Performing minimization step: 1248. Total energy = 8498.9270 kcal/mol (8494.3109 without restraints) Performing minimization step: 1249. Total energy = 8493.7262 kcal/mol (8489.1136 without restraints) Performing minimization step: 1250. Total energy = 8488.5357 kcal/mol (8483.9266 without restraints) Performing minimization step: 1251. Total energy = 8483.3553 kcal/mol (8478.7495 without restraints) Performing minimization step: 1252. Total energy = 8478.1846 kcal/mol (8473.5823 without restraints) Performing minimization step: 1253. Total energy = 8473.0240 kcal/mol (8468.4250 without restraints) Performing minimization step: 1254. Total energy = 8467.8732 kcal/mol (8463.2776 without restraints) Performing minimization step: 1255. Total energy = 8462.7322 kcal/mol (8458.1401 without restraints) Performing minimization step: 1256. Total energy = 8457.6008 kcal/mol (8453.0120 without restraints) Performing minimization step: 1257. Total energy = 8452.4794 kcal/mol (8447.8939 without restraints) Performing minimization step: 1258. Total energy = 8447.3678 kcal/mol (8442.7857 without restraints) Performing minimization step: 1259. Total energy = 8442.2657 kcal/mol (8437.6869 without restraints) Performing minimization step: 1260. Total energy = 8437.1734 kcal/mol (8432.5980 without restraints) Performing minimization step: 1261. Total energy = 8432.0908 kcal/mol (8427.5186 without restraints) Performing minimization step: 1262. Total energy = 8427.0176 kcal/mol (8422.4487 without restraints) Performing minimization step: 1263. Total energy = 8421.9542 kcal/mol (8417.3886 without restraints) Performing minimization step: 1264. Total energy = 8416.9000 kcal/mol (8412.3377 without restraints) Performing minimization step: 1265. Total energy = 8411.8553 kcal/mol (8407.2962 without restraints) Performing minimization step: 1266. Total energy = 8406.8200 kcal/mol (8402.2642 without restraints) Performing minimization step: 1267. Total energy = 8401.7940 kcal/mol (8397.2413 without restraints) Performing minimization step: 1268. Total energy = 8396.7771 kcal/mol (8392.2277 without restraints) Performing minimization step: 1269. Total energy = 8391.7696 kcal/mol (8387.2236 without restraints) Performing minimization step: 1270. Total energy = 8386.7713 kcal/mol (8382.2283 without restraints) Performing minimization step: 1271. Total energy = 8381.7821 kcal/mol (8377.2422 without restraints) Performing minimization step: 1272. Total energy = 8376.8019 kcal/mol (8372.2652 without restraints) Performing minimization step: 1273. Total energy = 8371.8305 kcal/mol (8367.2970 without restraints) Performing minimization step: 1274. Total energy = 8366.8686 kcal/mol (8362.3383 without restraints) Performing minimization step: 1275. Total energy = 8361.9153 kcal/mol (8357.3880 without restraints) Performing minimization step: 1276. Total energy = 8356.9706 kcal/mol (8352.4464 without restraints) Performing minimization step: 1277. Total energy = 8352.0351 kcal/mol (8347.5141 without restraints) Performing minimization step: 1278. Total energy = 8347.1087 kcal/mol (8342.5908 without restraints) Performing minimization step: 1279. Total energy = 8342.1903 kcal/mol (8337.6755 without restraints) Performing minimization step: 1280. Total energy = 8337.2812 kcal/mol (8332.7694 without restraints) Performing minimization step: 1281. Total energy = 8332.3806 kcal/mol (8327.8719 without restraints) Performing minimization step: 1282. Total energy = 8327.4889 kcal/mol (8322.9833 without restraints) Performing minimization step: 1283. Total energy = 8322.6058 kcal/mol (8318.1032 without restraints) Performing minimization step: 1284. Total energy = 8317.7312 kcal/mol (8313.2316 without restraints) Performing minimization step: 1285. Total energy = 8312.8652 kcal/mol (8308.3686 without restraints) Performing minimization step: 1286. Total energy = 8308.0075 kcal/mol (8303.5139 without restraints) Performing minimization step: 1287. Total energy = 8303.1583 kcal/mol (8298.6677 without restraints) Performing minimization step: 1288. Total energy = 8298.3175 kcal/mol (8293.8299 without restraints) Performing minimization step: 1289. Total energy = 8293.4851 kcal/mol (8289.0004 without restraints) Performing minimization step: 1290. Total energy = 8288.6606 kcal/mol (8284.1789 without restraints) Performing minimization step: 1291. Total energy = 8283.8447 kcal/mol (8279.3660 without restraints) Performing minimization step: 1292. Total energy = 8279.0370 kcal/mol (8274.5610 without restraints) Performing minimization step: 1293. Total energy = 8274.2373 kcal/mol (8269.7644 without restraints) Performing minimization step: 1294. Total energy = 8269.4461 kcal/mol (8264.9760 without restraints) Performing minimization step: 1295. Total energy = 8264.6627 kcal/mol (8260.1956 without restraints) Performing minimization step: 1296. Total energy = 8259.8874 kcal/mol (8255.4232 without restraints) Performing minimization step: 1297. Total energy = 8255.1199 kcal/mol (8250.6585 without restraints) Performing minimization step: 1298. Total energy = 8250.3606 kcal/mol (8245.9022 without restraints) Performing minimization step: 1299. Total energy = 8245.6093 kcal/mol (8241.1536 without restraints) Performing minimization step: 1300. Total energy = 8240.8653 kcal/mol (8236.4124 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 8236.1298 kcal/mol (8231.6798 without restraints) Performing minimization step: 1302. Total energy = 8231.4018 kcal/mol (8226.9546 without restraints) Performing minimization step: 1303. Total energy = 8226.6812 kcal/mol (8222.2368 without restraints) Performing minimization step: 1304. Total energy = 8221.9685 kcal/mol (8217.5269 without restraints) Performing minimization step: 1305. Total energy = 8217.2637 kcal/mol (8212.8249 without restraints) Performing minimization step: 1306. Total energy = 8212.5663 kcal/mol (8208.1303 without restraints) Performing minimization step: 1307. Total energy = 8207.8767 kcal/mol (8203.4434 without restraints) Performing minimization step: 1308. Total energy = 8203.1946 kcal/mol (8198.7640 without restraints) Performing minimization step: 1309. Total energy = 8198.5202 kcal/mol (8194.0924 without restraints) Performing minimization step: 1310. Total energy = 8193.8530 kcal/mol (8189.4279 without restraints) Performing minimization step: 1311. Total energy = 8189.1933 kcal/mol (8184.7709 without restraints) Performing minimization step: 1312. Total energy = 8184.5410 kcal/mol (8180.1212 without restraints) Performing minimization step: 1313. Total energy = 8179.8957 kcal/mol (8175.4789 without restraints) Performing minimization step: 1314. Total energy = 8175.2581 kcal/mol (8170.8438 without restraints) Performing minimization step: 1315. Total energy = 8170.6275 kcal/mol (8166.2159 without restraints) Performing minimization step: 1316. Total energy = 8166.0042 kcal/mol (8161.5953 without restraints) Performing minimization step: 1317. Total energy = 8161.3908 kcal/mol (8156.9855 without restraints) Performing minimization step: 1318. Total energy = 8159.6408 kcal/mol (8156.0418 without restraints) Performing minimization step: 1319. Total energy = 8156.8913 kcal/mol (8153.2692 without restraints) Performing minimization step: 1320. Total energy = 8156.5101 kcal/mol (8152.7002 without restraints) Performing minimization step: 1321. Total energy = 8156.2485 kcal/mol (8152.4404 without restraints) Performing minimization step: 1322. Total energy = 8155.9482 kcal/mol (8152.1597 without restraints) Performing minimization step: 1323. Total energy = 8155.6452 kcal/mol (8151.8627 without restraints) Performing minimization step: 1324. Total energy = 8155.3340 kcal/mol (8151.5486 without restraints) Performing minimization step: 1325. Total energy = 8155.0207 kcal/mol (8151.2308 without restraints) Performing minimization step: 1326. Total energy = 8154.7083 kcal/mol (8150.9182 without restraints) Performing minimization step: 1327. Total energy = 8154.3852 kcal/mol (8150.5897 without restraints) Performing minimization step: 1328. Total energy = 8154.0686 kcal/mol (8150.2738 without restraints) Performing minimization step: 1329. Total energy = 8153.7380 kcal/mol (8149.9384 without restraints) Performing minimization step: 1330. Total energy = 8153.4166 kcal/mol (8149.6182 without restraints) Performing minimization step: 1331. Total energy = 8153.0807 kcal/mol (8149.2778 without restraints) Performing minimization step: 1332. Total energy = 8152.7547 kcal/mol (8148.9533 without restraints) Performing minimization step: 1333. Total energy = 8152.4145 kcal/mol (8148.6088 without restraints) Performing minimization step: 1334. Total energy = 8152.0846 kcal/mol (8148.2806 without restraints) Performing minimization step: 1335. Total energy = 8151.7407 kcal/mol (8147.9328 without restraints) Performing minimization step: 1336. Total energy = 8151.4074 kcal/mol (8147.6013 without restraints) Performing minimization step: 1337. Total energy = 8151.0604 kcal/mol (8147.2505 without restraints) Performing minimization step: 1338. Total energy = 8150.7241 kcal/mol (8146.9164 without restraints) Performing minimization step: 1339. Total energy = 8150.3745 kcal/mol (8146.5631 without restraints) Performing minimization step: 1340. Total energy = 8150.0360 kcal/mol (8146.2269 without restraints) Performing minimization step: 1341. Total energy = 8149.6842 kcal/mol (8145.8716 without restraints) Performing minimization step: 1342. Total energy = 8149.3435 kcal/mol (8145.5333 without restraints) Performing minimization step: 1343. Total energy = 8148.9922 kcal/mol (8145.1763 without restraints) Performing minimization step: 1344. Total energy = 8148.6475 kcal/mol (8144.8363 without restraints) Performing minimization step: 1345. Total energy = 8148.2945 kcal/mol (8144.4780 without restraints) Performing minimization step: 1346. Total energy = 8147.9486 kcal/mol (8144.1368 without restraints) Performing minimization step: 1347. Total energy = 8147.5942 kcal/mol (8143.7773 without restraints) Performing minimization step: 1348. Total energy = 8147.2474 kcal/mol (8143.4351 without restraints) Performing minimization step: 1349. Total energy = 8146.8919 kcal/mol (8143.0748 without restraints) Performing minimization step: 1350. Total energy = 8146.5443 kcal/mol (8142.7317 without restraints) Performing minimization step: 1351. Total energy = 8146.1879 kcal/mol (8142.3706 without restraints) Performing minimization step: 1352. Total energy = 8145.8398 kcal/mol (8142.0269 without restraints) Performing minimization step: 1353. Total energy = 8145.4827 kcal/mol (8141.6654 without restraints) Performing minimization step: 1354. Total energy = 8145.1341 kcal/mol (8141.3211 without restraints) Performing minimization step: 1355. Total energy = 8144.7766 kcal/mol (8140.9593 without restraints) Performing minimization step: 1356. Total energy = 8144.4278 kcal/mol (8140.6149 without restraints) Performing minimization step: 1357. Total energy = 8144.0700 kcal/mol (8140.2528 without restraints) Performing minimization step: 1358. Total energy = 8143.7232 kcal/mol (8139.9081 without restraints) Performing minimization step: 1359. Total energy = 8143.3629 kcal/mol (8139.5458 without restraints) Performing minimization step: 1360. Total energy = 8143.0159 kcal/mol (8139.2010 without restraints) Performing minimization step: 1361. Total energy = 8142.6555 kcal/mol (8138.8386 without restraints) Performing minimization step: 1362. Total energy = 8142.3086 kcal/mol (8138.4938 without restraints) Performing minimization step: 1363. Total energy = 8141.9482 kcal/mol (8138.1315 without restraints) Performing minimization step: 1364. Total energy = 8141.6013 kcal/mol (8137.7868 without restraints) Performing minimization step: 1365. Total energy = 8141.2410 kcal/mol (8137.4246 without restraints) Performing minimization step: 1366. Total energy = 8140.8942 kcal/mol (8137.0800 without restraints) Performing minimization step: 1367. Total energy = 8140.5341 kcal/mol (8136.7180 without restraints) Performing minimization step: 1368. Total energy = 8140.1875 kcal/mol (8136.3736 without restraints) Performing minimization step: 1369. Total energy = 8139.8275 kcal/mol (8136.0118 without restraints) Performing minimization step: 1370. Total energy = 8139.4812 kcal/mol (8135.6677 without restraints) Performing minimization step: 1371. Total energy = 8139.1215 kcal/mol (8135.3061 without restraints) Performing minimization step: 1372. Total energy = 8138.7755 kcal/mol (8134.9623 without restraints) Performing minimization step: 1373. Total energy = 8138.4161 kcal/mol (8134.6011 without restraints) Performing minimization step: 1374. Total energy = 8138.0680 kcal/mol (8134.2575 without restraints) Performing minimization step: 1375. Total energy = 8137.7113 kcal/mol (8133.8967 without restraints) Performing minimization step: 1376. Total energy = 8137.3636 kcal/mol (8133.5535 without restraints) Performing minimization step: 1377. Total energy = 8137.0072 kcal/mol (8133.1930 without restraints) Performing minimization step: 1378. Total energy = 8136.6598 kcal/mol (8132.8502 without restraints) Performing minimization step: 1379. Total energy = 8136.3039 kcal/mol (8132.4901 without restraints) Performing minimization step: 1380. Total energy = 8135.9568 kcal/mol (8132.1477 without restraints) Performing minimization step: 1381. Total energy = 8135.6014 kcal/mol (8131.7880 without restraints) Performing minimization step: 1382. Total energy = 8135.2547 kcal/mol (8131.4460 without restraints) Performing minimization step: 1383. Total energy = 8134.8997 kcal/mol (8131.0868 without restraints) Performing minimization step: 1384. Total energy = 8134.5534 kcal/mol (8130.7452 without restraints) Performing minimization step: 1385. Total energy = 8134.1989 kcal/mol (8130.3864 without restraints) Performing minimization step: 1386. Total energy = 8133.8530 kcal/mol (8130.0453 without restraints) Performing minimization step: 1387. Total energy = 8133.4990 kcal/mol (8129.6869 without restraints) Performing minimization step: 1388. Total energy = 8133.1535 kcal/mol (8129.3463 without restraints) Performing minimization step: 1389. Total energy = 8132.8000 kcal/mol (8128.9884 without restraints) Performing minimization step: 1390. Total energy = 8132.4549 kcal/mol (8128.6483 without restraints) Performing minimization step: 1391. Total energy = 8132.1019 kcal/mol (8128.2908 without restraints) Performing minimization step: 1392. Total energy = 8131.7572 kcal/mol (8127.9511 without restraints) Performing minimization step: 1393. Total energy = 8131.4048 kcal/mol (8127.5941 without restraints) Performing minimization step: 1394. Total energy = 8131.0606 kcal/mol (8127.2549 without restraints) Performing minimization step: 1395. Total energy = 8130.7086 kcal/mol (8126.8985 without restraints) Performing minimization step: 1396. Total energy = 8130.3649 kcal/mol (8126.5597 without restraints) Performing minimization step: 1397. Total energy = 8130.0135 kcal/mol (8126.2038 without restraints) Performing minimization step: 1398. Total energy = 8129.6701 kcal/mol (8125.8655 without restraints) Performing minimization step: 1399. Total energy = 8129.3192 kcal/mol (8125.5100 without restraints) Performing minimization step: 1400. Total energy = 8128.9765 kcal/mol (8125.1725 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 8128.6262 kcal/mol (8124.8175 without restraints) Performing minimization step: 1402. Total energy = 8128.2837 kcal/mol (8124.4802 without restraints) Performing minimization step: 1403. Total energy = 8127.9339 kcal/mol (8124.1257 without restraints) Performing minimization step: 1404. Total energy = 8127.5917 kcal/mol (8123.7886 without restraints) Performing minimization step: 1405. Total energy = 8127.2424 kcal/mol (8123.4346 without restraints) Performing minimization step: 1406. Total energy = 8126.9008 kcal/mol (8123.0983 without restraints) Performing minimization step: 1407. Total energy = 8126.5521 kcal/mol (8122.7448 without restraints) Performing minimization step: 1408. Total energy = 8126.2110 kcal/mol (8122.4090 without restraints) Performing minimization step: 1409. Total energy = 8125.8605 kcal/mol (8122.0559 without restraints) Performing minimization step: 1410. Total energy = 8125.5221 kcal/mol (8121.7207 without restraints) Performing minimization step: 1411. Total energy = 8125.1721 kcal/mol (8121.3681 without restraints) Performing minimization step: 1412. Total energy = 8124.8343 kcal/mol (8121.0334 without restraints) Performing minimization step: 1413. Total energy = 8124.4847 kcal/mol (8120.6813 without restraints) Performing minimization step: 1414. Total energy = 8124.1473 kcal/mol (8120.3470 without restraints) Performing minimization step: 1415. Total energy = 8123.7983 kcal/mol (8119.9954 without restraints) Performing minimization step: 1416. Total energy = 8123.4615 kcal/mol (8119.6616 without restraints) Performing minimization step: 1417. Total energy = 8123.1129 kcal/mol (8119.3105 without restraints) Performing minimization step: 1418. Total energy = 8122.7766 kcal/mol (8118.9773 without restraints) Performing minimization step: 1419. Total energy = 8122.4285 kcal/mol (8118.6266 without restraints) Performing minimization step: 1420. Total energy = 8122.0926 kcal/mol (8118.2939 without restraints) Performing minimization step: 1421. Total energy = 8121.7451 kcal/mol (8117.9437 without restraints) Performing minimization step: 1422. Total energy = 8121.4097 kcal/mol (8117.6115 without restraints) Performing minimization step: 1423. Total energy = 8121.0626 kcal/mol (8117.2618 without restraints) Performing minimization step: 1424. Total energy = 8120.7277 kcal/mol (8116.9300 without restraints) Performing minimization step: 1425. Total energy = 8120.3811 kcal/mol (8116.5808 without restraints) Performing minimization step: 1426. Total energy = 8120.0467 kcal/mol (8116.2496 without restraints) Performing minimization step: 1427. Total energy = 8119.7006 kcal/mol (8115.9009 without restraints) Performing minimization step: 1428. Total energy = 8119.3667 kcal/mol (8115.5701 without restraints) Performing minimization step: 1429. Total energy = 8119.0211 kcal/mol (8115.2218 without restraints) Performing minimization step: 1430. Total energy = 8118.6877 kcal/mol (8114.8915 without restraints) Performing minimization step: 1431. Total energy = 8118.3425 kcal/mol (8114.5438 without restraints) Performing minimization step: 1432. Total energy = 8118.0096 kcal/mol (8114.2140 without restraints) Performing minimization step: 1433. Total energy = 8117.6649 kcal/mol (8113.8667 without restraints) Performing minimization step: 1434. Total energy = 8117.3324 kcal/mol (8113.5374 without restraints) Performing minimization step: 1435. Total energy = 8116.9883 kcal/mol (8113.1906 without restraints) Performing minimization step: 1436. Total energy = 8116.6563 kcal/mol (8112.8617 without restraints) Performing minimization step: 1437. Total energy = 8116.3126 kcal/mol (8112.5154 without restraints) Performing minimization step: 1438. Total energy = 8115.9811 kcal/mol (8112.1870 without restraints) Performing minimization step: 1439. Total energy = 8115.6378 kcal/mol (8111.8412 without restraints) Performing minimization step: 1440. Total energy = 8115.3068 kcal/mol (8111.5133 without restraints) Performing minimization step: 1441. Total energy = 8114.9640 kcal/mol (8111.1679 without restraints) Performing minimization step: 1442. Total energy = 8114.6335 kcal/mol (8110.8405 without restraints) Performing minimization step: 1443. Total energy = 8114.2912 kcal/mol (8110.4956 without restraints) Performing minimization step: 1444. Total energy = 8113.9611 kcal/mol (8110.1686 without restraints) Performing minimization step: 1445. Total energy = 8113.6193 kcal/mol (8109.8242 without restraints) Performing minimization step: 1446. Total energy = 8113.2896 kcal/mol (8109.4977 without restraints) Performing minimization step: 1447. Total energy = 8112.9483 kcal/mol (8109.1537 without restraints) Performing minimization step: 1448. Total energy = 8112.6191 kcal/mol (8108.8277 without restraints) Performing minimization step: 1449. Total energy = 8112.2782 kcal/mol (8108.4842 without restraints) Performing minimization step: 1450. Total energy = 8111.9495 kcal/mol (8108.1586 without restraints) Performing minimization step: 1451. Total energy = 8111.6091 kcal/mol (8107.8156 without restraints) Performing minimization step: 1452. Total energy = 8111.2809 kcal/mol (8107.4905 without restraints) Performing minimization step: 1453. Total energy = 8110.9409 kcal/mol (8107.1479 without restraints) Performing minimization step: 1454. Total energy = 8110.6132 kcal/mol (8106.8232 without restraints) Performing minimization step: 1455. Total energy = 8110.2737 kcal/mol (8106.4811 without restraints) Performing minimization step: 1456. Total energy = 8109.9463 kcal/mol (8106.1569 without restraints) Performing minimization step: 1457. Total energy = 8109.6073 kcal/mol (8105.8153 without restraints) Performing minimization step: 1458. Total energy = 8109.2804 kcal/mol (8105.4915 without restraints) Performing minimization step: 1459. Total energy = 8108.9418 kcal/mol (8105.1503 without restraints) Performing minimization step: 1460. Total energy = 8108.6154 kcal/mol (8104.8270 without restraints) Performing minimization step: 1461. Total energy = 8108.2773 kcal/mol (8104.4863 without restraints) Performing minimization step: 1462. Total energy = 8107.9513 kcal/mol (8104.1635 without restraints) Performing minimization step: 1463. Total energy = 8107.6137 kcal/mol (8103.8231 without restraints) Performing minimization step: 1464. Total energy = 8107.2882 kcal/mol (8103.5008 without restraints) Performing minimization step: 1465. Total energy = 8106.9509 kcal/mol (8103.1609 without restraints) Performing minimization step: 1466. Total energy = 8106.6259 kcal/mol (8102.8390 without restraints) Performing minimization step: 1467. Total energy = 8106.2891 kcal/mol (8102.4996 without restraints) Performing minimization step: 1468. Total energy = 8105.9645 kcal/mol (8102.1781 without restraints) Performing minimization step: 1469. Total energy = 8105.6282 kcal/mol (8101.8391 without restraints) Performing minimization step: 1470. Total energy = 8105.3040 kcal/mol (8101.5181 without restraints) Performing minimization step: 1471. Total energy = 8104.9681 kcal/mol (8101.1796 without restraints) Performing minimization step: 1472. Total energy = 8104.6444 kcal/mol (8100.8590 without restraints) Performing minimization step: 1473. Total energy = 8104.3089 kcal/mol (8100.5209 without restraints) Performing minimization step: 1474. Total energy = 8103.9857 kcal/mol (8100.2008 without restraints) Performing minimization step: 1475. Total energy = 8103.6506 kcal/mol (8099.8631 without restraints) Performing minimization step: 1476. Total energy = 8103.3278 kcal/mol (8099.5434 without restraints) Performing minimization step: 1477. Total energy = 8102.9932 kcal/mol (8099.2062 without restraints) Performing minimization step: 1478. Total energy = 8102.6708 kcal/mol (8098.8869 without restraints) Performing minimization step: 1479. Total energy = 8102.3369 kcal/mol (8098.5504 without restraints) Performing minimization step: 1480. Total energy = 8102.0149 kcal/mol (8098.2315 without restraints) Performing minimization step: 1481. Total energy = 8101.6812 kcal/mol (8097.8952 without restraints) Performing minimization step: 1482. Total energy = 8101.3597 kcal/mol (8097.5768 without restraints) Performing minimization step: 1483. Total energy = 8101.0265 kcal/mol (8097.2411 without restraints) Performing minimization step: 1484. Total energy = 8100.7057 kcal/mol (8096.9233 without restraints) Performing minimization step: 1485. Total energy = 8100.3729 kcal/mol (8096.5879 without restraints) Performing minimization step: 1486. Total energy = 8100.0523 kcal/mol (8096.2703 without restraints) Performing minimization step: 1487. Total energy = 8099.7198 kcal/mol (8095.9353 without restraints) Performing minimization step: 1488. Total energy = 8099.3996 kcal/mol (8095.6182 without restraints) Performing minimization step: 1489. Total energy = 8099.0676 kcal/mol (8095.2835 without restraints) Performing minimization step: 1490. Total energy = 8098.7478 kcal/mol (8094.9669 without restraints) Performing minimization step: 1491. Total energy = 8098.4163 kcal/mol (8094.6327 without restraints) Performing minimization step: 1492. Total energy = 8098.0969 kcal/mol (8094.3164 without restraints) Performing minimization step: 1493. Total energy = 8097.7658 kcal/mol (8093.9826 without restraints) Performing minimization step: 1494. Total energy = 8097.4468 kcal/mol (8093.6668 without restraints) Performing minimization step: 1495. Total energy = 8097.1161 kcal/mol (8093.3335 without restraints) Performing minimization step: 1496. Total energy = 8096.7976 kcal/mol (8093.0181 without restraints) Performing minimization step: 1497. Total energy = 8096.4673 kcal/mol (8092.6851 without restraints) Performing minimization step: 1498. Total energy = 8096.1492 kcal/mol (8092.3701 without restraints) Performing minimization step: 1499. Total energy = 8095.8193 kcal/mol (8092.0376 without restraints) Performing minimization step: 1500. Total energy = 8095.5016 kcal/mol (8091.7231 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 8095.1722 kcal/mol (8091.3910 without restraints) Performing minimization step: 1502. Total energy = 8094.8549 kcal/mol (8091.0768 without restraints) Performing minimization step: 1503. Total energy = 8094.5258 kcal/mol (8090.7451 without restraints) Performing minimization step: 1504. Total energy = 8094.2090 kcal/mol (8090.4314 without restraints) Performing minimization step: 1505. Total energy = 8093.8804 kcal/mol (8090.1001 without restraints) Performing minimization step: 1506. Total energy = 8093.5639 kcal/mol (8089.7868 without restraints) Performing minimization step: 1507. Total energy = 8093.2357 kcal/mol (8089.4560 without restraints) Performing minimization step: 1508. Total energy = 8092.9197 kcal/mol (8089.1431 without restraints) Performing minimization step: 1509. Total energy = 8092.5919 kcal/mol (8088.8126 without restraints) Performing minimization step: 1510. Total energy = 8092.2763 kcal/mol (8088.5001 without restraints) Performing minimization step: 1511. Total energy = 8091.9489 kcal/mol (8088.1701 without restraints) Performing minimization step: 1512. Total energy = 8091.6337 kcal/mol (8087.8580 without restraints) Performing minimization step: 1513. Total energy = 8091.3067 kcal/mol (8087.5284 without restraints) Performing minimization step: 1514. Total energy = 8090.9919 kcal/mol (8087.2167 without restraints) Performing minimization step: 1515. Total energy = 8090.6653 kcal/mol (8086.8875 without restraints) Performing minimization step: 1516. Total energy = 8090.3509 kcal/mol (8086.5762 without restraints) Performing minimization step: 1517. Total energy = 8090.0248 kcal/mol (8086.2474 without restraints) Performing minimization step: 1518. Total energy = 8089.7108 kcal/mol (8085.9365 without restraints) Performing minimization step: 1519. Total energy = 8089.3850 kcal/mol (8085.6081 without restraints) Performing minimization step: 1520. Total energy = 8089.0714 kcal/mol (8085.2976 without restraints) Performing minimization step: 1521. Total energy = 8088.7461 kcal/mol (8084.9696 without restraints) Performing minimization step: 1522. Total energy = 8088.4329 kcal/mol (8084.6596 without restraints) Performing minimization step: 1523. Total energy = 8088.1079 kcal/mol (8084.3320 without restraints) Performing minimization step: 1524. Total energy = 8087.7950 kcal/mol (8084.0221 without restraints) Performing minimization step: 1525. Total energy = 8087.4704 kcal/mol (8083.6949 without restraints) Performing minimization step: 1526. Total energy = 8087.1580 kcal/mol (8083.3856 without restraints) Performing minimization step: 1527. Total energy = 8086.8338 kcal/mol (8083.0588 without restraints) Performing minimization step: 1528. Total energy = 8086.5218 kcal/mol (8082.7499 without restraints) Performing minimization step: 1529. Total energy = 8086.1981 kcal/mol (8082.4235 without restraints) Performing minimization step: 1530. Total energy = 8085.8865 kcal/mol (8082.1151 without restraints) Performing minimization step: 1531. Total energy = 8085.5631 kcal/mol (8081.7890 without restraints) Performing minimization step: 1532. Total energy = 8085.2519 kcal/mol (8081.4809 without restraints) Performing minimization step: 1533. Total energy = 8084.9289 kcal/mol (8081.1553 without restraints) Performing minimization step: 1534. Total energy = 8084.6181 kcal/mol (8080.8476 without restraints) Performing minimization step: 1535. Total energy = 8084.2955 kcal/mol (8080.5224 without restraints) Performing minimization step: 1536. Total energy = 8083.9851 kcal/mol (8080.2151 without restraints) Performing minimization step: 1537. Total energy = 8083.6629 kcal/mol (8079.8902 without restraints) Performing minimization step: 1538. Total energy = 8083.3529 kcal/mol (8079.5833 without restraints) Performing minimization step: 1539. Total energy = 8083.0311 kcal/mol (8079.2588 without restraints) Performing minimization step: 1540. Total energy = 8082.7214 kcal/mol (8078.9523 without restraints) Performing minimization step: 1541. Total energy = 8082.4000 kcal/mol (8078.6282 without restraints) Performing minimization step: 1542. Total energy = 8082.0908 kcal/mol (8078.3221 without restraints) Performing minimization step: 1543. Total energy = 8081.7697 kcal/mol (8077.9984 without restraints) Performing minimization step: 1544. Total energy = 8081.4609 kcal/mol (8077.6927 without restraints) Performing minimization step: 1545. Total energy = 8081.1402 kcal/mol (8077.3694 without restraints) Performing minimization step: 1546. Total energy = 8080.8317 kcal/mol (8077.0640 without restraints) Performing minimization step: 1547. Total energy = 8080.5115 kcal/mol (8076.7411 without restraints) Performing minimization step: 1548. Total energy = 8080.2034 kcal/mol (8076.4361 without restraints) Performing minimization step: 1549. Total energy = 8079.8835 kcal/mol (8076.1135 without restraints) Performing minimization step: 1550. Total energy = 8079.5759 kcal/mol (8075.8091 without restraints) Performing minimization step: 1551. Total energy = 8079.2564 kcal/mol (8075.4869 without restraints) Performing minimization step: 1552. Total energy = 8078.9491 kcal/mol (8075.1827 without restraints) Performing minimization step: 1553. Total energy = 8078.6300 kcal/mol (8074.8609 without restraints) Performing minimization step: 1554. Total energy = 8078.3230 kcal/mol (8074.5571 without restraints) Performing minimization step: 1555. Total energy = 8078.0043 kcal/mol (8074.2357 without restraints) Performing minimization step: 1556. Total energy = 8077.6977 kcal/mol (8073.9322 without restraints) Performing minimization step: 1557. Total energy = 8077.3793 kcal/mol (8073.6112 without restraints) Performing minimization step: 1558. Total energy = 8077.0727 kcal/mol (8073.3081 without restraints) Performing minimization step: 1559. Total energy = 8076.7551 kcal/mol (8072.9874 without restraints) Performing minimization step: 1560. Total energy = 8076.4488 kcal/mol (8072.6847 without restraints) Performing minimization step: 1561. Total energy = 8076.1316 kcal/mol (8072.3644 without restraints) Performing minimization step: 1562. Total energy = 8075.8257 kcal/mol (8072.0620 without restraints) Performing minimization step: 1563. Total energy = 8075.5089 kcal/mol (8071.7421 without restraints) Performing minimization step: 1564. Total energy = 8075.2034 kcal/mol (8071.4401 without restraints) Performing minimization step: 1565. Total energy = 8074.8869 kcal/mol (8071.1206 without restraints) Performing minimization step: 1566. Total energy = 8074.5817 kcal/mol (8070.8190 without restraints) Performing minimization step: 1567. Total energy = 8074.2657 kcal/mol (8070.4998 without restraints) Performing minimization step: 1568. Total energy = 8073.9609 kcal/mol (8070.1986 without restraints) Performing minimization step: 1569. Total energy = 8073.6452 kcal/mol (8069.8798 without restraints) Performing minimization step: 1570. Total energy = 8073.3407 kcal/mol (8069.5789 without restraints) Performing minimization step: 1571. Total energy = 8073.0255 kcal/mol (8069.2605 without restraints) Performing minimization step: 1572. Total energy = 8072.7214 kcal/mol (8068.9599 without restraints) Performing minimization step: 1573. Total energy = 8072.4065 kcal/mol (8068.6419 without restraints) Performing minimization step: 1574. Total energy = 8072.1027 kcal/mol (8068.3417 without restraints) Performing minimization step: 1575. Total energy = 8071.7882 kcal/mol (8068.0241 without restraints) Performing minimization step: 1576. Total energy = 8071.4848 kcal/mol (8067.7243 without restraints) Performing minimization step: 1577. Total energy = 8071.1706 kcal/mol (8067.4070 without restraints) Performing minimization step: 1578. Total energy = 8070.8675 kcal/mol (8067.1075 without restraints) Performing minimization step: 1579. Total energy = 8070.5538 kcal/mol (8066.7906 without restraints) Performing minimization step: 1580. Total energy = 8070.2511 kcal/mol (8066.4915 without restraints) Performing minimization step: 1581. Total energy = 8069.9377 kcal/mol (8066.1749 without restraints) Performing minimization step: 1582. Total energy = 8069.6353 kcal/mol (8065.8762 without restraints) Performing minimization step: 1583. Total energy = 8069.3223 kcal/mol (8065.5600 without restraints) Performing minimization step: 1584. Total energy = 8069.0202 kcal/mol (8065.2616 without restraints) Performing minimization step: 1585. Total energy = 8068.7076 kcal/mol (8064.9457 without restraints) Performing minimization step: 1586. Total energy = 8068.4059 kcal/mol (8064.6477 without restraints) Performing minimization step: 1587. Total energy = 8068.0936 kcal/mol (8064.3322 without restraints) Performing minimization step: 1588. Total energy = 8067.7923 kcal/mol (8064.0345 without restraints) Performing minimization step: 1589. Total energy = 8067.4804 kcal/mol (8063.7194 without restraints) Performing minimization step: 1590. Total energy = 8067.1794 kcal/mol (8063.4221 without restraints) Performing minimization step: 1591. Total energy = 8066.8679 kcal/mol (8063.1073 without restraints) Performing minimization step: 1592. Total energy = 8066.5672 kcal/mol (8062.8104 without restraints) Performing minimization step: 1593. Total energy = 8066.2560 kcal/mol (8062.4959 without restraints) Performing minimization step: 1594. Total energy = 8065.9557 kcal/mol (8062.1993 without restraints) Performing minimization step: 1595. Total energy = 8065.6449 kcal/mol (8061.8852 without restraints) Performing minimization step: 1596. Total energy = 8065.3449 kcal/mol (8061.5890 without restraints) Performing minimization step: 1597. Total energy = 8065.0345 kcal/mol (8061.2752 without restraints) Performing minimization step: 1598. Total energy = 8064.7349 kcal/mol (8060.9794 without restraints) Performing minimization step: 1599. Total energy = 8064.4248 kcal/mol (8060.6660 without restraints) Performing minimization step: 1600. Total energy = 8064.1255 kcal/mol (8060.3704 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 8063.8158 kcal/mol (8060.0574 without restraints) Performing minimization step: 1602. Total energy = 8063.5168 kcal/mol (8059.7622 without restraints) Performing minimization step: 1603. Total energy = 8063.2075 kcal/mol (8059.4495 without restraints) Performing minimization step: 1604. Total energy = 8062.9090 kcal/mol (8059.1549 without restraints) Performing minimization step: 1605. Total energy = 8062.5996 kcal/mol (8058.8425 without restraints) Performing minimization step: 1606. Total energy = 8062.3018 kcal/mol (8058.5480 without restraints) Performing minimization step: 1607. Total energy = 8061.9927 kcal/mol (8058.2360 without restraints) Performing minimization step: 1608. Total energy = 8061.6952 kcal/mol (8057.9419 without restraints) Performing minimization step: 1609. Total energy = 8061.3864 kcal/mol (8057.6302 without restraints) Performing minimization step: 1610. Total energy = 8061.0893 kcal/mol (8057.3364 without restraints) Performing minimization step: 1611. Total energy = 8060.7809 kcal/mol (8057.0250 without restraints) Performing minimization step: 1612. Total energy = 8060.4840 kcal/mol (8056.7316 without restraints) Performing minimization step: 1613. Total energy = 8060.1760 kcal/mol (8056.4206 without restraints) Performing minimization step: 1614. Total energy = 8059.8795 kcal/mol (8056.1275 without restraints) Performing minimization step: 1615. Total energy = 8059.5718 kcal/mol (8055.8168 without restraints) Performing minimization step: 1616. Total energy = 8059.2756 kcal/mol (8055.5241 without restraints) Performing minimization step: 1617. Total energy = 8058.9683 kcal/mol (8055.2138 without restraints) Performing minimization step: 1618. Total energy = 8058.6724 kcal/mol (8054.9214 without restraints) Performing minimization step: 1619. Total energy = 8058.3654 kcal/mol (8054.6114 without restraints) Performing minimization step: 1620. Total energy = 8058.0699 kcal/mol (8054.3193 without restraints) Performing minimization step: 1621. Total energy = 8057.7633 kcal/mol (8054.0096 without restraints) Performing minimization step: 1622. Total energy = 8057.4681 kcal/mol (8053.7179 without restraints) Performing minimization step: 1623. Total energy = 8057.1618 kcal/mol (8053.4086 without restraints) Performing minimization step: 1624. Total energy = 8056.8670 kcal/mol (8053.1172 without restraints) Performing minimization step: 1625. Total energy = 8056.5610 kcal/mol (8052.8082 without restraints) Performing minimization step: 1626. Total energy = 8056.2665 kcal/mol (8052.5172 without restraints) Performing minimization step: 1627. Total energy = 8055.9608 kcal/mol (8052.2085 without restraints) Performing minimization step: 1628. Total energy = 8055.6667 kcal/mol (8051.9178 without restraints) Performing minimization step: 1629. Total energy = 8055.3613 kcal/mol (8051.6095 without restraints) Performing minimization step: 1630. Total energy = 8055.0675 kcal/mol (8051.3191 without restraints) Performing minimization step: 1631. Total energy = 8054.7625 kcal/mol (8051.0111 without restraints) Performing minimization step: 1632. Total energy = 8054.4690 kcal/mol (8050.7210 without restraints) Performing minimization step: 1633. Total energy = 8054.1644 kcal/mol (8050.4134 without restraints) Performing minimization step: 1634. Total energy = 8053.8714 kcal/mol (8050.1238 without restraints) Performing minimization step: 1635. Total energy = 8053.5671 kcal/mol (8049.8165 without restraints) Performing minimization step: 1636. Total energy = 8053.2743 kcal/mol (8049.5271 without restraints) Performing minimization step: 1637. Total energy = 8052.9702 kcal/mol (8049.2201 without restraints) Performing minimization step: 1638. Total energy = 8052.6778 kcal/mol (8048.9310 without restraints) Performing minimization step: 1639. Total energy = 8052.3741 kcal/mol (8048.6244 without restraints) Performing minimization step: 1640. Total energy = 8052.0819 kcal/mol (8048.3356 without restraints) Performing minimization step: 1641. Total energy = 8051.7786 kcal/mol (8048.0293 without restraints) Performing minimization step: 1642. Total energy = 8051.4867 kcal/mol (8047.7408 without restraints) Performing minimization step: 1643. Total energy = 8051.1837 kcal/mol (8047.4348 without restraints) Performing minimization step: 1644. Total energy = 8050.8922 kcal/mol (8047.1467 without restraints) Performing minimization step: 1645. Total energy = 8050.5895 kcal/mol (8046.8411 without restraints) Performing minimization step: 1646. Total energy = 8050.2983 kcal/mol (8046.5533 without restraints) Performing minimization step: 1647. Total energy = 8049.9959 kcal/mol (8046.2479 without restraints) Performing minimization step: 1648. Total energy = 8049.7051 kcal/mol (8045.9605 without restraints) Performing minimization step: 1649. Total energy = 8049.4030 kcal/mol (8045.6554 without restraints) Performing minimization step: 1650. Total energy = 8049.1125 kcal/mol (8045.3683 without restraints) Performing minimization step: 1651. Total energy = 8048.8107 kcal/mol (8045.0636 without restraints) Performing minimization step: 1652. Total energy = 8048.5205 kcal/mol (8044.7768 without restraints) Performing minimization step: 1653. Total energy = 8048.2191 kcal/mol (8044.4724 without restraints) Performing minimization step: 1654. Total energy = 8047.9292 kcal/mol (8044.1859 without restraints) Performing minimization step: 1655. Total energy = 8047.6281 kcal/mol (8043.8818 without restraints) Performing minimization step: 1656. Total energy = 8047.3385 kcal/mol (8043.5956 without restraints) Performing minimization step: 1657. Total energy = 8047.0378 kcal/mol (8043.2919 without restraints) Performing minimization step: 1658. Total energy = 8046.7485 kcal/mol (8043.0060 without restraints) Performing minimization step: 1659. Total energy = 8046.4481 kcal/mol (8042.7026 without restraints) Performing minimization step: 1660. Total energy = 8046.1591 kcal/mol (8042.4171 without restraints) Performing minimization step: 1661. Total energy = 8045.8590 kcal/mol (8042.1139 without restraints) Performing minimization step: 1662. Total energy = 8045.5704 kcal/mol (8041.8287 without restraints) Performing minimization step: 1663. Total energy = 8045.2705 kcal/mol (8041.5259 without restraints) Performing minimization step: 1664. Total energy = 8044.9823 kcal/mol (8041.2412 without restraints) Performing minimization step: 1665. Total energy = 8044.6827 kcal/mol (8040.9385 without restraints) Performing minimization step: 1666. Total energy = 8044.3948 kcal/mol (8040.6542 without restraints) Performing minimization step: 1667. Total energy = 8044.0955 kcal/mol (8040.3517 without restraints) Performing minimization step: 1668. Total energy = 8043.8079 kcal/mol (8040.0677 without restraints) Performing minimization step: 1669. Total energy = 8043.5089 kcal/mol (8039.7655 without restraints) Performing minimization step: 1670. Total energy = 8043.2216 kcal/mol (8039.4819 without restraints) Performing minimization step: 1671. Total energy = 8042.9229 kcal/mol (8039.1800 without restraints) Performing minimization step: 1672. Total energy = 8042.6360 kcal/mol (8038.8967 without restraints) Performing minimization step: 1673. Total energy = 8042.3376 kcal/mol (8038.5951 without restraints) Performing minimization step: 1674. Total energy = 8042.0510 kcal/mol (8038.3121 without restraints) Performing minimization step: 1675. Total energy = 8041.7529 kcal/mol (8038.0108 without restraints) Performing minimization step: 1676. Total energy = 8041.4666 kcal/mol (8037.7281 without restraints) Performing minimization step: 1677. Total energy = 8041.1688 kcal/mol (8037.4271 without restraints) Performing minimization step: 1678. Total energy = 8040.8828 kcal/mol (8037.1447 without restraints) Performing minimization step: 1679. Total energy = 8040.5853 kcal/mol (8036.8440 without restraints) Performing minimization step: 1680. Total energy = 8040.2996 kcal/mol (8036.5619 without restraints) Performing minimization step: 1681. Total energy = 8040.0025 kcal/mol (8036.2616 without restraints) Performing minimization step: 1682. Total energy = 8039.7171 kcal/mol (8035.9798 without restraints) Performing minimization step: 1683. Total energy = 8039.4202 kcal/mol (8035.6797 without restraints) Performing minimization step: 1684. Total energy = 8039.1351 kcal/mol (8035.3983 without restraints) Performing minimization step: 1685. Total energy = 8038.8386 kcal/mol (8035.0985 without restraints) Performing minimization step: 1686. Total energy = 8038.5538 kcal/mol (8034.8173 without restraints) Performing minimization step: 1687. Total energy = 8038.2576 kcal/mol (8034.5179 without restraints) Performing minimization step: 1688. Total energy = 8037.9730 kcal/mol (8034.2370 without restraints) Performing minimization step: 1689. Total energy = 8037.6771 kcal/mol (8033.9379 without restraints) Performing minimization step: 1690. Total energy = 8037.3929 kcal/mol (8033.6573 without restraints) Performing minimization step: 1691. Total energy = 8037.0973 kcal/mol (8033.3585 without restraints) Performing minimization step: 1692. Total energy = 8036.8134 kcal/mol (8033.0782 without restraints) Performing minimization step: 1693. Total energy = 8036.5181 kcal/mol (8032.7797 without restraints) Performing minimization step: 1694. Total energy = 8036.2345 kcal/mol (8032.4997 without restraints) Performing minimization step: 1695. Total energy = 8035.9395 kcal/mol (8032.2015 without restraints) Performing minimization step: 1696. Total energy = 8035.6562 kcal/mol (8031.9218 without restraints) Performing minimization step: 1697. Total energy = 8035.3615 kcal/mol (8031.6239 without restraints) Performing minimization step: 1698. Total energy = 8035.0785 kcal/mol (8031.3445 without restraints) Performing minimization step: 1699. Total energy = 8034.7840 kcal/mol (8031.0467 without restraints) Performing minimization step: 1700. Total energy = 8034.5012 kcal/mol (8030.7676 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 8034.2071 kcal/mol (8030.4703 without restraints) Performing minimization step: 1702. Total energy = 8033.9246 kcal/mol (8030.1915 without restraints) Performing minimization step: 1703. Total energy = 8033.6309 kcal/mol (8029.8945 without restraints) Performing minimization step: 1704. Total energy = 8033.3487 kcal/mol (8029.6160 without restraints) Performing minimization step: 1705. Total energy = 8033.0553 kcal/mol (8029.3193 without restraints) Performing minimization step: 1706. Total energy = 8032.7734 kcal/mol (8029.0411 without restraints) Performing minimization step: 1707. Total energy = 8032.4803 kcal/mol (8028.7447 without restraints) Performing minimization step: 1708. Total energy = 8032.1987 kcal/mol (8028.4669 without restraints) Performing minimization step: 1709. Total energy = 8031.9059 kcal/mol (8028.1707 without restraints) Performing minimization step: 1710. Total energy = 8031.6246 kcal/mol (8027.8931 without restraints) Performing minimization step: 1711. Total energy = 8031.3320 kcal/mol (8027.5973 without restraints) Performing minimization step: 1712. Total energy = 8031.0511 kcal/mol (8027.3200 without restraints) Performing minimization step: 1713. Total energy = 8030.7588 kcal/mol (8027.0244 without restraints) Performing minimization step: 1714. Total energy = 8030.4781 kcal/mol (8026.7475 without restraints) Performing minimization step: 1715. Total energy = 8030.1861 kcal/mol (8026.4522 without restraints) Performing minimization step: 1716. Total energy = 8029.9057 kcal/mol (8026.1755 without restraints) Performing minimization step: 1717. Total energy = 8029.6139 kcal/mol (8025.8803 without restraints) Performing minimization step: 1718. Total energy = 8029.3338 kcal/mol (8025.6039 without restraints) Performing minimization step: 1719. Total energy = 8029.0424 kcal/mol (8025.3092 without restraints) Performing minimization step: 1720. Total energy = 8028.7625 kcal/mol (8025.0331 without restraints) Performing minimization step: 1721. Total energy = 8028.4715 kcal/mol (8024.7387 without restraints) Performing minimization step: 1722. Total energy = 8028.1919 kcal/mol (8024.4629 without restraints) Performing minimization step: 1723. Total energy = 8027.9012 kcal/mol (8024.1690 without restraints) Performing minimization step: 1724. Total energy = 8027.6218 kcal/mol (8023.8932 without restraints) Performing minimization step: 1725. Total energy = 8027.3314 kcal/mol (8023.5997 without restraints) Performing minimization step: 1726. Total energy = 8027.0523 kcal/mol (8023.3241 without restraints) Performing minimization step: 1727. Total energy = 8026.7622 kcal/mol (8023.0309 without restraints) Performing minimization step: 1728. Total energy = 8026.4834 kcal/mol (8022.7556 without restraints) Performing minimization step: 1729. Total energy = 8026.1936 kcal/mol (8022.4627 without restraints) Performing minimization step: 1730. Total energy = 8025.9151 kcal/mol (8022.1876 without restraints) Performing minimization step: 1731. Total energy = 8025.6255 kcal/mol (8021.8950 without restraints) Performing minimization step: 1732. Total energy = 8025.3473 kcal/mol (8021.6202 without restraints) Performing minimization step: 1733. Total energy = 8025.0581 kcal/mol (8021.3279 without restraints) Performing minimization step: 1734. Total energy = 8024.7801 kcal/mol (8021.0535 without restraints) Performing minimization step: 1735. Total energy = 8024.4912 kcal/mol (8020.7614 without restraints) Performing minimization step: 1736. Total energy = 8024.2135 kcal/mol (8020.4872 without restraints) Performing minimization step: 1737. Total energy = 8023.9248 kcal/mol (8020.1955 without restraints) Performing minimization step: 1738. Total energy = 8023.6474 kcal/mol (8019.9216 without restraints) Performing minimization step: 1739. Total energy = 8023.3590 kcal/mol (8019.6301 without restraints) Performing minimization step: 1740. Total energy = 8023.0819 kcal/mol (8019.3564 without restraints) Performing minimization step: 1741. Total energy = 8022.7938 kcal/mol (8019.0652 without restraints) Performing minimization step: 1742. Total energy = 8022.5169 kcal/mol (8018.7919 without restraints) Performing minimization step: 1743. Total energy = 8022.2292 kcal/mol (8018.5010 without restraints) Performing minimization step: 1744. Total energy = 8021.9526 kcal/mol (8018.2279 without restraints) Performing minimization step: 1745. Total energy = 8021.6651 kcal/mol (8017.9373 without restraints) Performing minimization step: 1746. Total energy = 8021.3055 kcal/mol (8017.4980 without restraints) Performing minimization step: 1747. Total energy = 8020.8729 kcal/mol (8017.0904 without restraints) Performing minimization step: 1748. Total energy = 8020.2878 kcal/mol (8016.5491 without restraints) Performing minimization step: 1749. Total energy = 8020.0316 kcal/mol (8016.2541 without restraints) Performing minimization step: 1750. Total energy = 8019.7946 kcal/mol (8016.0230 without restraints) Performing minimization step: 1751. Total energy = 8019.5342 kcal/mol (8015.7631 without restraints) Performing minimization step: 1752. Total energy = 8019.2953 kcal/mol (8015.5288 without restraints) Performing minimization step: 1753. Total energy = 8019.0468 kcal/mol (8015.2804 without restraints) Performing minimization step: 1754. Total energy = 8018.7764 kcal/mol (8014.9784 without restraints) Performing minimization step: 1755. Total energy = 8018.5725 kcal/mol (8014.7983 without restraints) Performing minimization step: 1756. Total energy = 8018.2628 kcal/mol (8014.4660 without restraints) Performing minimization step: 1757. Total energy = 8018.0462 kcal/mol (8014.2479 without restraints) Performing minimization step: 1758. Total energy = 8017.8175 kcal/mol (8014.0298 without restraints) Performing minimization step: 1759. Total energy = 8017.5980 kcal/mol (8013.8111 without restraints) Performing minimization step: 1760. Total energy = 8017.3882 kcal/mol (8013.6046 without restraints) Performing minimization step: 1761. Total energy = 8017.1753 kcal/mol (8013.3925 without restraints) Performing minimization step: 1762. Total energy = 8016.9716 kcal/mol (8013.1939 without restraints) Performing minimization step: 1763. Total energy = 8016.7654 kcal/mol (8012.9882 without restraints) Performing minimization step: 1764. Total energy = 8016.5693 kcal/mol (8012.7959 without restraints) Performing minimization step: 1765. Total energy = 8016.3691 kcal/mol (8012.5960 without restraints) Performing minimization step: 1766. Total energy = 8016.1787 kcal/mol (8012.4092 without restraints) Performing minimization step: 1767. Total energy = 8015.9837 kcal/mol (8012.2144 without restraints) Performing minimization step: 1768. Total energy = 8015.7979 kcal/mol (8012.0324 without restraints) Performing minimization step: 1769. Total energy = 8015.6078 kcal/mol (8011.8419 without restraints) Performing minimization step: 1770. Total energy = 8015.4262 kcal/mol (8011.6641 without restraints) Performing minimization step: 1771. Total energy = 8015.2399 kcal/mol (8011.4775 without restraints) Performing minimization step: 1772. Total energy = 8015.0623 kcal/mol (8011.3033 without restraints) Performing minimization step: 1773. Total energy = 8014.8796 kcal/mol (8011.1201 without restraints) Performing minimization step: 1774. Total energy = 8014.7052 kcal/mol (8010.9489 without restraints) Performing minimization step: 1775. Total energy = 8014.5258 kcal/mol (8010.7690 without restraints) Performing minimization step: 1776. Total energy = 8014.3542 kcal/mol (8010.6006 without restraints) Performing minimization step: 1777. Total energy = 8014.1775 kcal/mol (8010.4231 without restraints) Performing minimization step: 1778. Total energy = 8014.0051 kcal/mol (8010.2503 without restraints) Performing minimization step: 1779. Total energy = 8013.8338 kcal/mol (8010.0794 without restraints) Performing minimization step: 1780. Total energy = 8013.6598 kcal/mol (8009.9022 without restraints) Performing minimization step: 1781. Total energy = 8013.4802 kcal/mol (8009.7105 without restraints) Performing minimization step: 1782. Total energy = 8013.2967 kcal/mol (8009.5046 without restraints) Performing minimization step: 1783. Total energy = 8013.1392 kcal/mol (8009.3482 without restraints) Performing minimization step: 1784. Total energy = 8012.9725 kcal/mol (8009.1860 without restraints) Performing minimization step: 1785. Total energy = 8012.8116 kcal/mol (8009.0257 without restraints) Performing minimization step: 1786. Total energy = 8012.6560 kcal/mol (8008.8731 without restraints) Performing minimization step: 1787. Total energy = 8012.4989 kcal/mol (8008.7165 without restraints) Performing minimization step: 1788. Total energy = 8012.3491 kcal/mol (8008.5695 without restraints) Performing minimization step: 1789. Total energy = 8012.1964 kcal/mol (8008.4171 without restraints) Performing minimization step: 1790. Total energy = 8012.0290 kcal/mol (8008.2302 without restraints) Performing minimization step: 1791. Total energy = 8011.9031 kcal/mol (8008.1190 without restraints) Performing minimization step: 1792. Total energy = 8011.7116 kcal/mol (8007.9135 without restraints) Performing minimization step: 1793. Total energy = 8011.5775 kcal/mol (8007.7783 without restraints) Performing minimization step: 1794. Total energy = 8011.4354 kcal/mol (8007.6426 without restraints) Performing minimization step: 1795. Total energy = 8011.2989 kcal/mol (8007.5064 without restraints) Performing minimization step: 1796. Total energy = 8011.1681 kcal/mol (8007.3777 without restraints) Performing minimization step: 1797. Total energy = 8011.0355 kcal/mol (8007.2457 without restraints) Performing minimization step: 1798. Total energy = 8010.9088 kcal/mol (8007.1218 without restraints) Performing minimization step: 1799. Total energy = 8010.7804 kcal/mol (8006.9938 without restraints) Performing minimization step: 1800. Total energy = 8010.6582 kcal/mol (8006.8740 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8010.5337 kcal/mol (8006.7498 without restraints) Performing minimization step: 1802. Total energy = 8010.4153 kcal/mol (8006.6337 without restraints) Performing minimization step: 1803. Total energy = 8010.2942 kcal/mol (8006.5128 without restraints) Performing minimization step: 1804. Total energy = 8010.1792 kcal/mol (8006.4000 without restraints) Performing minimization step: 1805. Total energy = 8010.0613 kcal/mol (8006.2823 without restraints) Performing minimization step: 1806. Total energy = 8009.9490 kcal/mol (8006.1724 without restraints) Performing minimization step: 1807. Total energy = 8009.8341 kcal/mol (8006.0574 without restraints) Performing minimization step: 1808. Total energy = 8009.7246 kcal/mol (8005.9503 without restraints) Performing minimization step: 1809. Total energy = 8009.6123 kcal/mol (8005.8378 without restraints) Performing minimization step: 1810. Total energy = 8009.5054 kcal/mol (8005.7334 without restraints) Performing minimization step: 1811. Total energy = 8009.3954 kcal/mol (8005.6231 without restraints) Performing minimization step: 1812. Total energy = 8009.2899 kcal/mol (8005.5190 without restraints) Performing minimization step: 1813. Total energy = 8009.1506 kcal/mol (8005.3476 without restraints) Performing minimization step: 1814. Total energy = 8009.0062 kcal/mol (8005.2173 without restraints) Performing minimization step: 1815. Total energy = 8008.7610 kcal/mol (8004.9790 without restraints) Performing minimization step: 1816. Total energy = 8008.6705 kcal/mol (8004.8801 without restraints) Performing minimization step: 1817. Total energy = 8008.5735 kcal/mol (8004.7835 without restraints) Performing minimization step: 1818. Total energy = 8008.4790 kcal/mol (8004.6907 without restraints) Performing minimization step: 1819. Total energy = 8008.3837 kcal/mol (8004.5956 without restraints) Performing minimization step: 1820. Total energy = 8008.2926 kcal/mol (8004.5062 without restraints) Performing minimization step: 1821. Total energy = 8008.1996 kcal/mol (8004.4133 without restraints) Performing minimization step: 1822. Total energy = 8008.0965 kcal/mol (8004.2976 without restraints) Performing minimization step: 1823. Total energy = 8008.0105 kcal/mol (8004.2105 without restraints) Performing minimization step: 1824. Total energy = 8007.9212 kcal/mol (8004.1241 without restraints) Performing minimization step: 1825. Total energy = 8007.8338 kcal/mol (8004.0369 without restraints) Performing minimization step: 1826. Total energy = 8007.7501 kcal/mol (8003.9544 without restraints) Performing minimization step: 1827. Total energy = 8007.6651 kcal/mol (8003.8697 without restraints) Performing minimization step: 1828. Total energy = 8007.5843 kcal/mol (8003.7900 without restraints) Performing minimization step: 1829. Total energy = 8007.5019 kcal/mol (8003.7078 without restraints) Performing minimization step: 1830. Total energy = 8007.4231 kcal/mol (8003.6307 without restraints) Performing minimization step: 1831. Total energy = 8007.3431 kcal/mol (8003.5509 without restraints) Performing minimization step: 1832. Total energy = 8007.2669 kcal/mol (8003.4761 without restraints) Performing minimization step: 1833. Total energy = 8007.1891 kcal/mol (8003.3985 without restraints) Performing minimization step: 1834. Total energy = 8007.1151 kcal/mol (8003.3258 without restraints) Performing minimization step: 1835. Total energy = 8007.0394 kcal/mol (8003.2502 without restraints) Performing minimization step: 1836. Total energy = 8006.9673 kcal/mol (8003.1796 without restraints) Performing minimization step: 1837. Total energy = 8006.8936 kcal/mol (8003.1058 without restraints) Performing minimization step: 1838. Total energy = 8006.8233 kcal/mol (8003.0370 without restraints) Performing minimization step: 1839. Total energy = 8006.7513 kcal/mol (8002.9651 without restraints) Performing minimization step: 1840. Total energy = 8006.6830 kcal/mol (8002.8982 without restraints) Performing minimization step: 1841. Total energy = 8006.6127 kcal/mol (8002.8278 without restraints) Performing minimization step: 1842. Total energy = 8006.5456 kcal/mol (8002.7621 without restraints) Performing minimization step: 1843. Total energy = 8006.4770 kcal/mol (8002.6935 without restraints) Performing minimization step: 1844. Total energy = 8006.4114 kcal/mol (8002.6291 without restraints) Performing minimization step: 1845. Total energy = 8006.3441 kcal/mol (8002.5618 without restraints) Performing minimization step: 1846. Total energy = 8006.2786 kcal/mol (8002.4963 without restraints) Performing minimization step: 1847. Total energy = 8006.2116 kcal/mol (8002.4275 without restraints) Performing minimization step: 1848. Total energy = 8006.1444 kcal/mol (8002.3567 without restraints) Performing minimization step: 1849. Total energy = 8006.0832 kcal/mol (8002.2967 without restraints) Performing minimization step: 1850. Total energy = 8006.0194 kcal/mol (8002.2335 without restraints) Performing minimization step: 1851. Total energy = 8005.9573 kcal/mol (8002.1717 without restraints) Performing minimization step: 1852. Total energy = 8005.8849 kcal/mol (8002.0886 without restraints) Performing minimization step: 1853. Total energy = 8005.8288 kcal/mol (8002.0335 without restraints) Performing minimization step: 1854. Total energy = 8005.7658 kcal/mol (8001.9720 without restraints) Performing minimization step: 1855. Total energy = 8005.7066 kcal/mol (8001.9130 without restraints) Performing minimization step: 1856. Total energy = 8005.6483 kcal/mol (8001.8557 without restraints) Performing minimization step: 1857. Total energy = 8005.5897 kcal/mol (8001.7971 without restraints) Performing minimization step: 1858. Total energy = 8005.5334 kcal/mol (8001.7418 without restraints) Performing minimization step: 1859. Total energy = 8005.4760 kcal/mol (8001.6844 without restraints) Performing minimization step: 1860. Total energy = 8005.4123 kcal/mol (8001.6129 without restraints) Performing minimization step: 1861. Total energy = 8005.3590 kcal/mol (8001.5590 without restraints) Performing minimization step: 1862. Total energy = 8005.3035 kcal/mol (8001.5051 without restraints) Performing minimization step: 1863. Total energy = 8005.2490 kcal/mol (8001.4507 without restraints) Performing minimization step: 1864. Total energy = 8005.1967 kcal/mol (8001.3991 without restraints) Performing minimization step: 1865. Total energy = 8005.1435 kcal/mol (8001.3460 without restraints) Performing minimization step: 1866. Total energy = 8005.0928 kcal/mol (8001.2959 without restraints) Performing minimization step: 1867. Total energy = 8005.0410 kcal/mol (8001.2442 without restraints) Performing minimization step: 1868. Total energy = 8004.9916 kcal/mol (8001.1955 without restraints) Performing minimization step: 1869. Total energy = 8004.9411 kcal/mol (8001.1451 without restraints) Performing minimization step: 1870. Total energy = 8004.8927 kcal/mol (8001.0976 without restraints) Performing minimization step: 1871. Total energy = 8004.8435 kcal/mol (8001.0484 without restraints) Performing minimization step: 1872. Total energy = 8004.7965 kcal/mol (8001.0022 without restraints) Performing minimization step: 1873. Total energy = 8004.7484 kcal/mol (8000.9542 without restraints) Performing minimization step: 1874. Total energy = 8004.7026 kcal/mol (8000.9092 without restraints) Performing minimization step: 1875. Total energy = 8004.6557 kcal/mol (8000.8623 without restraints) Performing minimization step: 1876. Total energy = 8004.6110 kcal/mol (8000.8184 without restraints) Performing minimization step: 1877. Total energy = 8004.5651 kcal/mol (8000.7725 without restraints) Performing minimization step: 1878. Total energy = 8004.5214 kcal/mol (8000.7296 without restraints) Performing minimization step: 1879. Total energy = 8004.4766 kcal/mol (8000.6848 without restraints) Performing minimization step: 1880. Total energy = 8004.4338 kcal/mol (8000.6428 without restraints) Performing minimization step: 1881. Total energy = 8004.3899 kcal/mol (8000.5989 without restraints) Performing minimization step: 1882. Total energy = 8004.3480 kcal/mol (8000.5578 without restraints) Performing minimization step: 1883. Total energy = 8004.3050 kcal/mol (8000.5148 without restraints) Performing minimization step: 1884. Total energy = 8004.2642 kcal/mol (8000.4749 without restraints) Performing minimization step: 1885. Total energy = 8004.2220 kcal/mol (8000.4326 without restraints) Performing minimization step: 1886. Total energy = 8004.1815 kcal/mol (8000.3927 without restraints) Performing minimization step: 1887. Total energy = 8004.1408 kcal/mol (8000.3522 without restraints) Performing minimization step: 1888. Total energy = 8004.1001 kcal/mol (8000.3113 without restraints) Performing minimization step: 1889. Total energy = 8004.0591 kcal/mol (8000.2693 without restraints) Performing minimization step: 1890. Total energy = 8004.0176 kcal/mol (8000.2254 without restraints) Performing minimization step: 1891. Total energy = 8003.9800 kcal/mol (8000.1886 without restraints) Performing minimization step: 1892. Total energy = 8003.9406 kcal/mol (8000.1495 without restraints) Performing minimization step: 1893. Total energy = 8003.9023 kcal/mol (8000.1114 without restraints) Performing minimization step: 1894. Total energy = 8003.8575 kcal/mol (8000.0599 without restraints) Performing minimization step: 1895. Total energy = 8003.8228 kcal/mol (8000.0259 without restraints) Performing minimization step: 1896. Total energy = 8003.7837 kcal/mol (7999.9876 without restraints) Performing minimization step: 1897. Total energy = 8003.7470 kcal/mol (7999.9510 without restraints) Performing minimization step: 1898. Total energy = 8003.7107 kcal/mol (7999.9152 without restraints) Performing minimization step: 1899. Total energy = 8003.6742 kcal/mol (7999.8787 without restraints) Performing minimization step: 1900. Total energy = 8003.6390 kcal/mol (7999.8441 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 8003.6031 kcal/mol (7999.8082 without restraints) Performing minimization step: 1902. Total energy = 8003.5688 kcal/mol (7999.7744 without restraints) Performing minimization step: 1903. Total energy = 8003.5336 kcal/mol (7999.7392 without restraints) Performing minimization step: 1904. Total energy = 8003.4943 kcal/mol (7999.6948 without restraints) Performing minimization step: 1905. Total energy = 8003.4616 kcal/mol (7999.6618 without restraints) Performing minimization step: 1906. Total energy = 8003.4274 kcal/mol (7999.6286 without restraints) Performing minimization step: 1907. Total energy = 8003.3938 kcal/mol (7999.5949 without restraints) Performing minimization step: 1908. Total energy = 8003.3614 kcal/mol (7999.5629 without restraints) Performing minimization step: 1909. Total energy = 8003.3284 kcal/mol (7999.5299 without restraints) Performing minimization step: 1910. Total energy = 8003.2968 kcal/mol (7999.4987 without restraints) Performing minimization step: 1911. Total energy = 8003.2645 kcal/mol (7999.4664 without restraints) Performing minimization step: 1912. Total energy = 8003.2336 kcal/mol (7999.4359 without restraints) Performing minimization step: 1913. Total energy = 8003.2020 kcal/mol (7999.4044 without restraints) Performing minimization step: 1914. Total energy = 8003.1719 kcal/mol (7999.3746 without restraints) Performing minimization step: 1915. Total energy = 8003.1409 kcal/mol (7999.3436 without restraints) Performing minimization step: 1916. Total energy = 8003.1112 kcal/mol (7999.3145 without restraints) Performing minimization step: 1917. Total energy = 8003.0809 kcal/mol (7999.2842 without restraints) Performing minimization step: 1918. Total energy = 8003.0520 kcal/mol (7999.2557 without restraints) Performing minimization step: 1919. Total energy = 8003.0223 kcal/mol (7999.2260 without restraints) Performing minimization step: 1920. Total energy = 8002.9939 kcal/mol (7999.1981 without restraints) Performing minimization step: 1921. Total energy = 8002.9648 kcal/mol (7999.1690 without restraints) Performing minimization step: 1922. Total energy = 8002.9370 kcal/mol (7999.1417 without restraints) Performing minimization step: 1923. Total energy = 8002.9085 kcal/mol (7999.1131 without restraints) Performing minimization step: 1924. Total energy = 8002.8813 kcal/mol (7999.0864 without restraints) Performing minimization step: 1925. Total energy = 8002.8533 kcal/mol (7999.0583 without restraints) Performing minimization step: 1926. Total energy = 8002.8266 kcal/mol (7999.0321 without restraints) Performing minimization step: 1927. Total energy = 8002.7991 kcal/mol (7999.0046 without restraints) Performing minimization step: 1928. Total energy = 8002.7729 kcal/mol (7998.9788 without restraints) Performing minimization step: 1929. Total energy = 8002.7459 kcal/mol (7998.9518 without restraints) Performing minimization step: 1930. Total energy = 8002.7201 kcal/mol (7998.9263 without restraints) Performing minimization step: 1931. Total energy = 8002.6937 kcal/mol (7998.9000 without restraints) Performing minimization step: 1932. Total energy = 8002.6682 kcal/mol (7998.8749 without restraints) Performing minimization step: 1933. Total energy = 8002.6423 kcal/mol (7998.8490 without restraints) Performing minimization step: 1934. Total energy = 8002.6172 kcal/mol (7998.8241 without restraints) Performing minimization step: 1935. Total energy = 8002.5843 kcal/mol (7998.7837 without restraints) Performing minimization step: 1936. Total energy = 8002.5495 kcal/mol (7998.7519 without restraints) Performing minimization step: 1937. Total energy = 8002.4912 kcal/mol (7998.6951 without restraints) Performing minimization step: 1938. Total energy = 8002.4691 kcal/mol (7998.6709 without restraints) Performing minimization step: 1939. Total energy = 8002.4451 kcal/mol (7998.6469 without restraints) Performing minimization step: 1940. Total energy = 8002.4217 kcal/mol (7998.6239 without restraints) Performing minimization step: 1941. Total energy = 8002.3980 kcal/mol (7998.6001 without restraints) Performing minimization step: 1942. Total energy = 8002.3752 kcal/mol (7998.5776 without restraints) Performing minimization step: 1943. Total energy = 8002.3518 kcal/mol (7998.5543 without restraints) Performing minimization step: 1944. Total energy = 8002.3295 kcal/mol (7998.5322 without restraints) Performing minimization step: 1945. Total energy = 8002.3065 kcal/mol (7998.5093 without restraints) Performing minimization step: 1946. Total energy = 8002.2846 kcal/mol (7998.4877 without restraints) Performing minimization step: 1947. Total energy = 8002.2621 kcal/mol (7998.4651 without restraints) Performing minimization step: 1948. Total energy = 8002.2406 kcal/mol (7998.4439 without restraints) Performing minimization step: 1949. Total energy = 8002.2185 kcal/mol (7998.4218 without restraints) Performing minimization step: 1950. Total energy = 8002.1941 kcal/mol (7998.3944 without restraints) Performing minimization step: 1951. Total energy = 8002.1757 kcal/mol (7998.3781 without restraints) Performing minimization step: 1952. Total energy = 8002.1509 kcal/mol (7998.3546 without restraints) Performing minimization step: 1953. Total energy = 8002.1273 kcal/mol (7998.3279 without restraints) Performing minimization step: 1954. Total energy = 8002.1080 kcal/mol (7998.3086 without restraints) Performing minimization step: 1955. Total energy = 8002.0864 kcal/mol (7998.2872 without restraints) Performing minimization step: 1956. Total energy = 8002.0664 kcal/mol (7998.2675 without restraints) Performing minimization step: 1957. Total energy = 8002.0458 kcal/mol (7998.2468 without restraints) Performing minimization step: 1958. Total energy = 8002.0261 kcal/mol (7998.2273 without restraints) Performing minimization step: 1959. Total energy = 8002.0059 kcal/mol (7998.2071 without restraints) Performing minimization step: 1960. Total energy = 8001.9866 kcal/mol (7998.1880 without restraints) Performing minimization step: 1961. Total energy = 8001.9667 kcal/mol (7998.1681 without restraints) Performing minimization step: 1962. Total energy = 8001.9477 kcal/mol (7998.1493 without restraints) Performing minimization step: 1963. Total energy = 8001.9282 kcal/mol (7998.1298 without restraints) Performing minimization step: 1964. Total energy = 8001.9096 kcal/mol (7998.1114 without restraints) Performing minimization step: 1965. Total energy = 8001.8904 kcal/mol (7998.0922 without restraints) Performing minimization step: 1966. Total energy = 8001.8720 kcal/mol (7998.0741 without restraints) Performing minimization step: 1967. Total energy = 8001.8532 kcal/mol (7998.0552 without restraints) Performing minimization step: 1968. Total energy = 8001.8351 kcal/mol (7998.0375 without restraints) Performing minimization step: 1969. Total energy = 8001.8166 kcal/mol (7998.0189 without restraints) Performing minimization step: 1970. Total energy = 8001.7989 kcal/mol (7998.0015 without restraints) Performing minimization step: 1971. Total energy = 8001.7807 kcal/mol (7997.9832 without restraints) Performing minimization step: 1972. Total energy = 8001.7633 kcal/mol (7997.9661 without restraints) Performing minimization step: 1973. Total energy = 8001.7454 kcal/mol (7997.9481 without restraints) Performing minimization step: 1974. Total energy = 8001.7283 kcal/mol (7997.9313 without restraints) Performing minimization step: 1975. Total energy = 8001.7106 kcal/mol (7997.9136 without restraints) Performing minimization step: 1976. Total energy = 8001.6938 kcal/mol (7997.8970 without restraints) Performing minimization step: 1977. Total energy = 8001.6765 kcal/mol (7997.8797 without restraints) Performing minimization step: 1978. Total energy = 8001.6599 kcal/mol (7997.8633 without restraints) Performing minimization step: 1979. Total energy = 8001.6428 kcal/mol (7997.8462 without restraints) Performing minimization step: 1980. Total energy = 8001.6265 kcal/mol (7997.8302 without restraints) Performing minimization step: 1981. Total energy = 8001.6097 kcal/mol (7997.8133 without restraints) Performing minimization step: 1982. Total energy = 8001.5936 kcal/mol (7997.7975 without restraints) Performing minimization step: 1983. Total energy = 8001.5771 kcal/mol (7997.7809 without restraints) Performing minimization step: 1984. Total energy = 8001.5614 kcal/mol (7997.7656 without restraints) Performing minimization step: 1985. Total energy = 8001.5449 kcal/mol (7997.7490 without restraints) Performing minimization step: 1986. Total energy = 8001.5295 kcal/mol (7997.7340 without restraints) Performing minimization step: 1987. Total energy = 8001.5134 kcal/mol (7997.7177 without restraints) Performing minimization step: 1988. Total energy = 8001.4932 kcal/mol (7997.6930 without restraints) Performing minimization step: 1989. Total energy = 8001.4683 kcal/mol (7997.6690 without restraints) Performing minimization step: 1990. Total energy = 8001.4355 kcal/mol (7997.6384 without restraints) Performing minimization step: 1991. Total energy = 8001.4205 kcal/mol (7997.6216 without restraints) Performing minimization step: 1992. Total energy = 8001.4062 kcal/mol (7997.6075 without restraints) Performing minimization step: 1993. Total energy = 8001.3908 kcal/mol (7997.5921 without restraints) Performing minimization step: 1994. Total energy = 8001.3764 kcal/mol (7997.5778 without restraints) Performing minimization step: 1995. Total energy = 8001.3615 kcal/mol (7997.5629 without restraints) Performing minimization step: 1996. Total energy = 8001.3472 kcal/mol (7997.5488 without restraints) Performing minimization step: 1997. Total energy = 8001.3325 kcal/mol (7997.5341 without restraints) Performing minimization step: 1998. Total energy = 8001.3184 kcal/mol (7997.5202 without restraints) Performing minimization step: 1999. Total energy = 8001.3040 kcal/mol (7997.5057 without restraints) Performing minimization step: 2000. Total energy = 8001.2902 kcal/mol (7997.4921 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 8001.2759 kcal/mol (7997.4778 without restraints) Performing minimization step: 2002. Total energy = 8001.2623 kcal/mol (7997.4644 without restraints) Performing minimization step: 2003. Total energy = 8001.2483 kcal/mol (7997.4503 without restraints) Performing minimization step: 2004. Total energy = 8001.2349 kcal/mol (7997.4371 without restraints) Performing minimization step: 2005. Total energy = 8001.2211 kcal/mol (7997.4233 without restraints) Performing minimization step: 2006. Total energy = 8001.2078 kcal/mol (7997.4102 without restraints) Performing minimization step: 2007. Total energy = 8001.1942 kcal/mol (7997.3965 without restraints) Performing minimization step: 2008. Total energy = 8001.1791 kcal/mol (7997.3795 without restraints) Performing minimization step: 2009. Total energy = 8001.1678 kcal/mol (7997.3696 without restraints) Performing minimization step: 2010. Total energy = 8001.1524 kcal/mol (7997.3550 without restraints) Performing minimization step: 2011. Total energy = 8001.1378 kcal/mol (7997.3383 without restraints) Performing minimization step: 2012. Total energy = 8001.1258 kcal/mol (7997.3263 without restraints) Performing minimization step: 2013. Total energy = 8001.1124 kcal/mol (7997.3131 without restraints) Performing minimization step: 2014. Total energy = 8001.1000 kcal/mol (7997.3008 without restraints) Performing minimization step: 2015. Total energy = 8001.0871 kcal/mol (7997.2879 without restraints) Performing minimization step: 2016. Total energy = 8001.0748 kcal/mol (7997.2757 without restraints) Performing minimization step: 2017. Total energy = 8001.0622 kcal/mol (7997.2630 without restraints) Performing minimization step: 2018. Total energy = 8001.0500 kcal/mol (7997.2510 without restraints) Performing minimization step: 2019. Total energy = 8001.0376 kcal/mol (7997.2386 without restraints) Performing minimization step: 2020. Total energy = 8001.0256 kcal/mol (7997.2267 without restraints) Performing minimization step: 2021. Total energy = 8001.0134 kcal/mol (7997.2144 without restraints) Performing minimization step: 2022. Total energy = 8001.0016 kcal/mol (7997.2028 without restraints) Performing minimization step: 2023. Total energy = 8000.9895 kcal/mol (7997.1907 without restraints) Performing minimization step: 2024. Total energy = 8000.9779 kcal/mol (7997.1792 without restraints) Performing minimization step: 2025. Total energy = 8000.9660 kcal/mol (7997.1673 without restraints) Performing minimization step: 2026. Total energy = 8000.9545 kcal/mol (7997.1560 without restraints) Performing minimization step: 2027. Total energy = 8000.9428 kcal/mol (7997.1442 without restraints) Performing minimization step: 2028. Total energy = 8000.9315 kcal/mol (7997.1331 without restraints) Performing minimization step: 2029. Total energy = 8000.9199 kcal/mol (7997.1215 without restraints) Performing minimization step: 2030. Total energy = 8000.9088 kcal/mol (7997.1105 without restraints) Performing minimization step: 2031. Total energy = 8000.8973 kcal/mol (7997.0990 without restraints) Performing minimization step: 2032. Total energy = 8000.8864 kcal/mol (7997.0882 without restraints) Performing minimization step: 2033. Total energy = 8000.8751 kcal/mol (7997.0769 without restraints) Performing minimization step: 2034. Total energy = 8000.8643 kcal/mol (7997.0662 without restraints) Performing minimization step: 2035. Total energy = 8000.8531 kcal/mol (7997.0551 without restraints) Performing minimization step: 2036. Total energy = 8000.8425 kcal/mol (7997.0446 without restraints) Performing minimization step: 2037. Total energy = 8000.8315 kcal/mol (7997.0336 without restraints) Performing minimization step: 2038. Total energy = 8000.8210 kcal/mol (7997.0232 without restraints) Performing minimization step: 2039. Total energy = 8000.8102 kcal/mol (7997.0123 without restraints) Performing minimization step: 2040. Total energy = 8000.7998 kcal/mol (7997.0021 without restraints) Performing minimization step: 2041. Total energy = 8000.7891 kcal/mol (7996.9914 without restraints) Performing minimization step: 2042. Total energy = 8000.7788 kcal/mol (7996.9813 without restraints) Performing minimization step: 2043. Total energy = 8000.7683 kcal/mol (7996.9707 without restraints) Performing minimization step: 2044. Total energy = 8000.7582 kcal/mol (7996.9608 without restraints) Performing minimization step: 2045. Total energy = 8000.7477 kcal/mol (7996.9503 without restraints) Performing minimization step: 2046. Total energy = 8000.7378 kcal/mol (7996.9405 without restraints) Performing minimization step: 2047. Total energy = 8000.7275 kcal/mol (7996.9301 without restraints) Performing minimization step: 2048. Total energy = 8000.7175 kcal/mol (7996.9202 without restraints) Performing minimization step: 2049. Total energy = 8000.7075 kcal/mol (7996.9103 without restraints) Performing minimization step: 2050. Total energy = 8000.6976 kcal/mol (7996.9004 without restraints) Performing minimization step: 2051. Total energy = 8000.6876 kcal/mol (7996.8904 without restraints) Performing minimization step: 2052. Total energy = 8000.6752 kcal/mol (7996.8753 without restraints) Performing minimization step: 2053. Total energy = 8000.6595 kcal/mol (7996.8601 without restraints) Performing minimization step: 2054. Total energy = 8000.6393 kcal/mol (7996.8412 without restraints) Performing minimization step: 2055. Total energy = 8000.6298 kcal/mol (7996.8306 without restraints) Performing minimization step: 2056. Total energy = 8000.6208 kcal/mol (7996.8216 without restraints) Performing minimization step: 2057. Total energy = 8000.6111 kcal/mol (7996.8119 without restraints) Performing minimization step: 2058. Total energy = 8000.6019 kcal/mol (7996.8029 without restraints) Performing minimization step: 2059. Total energy = 8000.5925 kcal/mol (7996.7934 without restraints) Performing minimization step: 2060. Total energy = 8000.5834 kcal/mol (7996.7844 without restraints) Performing minimization step: 2061. Total energy = 8000.5741 kcal/mol (7996.7751 without restraints) Performing minimization step: 2062. Total energy = 8000.5651 kcal/mol (7996.7662 without restraints) Performing minimization step: 2063. Total energy = 8000.5559 kcal/mol (7996.7570 without restraints) Performing minimization step: 2064. Total energy = 8000.5470 kcal/mol (7996.7482 without restraints) Performing minimization step: 2065. Total energy = 8000.5380 kcal/mol (7996.7391 without restraints) Performing minimization step: 2066. Total energy = 8000.5292 kcal/mol (7996.7305 without restraints) Performing minimization step: 2067. Total energy = 8000.5203 kcal/mol (7996.7215 without restraints) Performing minimization step: 2068. Total energy = 8000.5116 kcal/mol (7996.7130 without restraints) Performing minimization step: 2069. Total energy = 8000.5028 kcal/mol (7996.7041 without restraints) Performing minimization step: 2070. Total energy = 8000.4943 kcal/mol (7996.6957 without restraints) Performing minimization step: 2071. Total energy = 8000.4855 kcal/mol (7996.6869 without restraints) Performing minimization step: 2072. Total energy = 8000.4771 kcal/mol (7996.6786 without restraints) Performing minimization step: 2073. Total energy = 8000.4685 kcal/mol (7996.6699 without restraints) Performing minimization step: 2074. Total energy = 8000.4602 kcal/mol (7996.6618 without restraints) Performing minimization step: 2075. Total energy = 8000.4516 kcal/mol (7996.6532 without restraints) Performing minimization step: 2076. Total energy = 8000.4434 kcal/mol (7996.6451 without restraints) Performing minimization step: 2077. Total energy = 8000.4350 kcal/mol (7996.6366 without restraints) Performing minimization step: 2078. Total energy = 8000.4257 kcal/mol (7996.6262 without restraints) Performing minimization step: 2079. Total energy = 8000.4186 kcal/mol (7996.6198 without restraints) Performing minimization step: 2080. Total energy = 8000.4091 kcal/mol (7996.6108 without restraints) Performing minimization step: 2081. Total energy = 8000.4000 kcal/mol (7996.6006 without restraints) Performing minimization step: 2082. Total energy = 8000.3925 kcal/mol (7996.5930 without restraints) Performing minimization step: 2083. Total energy = 8000.3841 kcal/mol (7996.5848 without restraints) Performing minimization step: 2084. Total energy = 8000.3763 kcal/mol (7996.5770 without restraints) Performing minimization step: 2085. Total energy = 8000.3683 kcal/mol (7996.5689 without restraints) Performing minimization step: 2086. Total energy = 8000.3605 kcal/mol (7996.5613 without restraints) Performing minimization step: 2087. Total energy = 8000.3526 kcal/mol (7996.5533 without restraints) Performing minimization step: 2088. Total energy = 8000.3449 kcal/mol (7996.5457 without restraints) Performing minimization step: 2089. Total energy = 8000.3371 kcal/mol (7996.5379 without restraints) Performing minimization step: 2090. Total energy = 8000.3295 kcal/mol (7996.5304 without restraints) Performing minimization step: 2091. Total energy = 8000.3218 kcal/mol (7996.5226 without restraints) Performing minimization step: 2092. Total energy = 8000.3143 kcal/mol (7996.5152 without restraints) Performing minimization step: 2093. Total energy = 8000.3066 kcal/mol (7996.5075 without restraints) Performing minimization step: 2094. Total energy = 8000.2993 kcal/mol (7996.5002 without restraints) Performing minimization step: 2095. Total energy = 8000.2917 kcal/mol (7996.4926 without restraints) Performing minimization step: 2096. Total energy = 8000.2844 kcal/mol (7996.4854 without restraints) Performing minimization step: 2097. Total energy = 8000.2769 kcal/mol (7996.4779 without restraints) Performing minimization step: 2098. Total energy = 8000.2697 kcal/mol (7996.4708 without restraints) Performing minimization step: 2099. Total energy = 8000.2623 kcal/mol (7996.4633 without restraints) Performing minimization step: 2100. Total energy = 8000.2552 kcal/mol (7996.4563 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 8000.2479 kcal/mol (7996.4490 without restraints) Performing minimization step: 2102. Total energy = 8000.2408 kcal/mol (7996.4419 without restraints) Performing minimization step: 2103. Total energy = 8000.2336 kcal/mol (7996.4347 without restraints) Performing minimization step: 2104. Total energy = 8000.2266 kcal/mol (7996.4278 without restraints) Performing minimization step: 2105. Total energy = 8000.2194 kcal/mol (7996.4206 without restraints) Performing minimization step: 2106. Total energy = 8000.2125 kcal/mol (7996.4138 without restraints) Performing minimization step: 2107. Total energy = 8000.2055 kcal/mol (7996.4067 without restraints) Performing minimization step: 2108. Total energy = 8000.1987 kcal/mol (7996.4000 without restraints) Performing minimization step: 2109. Total energy = 8000.1917 kcal/mol (7996.3930 without restraints) Performing minimization step: 2110. Total energy = 8000.1849 kcal/mol (7996.3863 without restraints) Performing minimization step: 2111. Total energy = 8000.1780 kcal/mol (7996.3794 without restraints) Performing minimization step: 2112. Total energy = 8000.1714 kcal/mol (7996.3728 without restraints) Performing minimization step: 2113. Total energy = 8000.1645 kcal/mol (7996.3660 without restraints) Performing minimization step: 2114. Total energy = 8000.1579 kcal/mol (7996.3595 without restraints) Performing minimization step: 2115. Total energy = 8000.1512 kcal/mol (7996.3527 without restraints) Performing minimization step: 2116. Total energy = 8000.1447 kcal/mol (7996.3462 without restraints) Performing minimization step: 2117. Total energy = 8000.1380 kcal/mol (7996.3395 without restraints) Performing minimization step: 2118. Total energy = 8000.1315 kcal/mol (7996.3332 without restraints) Performing minimization step: 2119. Total energy = 8000.1249 kcal/mol (7996.3265 without restraints) Performing minimization step: 2120. Total energy = 8000.1185 kcal/mol (7996.3202 without restraints) Performing minimization step: 2121. Total energy = 8000.1120 kcal/mol (7996.3136 without restraints) Performing minimization step: 2122. Total energy = 8000.1057 kcal/mol (7996.3074 without restraints) Performing minimization step: 2123. Total energy = 8000.0992 kcal/mol (7996.3009 without restraints) Performing minimization step: 2124. Total energy = 8000.0929 kcal/mol (7996.2947 without restraints) Performing minimization step: 2125. Total energy = 8000.0865 kcal/mol (7996.2883 without restraints) Performing minimization step: 2126. Total energy = 8000.0803 kcal/mol (7996.2822 without restraints) Performing minimization step: 2127. Total energy = 8000.0740 kcal/mol (7996.2758 without restraints) Performing minimization step: 2128. Total energy = 8000.0680 kcal/mol (7996.2700 without restraints) Performing minimization step: 2129. Total energy = 8000.0615 kcal/mol (7996.2634 without restraints) Performing minimization step: 2130. Total energy = 8000.0557 kcal/mol (7996.2578 without restraints) Performing minimization step: 2131. Total energy = 8000.0493 kcal/mol (7996.2512 without restraints) Performing minimization step: 2132. Total energy = 8000.0417 kcal/mol (7996.2420 without restraints) Performing minimization step: 2133. Total energy = 8000.0320 kcal/mol (7996.2326 without restraints) Performing minimization step: 2134. Total energy = 8000.0194 kcal/mol (7996.2208 without restraints) Performing minimization step: 2135. Total energy = 8000.0144 kcal/mol (7996.2160 without restraints) Performing minimization step: 2136. Total energy = 8000.0080 kcal/mol (7996.2096 without restraints) Performing minimization step: 2137. Total energy = 8000.0023 kcal/mol (7996.2040 without restraints) Performing minimization step: 2138. Total energy = 7999.9964 kcal/mol (7996.1981 without restraints) Performing minimization step: 2139. Total energy = 7999.9905 kcal/mol (7996.1922 without restraints) Performing minimization step: 2140. Total energy = 7999.9848 kcal/mol (7996.1866 without restraints) Performing minimization step: 2141. Total energy = 7999.9790 kcal/mol (7996.1807 without restraints) Performing minimization step: 2142. Total energy = 7999.9733 kcal/mol (7996.1751 without restraints) Performing minimization step: 2143. Total energy = 7999.9675 kcal/mol (7996.1693 without restraints) Performing minimization step: 2144. Total energy = 7999.9619 kcal/mol (7996.1638 without restraints) Performing minimization step: 2145. Total energy = 7999.9562 kcal/mol (7996.1580 without restraints) Performing minimization step: 2146. Total energy = 7999.9496 kcal/mol (7996.1505 without restraints) Performing minimization step: 2147. Total energy = 7999.9445 kcal/mol (7996.1454 without restraints) Performing minimization step: 2148. Total energy = 7999.9387 kcal/mol (7996.1397 without restraints) Performing minimization step: 2149. Total energy = 7999.9331 kcal/mol (7996.1342 without restraints) Performing minimization step: 2150. Total energy = 7999.9276 kcal/mol (7996.1287 without restraints) Performing minimization step: 2151. Total energy = 7999.9221 kcal/mol (7996.1231 without restraints) Performing minimization step: 2152. Total energy = 7999.9167 kcal/mol (7996.1178 without restraints) Performing minimization step: 2153. Total energy = 7999.9112 kcal/mol (7996.1123 without restraints) Performing minimization step: 2154. Total energy = 7999.9058 kcal/mol (7996.1070 without restraints) Performing minimization step: 2155. Total energy = 7999.9004 kcal/mol (7996.1015 without restraints) Performing minimization step: 2156. Total energy = 7999.8951 kcal/mol (7996.0963 without restraints) Performing minimization step: 2157. Total energy = 7999.8897 kcal/mol (7996.0909 without restraints) Performing minimization step: 2158. Total energy = 7999.8845 kcal/mol (7996.0857 without restraints) Performing minimization step: 2159. Total energy = 7999.8791 kcal/mol (7996.0803 without restraints) Performing minimization step: 2160. Total energy = 7999.8739 kcal/mol (7996.0752 without restraints) Performing minimization step: 2161. Total energy = 7999.8686 kcal/mol (7996.0699 without restraints) Performing minimization step: 2162. Total energy = 7999.8635 kcal/mol (7996.0648 without restraints) Performing minimization step: 2163. Total energy = 7999.8582 kcal/mol (7996.0595 without restraints) Performing minimization step: 2164. Total energy = 7999.8532 kcal/mol (7996.0545 without restraints) Performing minimization step: 2165. Total energy = 7999.8479 kcal/mol (7996.0493 without restraints) Performing minimization step: 2166. Total energy = 7999.8429 kcal/mol (7996.0443 without restraints) Performing minimization step: 2167. Total energy = 7999.8378 kcal/mol (7996.0391 without restraints) Performing minimization step: 2168. Total energy = 7999.8320 kcal/mol (7996.0326 without restraints) Performing minimization step: 2169. Total energy = 7999.8277 kcal/mol (7996.0288 without restraints) Performing minimization step: 2170. Total energy = 7999.8218 kcal/mol (7996.0232 without restraints) Performing minimization step: 2171. Total energy = 7999.8162 kcal/mol (7996.0168 without restraints) Performing minimization step: 2172. Total energy = 7999.8115 kcal/mol (7996.0122 without restraints) Performing minimization step: 2173. Total energy = 7999.8064 kcal/mol (7996.0071 without restraints) Performing minimization step: 2174. Total energy = 7999.8016 kcal/mol (7996.0023 without restraints) Performing minimization step: 2175. Total energy = 7999.7966 kcal/mol (7995.9973 without restraints) Performing minimization step: 2176. Total energy = 7999.7918 kcal/mol (7995.9926 without restraints) Performing minimization step: 2177. Total energy = 7999.7869 kcal/mol (7995.9876 without restraints) Performing minimization step: 2178. Total energy = 7999.7821 kcal/mol (7995.9829 without restraints) Performing minimization step: 2179. Total energy = 7999.7773 kcal/mol (7995.9780 without restraints) Performing minimization step: 2180. Total energy = 7999.7726 kcal/mol (7995.9734 without restraints) Performing minimization step: 2181. Total energy = 7999.7677 kcal/mol (7995.9685 without restraints) Performing minimization step: 2182. Total energy = 7999.7631 kcal/mol (7995.9639 without restraints) Performing minimization step: 2183. Total energy = 7999.7583 kcal/mol (7995.9591 without restraints) Performing minimization step: 2184. Total energy = 7999.7537 kcal/mol (7995.9545 without restraints) Performing minimization step: 2185. Total energy = 7999.7489 kcal/mol (7995.9498 without restraints) Performing minimization step: 2186. Total energy = 7999.7444 kcal/mol (7995.9453 without restraints) Performing minimization step: 2187. Total energy = 7999.7397 kcal/mol (7995.9405 without restraints) Performing minimization step: 2188. Total energy = 7999.7352 kcal/mol (7995.9361 without restraints) Performing minimization step: 2189. Total energy = 7999.7305 kcal/mol (7995.9314 without restraints) Performing minimization step: 2190. Total energy = 7999.7260 kcal/mol (7995.9270 without restraints) Performing minimization step: 2191. Total energy = 7999.7214 kcal/mol (7995.9223 without restraints) Performing minimization step: 2192. Total energy = 7999.7170 kcal/mol (7995.9179 without restraints) Performing minimization step: 2193. Total energy = 7999.7124 kcal/mol (7995.9134 without restraints) Performing minimization step: 2194. Total energy = 7999.7080 kcal/mol (7995.9090 without restraints) Performing minimization step: 2195. Total energy = 7999.7035 kcal/mol (7995.9045 without restraints) Performing minimization step: 2196. Total energy = 7999.6991 kcal/mol (7995.9002 without restraints) Performing minimization step: 2197. Total energy = 7999.6946 kcal/mol (7995.8956 without restraints) Performing minimization step: 2198. Total energy = 7999.6904 kcal/mol (7995.8915 without restraints) Performing minimization step: 2199. Total energy = 7999.6859 kcal/mol (7995.8870 without restraints) Performing minimization step: 2200. Total energy = 7999.6816 kcal/mol (7995.8828 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7999.6772 kcal/mol (7995.8783 without restraints) Performing minimization step: 2202. Total energy = 7999.6730 kcal/mol (7995.8741 without restraints) Performing minimization step: 2203. Total energy = 7999.6686 kcal/mol (7995.8698 without restraints) Performing minimization step: 2204. Total energy = 7999.6644 kcal/mol (7995.8656 without restraints) Performing minimization step: 2205. Total energy = 7999.6601 kcal/mol (7995.8613 without restraints) Performing minimization step: 2206. Total energy = 7999.6559 kcal/mol (7995.8572 without restraints) Performing minimization step: 2207. Total energy = 7999.6516 kcal/mol (7995.8528 without restraints) Performing minimization step: 2208. Total energy = 7999.6475 kcal/mol (7995.8488 without restraints) Performing minimization step: 2209. Total energy = 7999.6433 kcal/mol (7995.8445 without restraints) Performing minimization step: 2210. Total energy = 7999.6392 kcal/mol (7995.8405 without restraints) Performing minimization step: 2211. Total energy = 7999.6350 kcal/mol (7995.8362 without restraints) Performing minimization step: 2212. Total energy = 7999.6309 kcal/mol (7995.8322 without restraints) Performing minimization step: 2213. Total energy = 7999.6267 kcal/mol (7995.8280 without restraints) Performing minimization step: 2214. Total energy = 7999.6227 kcal/mol (7995.8241 without restraints) Performing minimization step: 2215. Total energy = 7999.6186 kcal/mol (7995.8199 without restraints) Performing minimization step: 2216. Total energy = 7999.6146 kcal/mol (7995.8160 without restraints) Performing minimization step: 2217. Total energy = 7999.6105 kcal/mol (7995.8118 without restraints) Performing minimization step: 2218. Total energy = 7999.6066 kcal/mol (7995.8080 without restraints) Performing minimization step: 2219. Total energy = 7999.6025 kcal/mol (7995.8039 without restraints) Performing minimization step: 2220. Total energy = 7999.5986 kcal/mol (7995.8000 without restraints) Performing minimization step: 2221. Total energy = 7999.5945 kcal/mol (7995.7959 without restraints) Performing minimization step: 2222. Total energy = 7999.5907 kcal/mol (7995.7922 without restraints) Performing minimization step: 2223. Total energy = 7999.5866 kcal/mol (7995.7881 without restraints) Performing minimization step: 2224. Total energy = 7999.5828 kcal/mol (7995.7843 without restraints) Performing minimization step: 2225. Total energy = 7999.5788 kcal/mol (7995.7803 without restraints) Performing minimization step: 2226. Total energy = 7999.5750 kcal/mol (7995.7766 without restraints) Performing minimization step: 2227. Total energy = 7999.5711 kcal/mol (7995.7726 without restraints) Performing minimization step: 2228. Total energy = 7999.5673 kcal/mol (7995.7689 without restraints) Performing minimization step: 2229. Total energy = 7999.5634 kcal/mol (7995.7650 without restraints) Performing minimization step: 2230. Total energy = 7999.5586 kcal/mol (7995.7591 without restraints) Performing minimization step: 2231. Total energy = 7999.5527 kcal/mol (7995.7539 without restraints) Performing minimization step: 2232. Total energy = 7999.5426 kcal/mol (7995.7446 without restraints) Performing minimization step: 2233. Total energy = 7999.5380 kcal/mol (7995.7386 without restraints) Performing minimization step: 2234. Total energy = 7999.5325 kcal/mol (7995.7333 without restraints) Performing minimization step: 2235. Total energy = 7999.5243 kcal/mol (7995.7254 without restraints) Performing minimization step: 2236. Total energy = 7999.5208 kcal/mol (7995.7216 without restraints) Performing minimization step: 2237. Total energy = 7999.5172 kcal/mol (7995.7179 without restraints) Performing minimization step: 2238. Total energy = 7999.5136 kcal/mol (7995.7144 without restraints) Performing minimization step: 2239. Total energy = 7999.5099 kcal/mol (7995.7107 without restraints) Performing minimization step: 2240. Total energy = 7999.5063 kcal/mol (7995.7072 without restraints) Performing minimization step: 2241. Total energy = 7999.5027 kcal/mol (7995.7035 without restraints) Performing minimization step: 2242. Total energy = 7999.4992 kcal/mol (7995.7000 without restraints) Performing minimization step: 2243. Total energy = 7999.4955 kcal/mol (7995.6964 without restraints) Performing minimization step: 2244. Total energy = 7999.4921 kcal/mol (7995.6929 without restraints) Performing minimization step: 2245. Total energy = 7999.4885 kcal/mol (7995.6893 without restraints) Performing minimization step: 2246. Total energy = 7999.4850 kcal/mol (7995.6859 without restraints) Performing minimization step: 2247. Total energy = 7999.4814 kcal/mol (7995.6823 without restraints) Performing minimization step: 2248. Total energy = 7999.4780 kcal/mol (7995.6789 without restraints) Performing minimization step: 2249. Total energy = 7999.4745 kcal/mol (7995.6754 without restraints) Performing minimization step: 2250. Total energy = 7999.4711 kcal/mol (7995.6720 without restraints) Performing minimization step: 2251. Total energy = 7999.4676 kcal/mol (7995.6685 without restraints) Performing minimization step: 2252. Total energy = 7999.4642 kcal/mol (7995.6651 without restraints) Performing minimization step: 2253. Total energy = 7999.4607 kcal/mol (7995.6616 without restraints) Performing minimization step: 2254. Total energy = 7999.4574 kcal/mol (7995.6583 without restraints) Performing minimization step: 2255. Total energy = 7999.4539 kcal/mol (7995.6549 without restraints) Performing minimization step: 2256. Total energy = 7999.4506 kcal/mol (7995.6516 without restraints) Performing minimization step: 2257. Total energy = 7999.4472 kcal/mol (7995.6481 without restraints) Performing minimization step: 2258. Total energy = 7999.4439 kcal/mol (7995.6449 without restraints) Performing minimization step: 2259. Total energy = 7999.4405 kcal/mol (7995.6415 without restraints) Performing minimization step: 2260. Total energy = 7999.4372 kcal/mol (7995.6383 without restraints) Performing minimization step: 2261. Total energy = 7999.4339 kcal/mol (7995.6349 without restraints) Performing minimization step: 2262. Total energy = 7999.4306 kcal/mol (7995.6317 without restraints) Performing minimization step: 2263. Total energy = 7999.4273 kcal/mol (7995.6283 without restraints) Performing minimization step: 2264. Total energy = 7999.4241 kcal/mol (7995.6251 without restraints) Performing minimization step: 2265. Total energy = 7999.4208 kcal/mol (7995.6218 without restraints) Performing minimization step: 2266. Total energy = 7999.4176 kcal/mol (7995.6186 without restraints) Performing minimization step: 2267. Total energy = 7999.4143 kcal/mol (7995.6153 without restraints) Performing minimization step: 2268. Total energy = 7999.4111 kcal/mol (7995.6122 without restraints) Performing minimization step: 2269. Total energy = 7999.4079 kcal/mol (7995.6089 without restraints) Performing minimization step: 2270. Total energy = 7999.4047 kcal/mol (7995.6058 without restraints) Performing minimization step: 2271. Total energy = 7999.4015 kcal/mol (7995.6026 without restraints) Performing minimization step: 2272. Total energy = 7999.3984 kcal/mol (7995.5995 without restraints) Performing minimization step: 2273. Total energy = 7999.3952 kcal/mol (7995.5963 without restraints) Performing minimization step: 2274. Total energy = 7999.3916 kcal/mol (7995.5923 without restraints) Performing minimization step: 2275. Total energy = 7999.3889 kcal/mol (7995.5899 without restraints) Performing minimization step: 2276. Total energy = 7999.3853 kcal/mol (7995.5864 without restraints) Performing minimization step: 2277. Total energy = 7999.3818 kcal/mol (7995.5825 without restraints) Performing minimization step: 2278. Total energy = 7999.3789 kcal/mol (7995.5796 without restraints) Performing minimization step: 2279. Total energy = 7999.3757 kcal/mol (7995.5764 without restraints) Performing minimization step: 2280. Total energy = 7999.3727 kcal/mol (7995.5735 without restraints) Performing minimization step: 2281. Total energy = 7999.3696 kcal/mol (7995.5703 without restraints) Performing minimization step: 2282. Total energy = 7999.3666 kcal/mol (7995.5673 without restraints) Performing minimization step: 2283. Total energy = 7999.3635 kcal/mol (7995.5643 without restraints) Performing minimization step: 2284. Total energy = 7999.3605 kcal/mol (7995.5613 without restraints) Performing minimization step: 2285. Total energy = 7999.3574 kcal/mol (7995.5582 without restraints) Performing minimization step: 2286. Total energy = 7999.3545 kcal/mol (7995.5553 without restraints) Performing minimization step: 2287. Total energy = 7999.3514 kcal/mol (7995.5522 without restraints) Performing minimization step: 2288. Total energy = 7999.3485 kcal/mol (7995.5493 without restraints) Performing minimization step: 2289. Total energy = 7999.3455 kcal/mol (7995.5463 without restraints) Performing minimization step: 2290. Total energy = 7999.3426 kcal/mol (7995.5434 without restraints) Performing minimization step: 2291. Total energy = 7999.3396 kcal/mol (7995.5404 without restraints) Performing minimization step: 2292. Total energy = 7999.3367 kcal/mol (7995.5375 without restraints) Performing minimization step: 2293. Total energy = 7999.3337 kcal/mol (7995.5346 without restraints) Performing minimization step: 2294. Total energy = 7999.3309 kcal/mol (7995.5317 without restraints) Performing minimization step: 2295. Total energy = 7999.3279 kcal/mol (7995.5287 without restraints) Performing minimization step: 2296. Total energy = 7999.3251 kcal/mol (7995.5259 without restraints) Performing minimization step: 2297. Total energy = 7999.3221 kcal/mol (7995.5230 without restraints) Performing minimization step: 2298. Total energy = 7999.3193 kcal/mol (7995.5202 without restraints) Performing minimization step: 2299. Total energy = 7999.3164 kcal/mol (7995.5173 without restraints) Performing minimization step: 2300. Total energy = 7999.3136 kcal/mol (7995.5145 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 7999.3107 kcal/mol (7995.5116 without restraints) Performing minimization step: 2302. Total energy = 7999.3079 kcal/mol (7995.5088 without restraints) Performing minimization step: 2303. Total energy = 7999.3051 kcal/mol (7995.5060 without restraints) Performing minimization step: 2304. Total energy = 7999.3023 kcal/mol (7995.5032 without restraints) Performing minimization step: 2305. Total energy = 7999.2995 kcal/mol (7995.5004 without restraints) Performing minimization step: 2306. Total energy = 7999.2967 kcal/mol (7995.4977 without restraints) Performing minimization step: 2307. Total energy = 7999.2939 kcal/mol (7995.4948 without restraints) Performing minimization step: 2308. Total energy = 7999.2912 kcal/mol (7995.4921 without restraints) Performing minimization step: 2309. Total energy = 7999.2884 kcal/mol (7995.4893 without restraints) Performing minimization step: 2310. Total energy = 7999.2857 kcal/mol (7995.4866 without restraints) Performing minimization step: 2311. Total energy = 7999.2829 kcal/mol (7995.4839 without restraints) Performing minimization step: 2312. Total energy = 7999.2802 kcal/mol (7995.4812 without restraints) Performing minimization step: 2313. Total energy = 7999.2775 kcal/mol (7995.4784 without restraints) Performing minimization step: 2314. Total energy = 7999.2748 kcal/mol (7995.4758 without restraints) Performing minimization step: 2315. Total energy = 7999.2721 kcal/mol (7995.4730 without restraints) Performing minimization step: 2316. Total energy = 7999.2694 kcal/mol (7995.4704 without restraints) Performing minimization step: 2317. Total energy = 7999.2667 kcal/mol (7995.4677 without restraints) Performing minimization step: 2318. Total energy = 7999.2641 kcal/mol (7995.4651 without restraints) Performing minimization step: 2319. Total energy = 7999.2614 kcal/mol (7995.4624 without restraints) Performing minimization step: 2320. Total energy = 7999.2588 kcal/mol (7995.4598 without restraints) Performing minimization step: 2321. Total energy = 7999.2561 kcal/mol (7995.4571 without restraints) Performing minimization step: 2322. Total energy = 7999.2535 kcal/mol (7995.4545 without restraints) Performing minimization step: 2323. Total energy = 7999.2508 kcal/mol (7995.4518 without restraints) Performing minimization step: 2324. Total energy = 7999.2483 kcal/mol (7995.4493 without restraints) Performing minimization step: 2325. Total energy = 7999.2456 kcal/mol (7995.4467 without restraints) Performing minimization step: 2326. Total energy = 7999.2431 kcal/mol (7995.4441 without restraints) Performing minimization step: 2327. Total energy = 7999.2404 kcal/mol (7995.4415 without restraints) Performing minimization step: 2328. Total energy = 7999.2379 kcal/mol (7995.4390 without restraints) Performing minimization step: 2329. Total energy = 7999.2353 kcal/mol (7995.4364 without restraints) Performing minimization step: 2330. Total energy = 7999.2328 kcal/mol (7995.4339 without restraints) Performing minimization step: 2331. Total energy = 7999.2302 kcal/mol (7995.4313 without restraints) Performing minimization step: 2332. Total energy = 7999.2277 kcal/mol (7995.4288 without restraints) Performing minimization step: 2333. Total energy = 7999.2251 kcal/mol (7995.4262 without restraints) Performing minimization step: 2334. Total energy = 7999.2227 kcal/mol (7995.4238 without restraints) Performing minimization step: 2335. Total energy = 7999.2201 kcal/mol (7995.4212 without restraints) Performing minimization step: 2336. Total energy = 7999.2176 kcal/mol (7995.4188 without restraints) Performing minimization step: 2337. Total energy = 7999.2151 kcal/mol (7995.4162 without restraints) Performing minimization step: 2338. Total energy = 7999.2127 kcal/mol (7995.4138 without restraints) Performing minimization step: 2339. Total energy = 7999.2102 kcal/mol (7995.4113 without restraints) Performing minimization step: 2340. Total energy = 7999.2077 kcal/mol (7995.4089 without restraints) Performing minimization step: 2341. Total energy = 7999.2052 kcal/mol (7995.4064 without restraints) Performing minimization step: 2342. Total energy = 7999.2028 kcal/mol (7995.4040 without restraints) Performing minimization step: 2343. Total energy = 7999.2003 kcal/mol (7995.4015 without restraints) Performing minimization step: 2344. Total energy = 7999.1979 kcal/mol (7995.3991 without restraints) Performing minimization step: 2345. Total energy = 7999.1955 kcal/mol (7995.3966 without restraints) Performing minimization step: 2346. Total energy = 7999.1931 kcal/mol (7995.3943 without restraints) Performing minimization step: 2347. Total energy = 7999.1906 kcal/mol (7995.3918 without restraints) Performing minimization step: 2348. Total energy = 7999.1883 kcal/mol (7995.3895 without restraints) Performing minimization step: 2349. Total energy = 7999.1858 kcal/mol (7995.3870 without restraints) Performing minimization step: 2350. Total energy = 7999.1829 kcal/mol (7995.3836 without restraints) Performing minimization step: 2351. Total energy = 7999.1789 kcal/mol (7995.3798 without restraints) Performing minimization step: 2352. Total energy = 7999.1729 kcal/mol (7995.3744 without restraints) Performing minimization step: 2353. Total energy = 7999.1706 kcal/mol (7995.3718 without restraints) Performing minimization step: 2354. Total energy = 7999.1678 kcal/mol (7995.3684 without restraints) Performing minimization step: 2355. Total energy = 7999.1641 kcal/mol (7995.3649 without restraints) Performing minimization step: 2356. Total energy = 7999.1592 kcal/mol (7995.3603 without restraints) Performing minimization step: 2357. Total energy = 7999.1573 kcal/mol (7995.3585 without restraints) Performing minimization step: 2358. Total energy = 7999.1544 kcal/mol (7995.3550 without restraints) Performing minimization step: 2359. Total energy = 7999.1512 kcal/mol (7995.3522 without restraints) Performing minimization step: 2360. Total energy = 7999.1459 kcal/mol (7995.3469 without restraints) Performing minimization step: 2361. Total energy = 7999.1438 kcal/mol (7995.3447 without restraints) Performing minimization step: 2362. Total energy = 7999.1416 kcal/mol (7995.3425 without restraints) Performing minimization step: 2363. Total energy = 7999.1393 kcal/mol (7995.3402 without restraints) Performing minimization step: 2364. Total energy = 7999.1371 kcal/mol (7995.3380 without restraints) Performing minimization step: 2365. Total energy = 7999.1349 kcal/mol (7995.3357 without restraints) Performing minimization step: 2366. Total energy = 7999.1327 kcal/mol (7995.3336 without restraints) Performing minimization step: 2367. Total energy = 7999.1304 kcal/mol (7995.3313 without restraints) Performing minimization step: 2368. Total energy = 7999.1283 kcal/mol (7995.3292 without restraints) Performing minimization step: 2369. Total energy = 7999.1260 kcal/mol (7995.3269 without restraints) Performing minimization step: 2370. Total energy = 7999.1239 kcal/mol (7995.3248 without restraints) Performing minimization step: 2371. Total energy = 7999.1216 kcal/mol (7995.3226 without restraints) Performing minimization step: 2372. Total energy = 7999.1195 kcal/mol (7995.3204 without restraints) Performing minimization step: 2373. Total energy = 7999.1173 kcal/mol (7995.3182 without restraints) Performing minimization step: 2374. Total energy = 7999.1152 kcal/mol (7995.3161 without restraints) Performing minimization step: 2375. Total energy = 7999.1130 kcal/mol (7995.3139 without restraints) Performing minimization step: 2376. Total energy = 7999.1109 kcal/mol (7995.3118 without restraints) Performing minimization step: 2377. Total energy = 7999.1087 kcal/mol (7995.3096 without restraints) Performing minimization step: 2378. Total energy = 7999.1066 kcal/mol (7995.3076 without restraints) Performing minimization step: 2379. Total energy = 7999.1044 kcal/mol (7995.3054 without restraints) Performing minimization step: 2380. Total energy = 7999.1024 kcal/mol (7995.3033 without restraints) Performing minimization step: 2381. Total energy = 7999.1002 kcal/mol (7995.3012 without restraints) Performing minimization step: 2382. Total energy = 7999.0981 kcal/mol (7995.2991 without restraints) Performing minimization step: 2383. Total energy = 7999.0960 kcal/mol (7995.2970 without restraints) Performing minimization step: 2384. Total energy = 7999.0940 kcal/mol (7995.2949 without restraints) Performing minimization step: 2385. Total energy = 7999.0918 kcal/mol (7995.2928 without restraints) Performing minimization step: 2386. Total energy = 7999.0898 kcal/mol (7995.2908 without restraints) Performing minimization step: 2387. Total energy = 7999.0877 kcal/mol (7995.2887 without restraints) Performing minimization step: 2388. Total energy = 7999.0857 kcal/mol (7995.2867 without restraints) Performing minimization step: 2389. Total energy = 7999.0836 kcal/mol (7995.2846 without restraints) Performing minimization step: 2390. Total energy = 7999.0815 kcal/mol (7995.2826 without restraints) Performing minimization step: 2391. Total energy = 7999.0795 kcal/mol (7995.2805 without restraints) Performing minimization step: 2392. Total energy = 7999.0775 kcal/mol (7995.2785 without restraints) Performing minimization step: 2393. Total energy = 7999.0754 kcal/mol (7995.2764 without restraints) Performing minimization step: 2394. Total energy = 7999.0734 kcal/mol (7995.2744 without restraints) Performing minimization step: 2395. Total energy = 7999.0713 kcal/mol (7995.2724 without restraints) Performing minimization step: 2396. Total energy = 7999.0694 kcal/mol (7995.2704 without restraints) Performing minimization step: 2397. Total energy = 7999.0673 kcal/mol (7995.2684 without restraints) Performing minimization step: 2398. Total energy = 7999.0654 kcal/mol (7995.2664 without restraints) Performing minimization step: 2399. Total energy = 7999.0633 kcal/mol (7995.2644 without restraints) Performing minimization step: 2400. Total energy = 7999.0614 kcal/mol (7995.2624 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7999.0594 kcal/mol (7995.2604 without restraints) Performing minimization step: 2402. Total energy = 7999.0574 kcal/mol (7995.2585 without restraints) Performing minimization step: 2403. Total energy = 7999.0554 kcal/mol (7995.2565 without restraints) Performing minimization step: 2404. Total energy = 7999.0535 kcal/mol (7995.2546 without restraints) Performing minimization step: 2405. Total energy = 7999.0515 kcal/mol (7995.2526 without restraints) Performing minimization step: 2406. Total energy = 7999.0496 kcal/mol (7995.2507 without restraints) Performing minimization step: 2407. Total energy = 7999.0476 kcal/mol (7995.2487 without restraints) Performing minimization step: 2408. Total energy = 7999.0454 kcal/mol (7995.2461 without restraints) Performing minimization step: 2409. Total energy = 7999.0437 kcal/mol (7995.2447 without restraints) Performing minimization step: 2410. Total energy = 7999.0414 kcal/mol (7995.2425 without restraints) Performing minimization step: 2411. Total energy = 7999.0393 kcal/mol (7995.2400 without restraints) Performing minimization step: 2412. Total energy = 7999.0375 kcal/mol (7995.2382 without restraints) Performing minimization step: 2413. Total energy = 7999.0355 kcal/mol (7995.2363 without restraints) Performing minimization step: 2414. Total energy = 7999.0336 kcal/mol (7995.2344 without restraints) Performing minimization step: 2415. Total energy = 7999.0317 kcal/mol (7995.2325 without restraints) Performing minimization step: 2416. Total energy = 7999.0298 kcal/mol (7995.2306 without restraints) Performing minimization step: 2417. Total energy = 7999.0279 kcal/mol (7995.2287 without restraints) Performing minimization step: 2418. Total energy = 7999.0260 kcal/mol (7995.2269 without restraints) Performing minimization step: 2419. Total energy = 7999.0241 kcal/mol (7995.2249 without restraints) Performing minimization step: 2420. Total energy = 7999.0223 kcal/mol (7995.2231 without restraints) Performing minimization step: 2421. Total energy = 7999.0204 kcal/mol (7995.2212 without restraints) Performing minimization step: 2422. Total energy = 7999.0186 kcal/mol (7995.2194 without restraints) Performing minimization step: 2423. Total energy = 7999.0167 kcal/mol (7995.2175 without restraints) Performing minimization step: 2424. Total energy = 7999.0149 kcal/mol (7995.2157 without restraints) Performing minimization step: 2425. Total energy = 7999.0130 kcal/mol (7995.2138 without restraints) Performing minimization step: 2426. Total energy = 7999.0112 kcal/mol (7995.2120 without restraints) Performing minimization step: 2427. Total energy = 7999.0093 kcal/mol (7995.2102 without restraints) Performing minimization step: 2428. Total energy = 7999.0075 kcal/mol (7995.2084 without restraints) Performing minimization step: 2429. Total energy = 7999.0057 kcal/mol (7995.2065 without restraints) Performing minimization step: 2430. Total energy = 7999.0039 kcal/mol (7995.2048 without restraints) Performing minimization step: 2431. Total energy = 7999.0020 kcal/mol (7995.2029 without restraints) Performing minimization step: 2432. Total energy = 7999.0003 kcal/mol (7995.2011 without restraints) Performing minimization step: 2433. Total energy = 7998.9984 kcal/mol (7995.1993 without restraints) Performing minimization step: 2434. Total energy = 7998.9967 kcal/mol (7995.1976 without restraints) Performing minimization step: 2435. Total energy = 7998.9949 kcal/mol (7995.1957 without restraints) Performing minimization step: 2436. Total energy = 7998.9931 kcal/mol (7995.1940 without restraints) Performing minimization step: 2437. Total energy = 7998.9913 kcal/mol (7995.1922 without restraints) Performing minimization step: 2438. Total energy = 7998.9896 kcal/mol (7995.1905 without restraints) Performing minimization step: 2439. Total energy = 7998.9878 kcal/mol (7995.1887 without restraints) Performing minimization step: 2440. Total energy = 7998.9860 kcal/mol (7995.1869 without restraints) Performing minimization step: 2441. Total energy = 7998.9842 kcal/mol (7995.1851 without restraints) Performing minimization step: 2442. Total energy = 7998.9825 kcal/mol (7995.1834 without restraints) Performing minimization step: 2443. Total energy = 7998.9808 kcal/mol (7995.1817 without restraints) Performing minimization step: 2444. Total energy = 7998.9790 kcal/mol (7995.1800 without restraints) Performing minimization step: 2445. Total energy = 7998.9773 kcal/mol (7995.1782 without restraints) Performing minimization step: 2446. Total energy = 7998.9756 kcal/mol (7995.1765 without restraints) Performing minimization step: 2447. Total energy = 7998.9738 kcal/mol (7995.1747 without restraints) Performing minimization step: 2448. Total energy = 7998.9721 kcal/mol (7995.1731 without restraints) Performing minimization step: 2449. Total energy = 7998.9704 kcal/mol (7995.1713 without restraints) Performing minimization step: 2450. Total energy = 7998.9687 kcal/mol (7995.1696 without restraints) Performing minimization step: 2451. Total energy = 7998.9670 kcal/mol (7995.1679 without restraints) Performing minimization step: 2452. Total energy = 7998.9653 kcal/mol (7995.1663 without restraints) Performing minimization step: 2453. Total energy = 7998.9636 kcal/mol (7995.1645 without restraints) Performing minimization step: 2454. Total energy = 7998.9619 kcal/mol (7995.1629 without restraints) Performing minimization step: 2455. Total energy = 7998.9602 kcal/mol (7995.1611 without restraints) Performing minimization step: 2456. Total energy = 7998.9586 kcal/mol (7995.1596 without restraints) Performing minimization step: 2457. Total energy = 7998.9568 kcal/mol (7995.1578 without restraints) Performing minimization step: 2458. Total energy = 7998.9552 kcal/mol (7995.1562 without restraints) Performing minimization step: 2459. Total energy = 7998.9535 kcal/mol (7995.1544 without restraints) Performing minimization step: 2460. Total energy = 7998.9519 kcal/mol (7995.1529 without restraints) Performing minimization step: 2461. Total energy = 7998.9502 kcal/mol (7995.1512 without restraints) Performing minimization step: 2462. Total energy = 7998.9486 kcal/mol (7995.1496 without restraints) Performing minimization step: 2463. Total energy = 7998.9469 kcal/mol (7995.1479 without restraints) Performing minimization step: 2464. Total energy = 7998.9453 kcal/mol (7995.1463 without restraints) Performing minimization step: 2465. Total energy = 7998.9436 kcal/mol (7995.1447 without restraints) Performing minimization step: 2466. Total energy = 7998.9420 kcal/mol (7995.1431 without restraints) Performing minimization step: 2467. Total energy = 7998.9404 kcal/mol (7995.1414 without restraints) Performing minimization step: 2468. Total energy = 7998.9388 kcal/mol (7995.1398 without restraints) Performing minimization step: 2469. Total energy = 7998.9371 kcal/mol (7995.1382 without restraints) Performing minimization step: 2470. Total energy = 7998.9355 kcal/mol (7995.1366 without restraints) Performing minimization step: 2471. Total energy = 7998.9339 kcal/mol (7995.1350 without restraints) Performing minimization step: 2472. Total energy = 7998.9323 kcal/mol (7995.1334 without restraints) Performing minimization step: 2473. Total energy = 7998.9307 kcal/mol (7995.1318 without restraints) Performing minimization step: 2474. Total energy = 7998.9291 kcal/mol (7995.1302 without restraints) Performing minimization step: 2475. Total energy = 7998.9275 kcal/mol (7995.1286 without restraints) Performing minimization step: 2476. Total energy = 7998.9260 kcal/mol (7995.1270 without restraints) Performing minimization step: 2477. Total energy = 7998.9243 kcal/mol (7995.1254 without restraints) Performing minimization step: 2478. Total energy = 7998.9228 kcal/mol (7995.1239 without restraints) Performing minimization step: 2479. Total energy = 7998.9212 kcal/mol (7995.1223 without restraints) Performing minimization step: 2480. Total energy = 7998.9197 kcal/mol (7995.1207 without restraints) Performing minimization step: 2481. Total energy = 7998.9181 kcal/mol (7995.1191 without restraints) Performing minimization step: 2482. Total energy = 7998.9165 kcal/mol (7995.1176 without restraints) Performing minimization step: 2483. Total energy = 7998.9149 kcal/mol (7995.1160 without restraints) Performing minimization step: 2484. Total energy = 7998.9134 kcal/mol (7995.1145 without restraints) Performing minimization step: 2485. Total energy = 7998.9118 kcal/mol (7995.1129 without restraints) Performing minimization step: 2486. Total energy = 7998.9103 kcal/mol (7995.1114 without restraints) Performing minimization step: 2487. Total energy = 7998.9088 kcal/mol (7995.1099 without restraints) Performing minimization step: 2488. Total energy = 7998.9073 kcal/mol (7995.1084 without restraints) Performing minimization step: 2489. Total energy = 7998.9057 kcal/mol (7995.1068 without restraints) Performing minimization step: 2490. Total energy = 7998.9038 kcal/mol (7995.1046 without restraints) Performing minimization step: 2491. Total energy = 7998.9013 kcal/mol (7995.1022 without restraints) Performing minimization step: 2492. Total energy = 7998.8977 kcal/mol (7995.0990 without restraints) Performing minimization step: 2493. Total energy = 7998.8962 kcal/mol (7995.0973 without restraints) Performing minimization step: 2494. Total energy = 7998.8944 kcal/mol (7995.0951 without restraints) Performing minimization step: 2495. Total energy = 7998.8921 kcal/mol (7995.0929 without restraints) Performing minimization step: 2496. Total energy = 7998.8890 kcal/mol (7995.0900 without restraints) Performing minimization step: 2497. Total energy = 7998.8875 kcal/mol (7995.0883 without restraints) Performing minimization step: 2498. Total energy = 7998.8861 kcal/mol (7995.0870 without restraints) Performing minimization step: 2499. Total energy = 7998.8840 kcal/mol (7995.0847 without restraints) Performing minimization step: 2500. Total energy = 7998.8818 kcal/mol (7995.0827 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 7998.8787 kcal/mol (7995.0796 without restraints) Performing minimization step: 2502. Total energy = 7998.8774 kcal/mol (7995.0784 without restraints) Performing minimization step: 2503. Total energy = 7998.8756 kcal/mol (7995.0764 without restraints) Performing minimization step: 2504. Total energy = 7998.8741 kcal/mol (7995.0752 without restraints) Performing minimization step: 2505. Total energy = 7998.8708 kcal/mol (7995.0718 without restraints) Performing minimization step: 2506. Total energy = 7998.8697 kcal/mol (7995.0707 without restraints) Performing minimization step: 2507. Total energy = 7998.8678 kcal/mol (7995.0686 without restraints) Performing minimization step: 2508. Total energy = 7998.8664 kcal/mol (7995.0674 without restraints) Performing minimization step: 2509. Total energy = 7998.8631 kcal/mol (7995.0641 without restraints) Performing minimization step: 2510. Total energy = 7998.8618 kcal/mol (7995.0626 without restraints) Performing minimization step: 2511. Total energy = 7998.8605 kcal/mol (7995.0616 without restraints) Performing minimization step: 2512. Total energy = 7998.8590 kcal/mol (7995.0600 without restraints) Performing minimization step: 2513. Total energy = 7998.8576 kcal/mol (7995.0586 without restraints) Performing minimization step: 2514. Total energy = 7998.8562 kcal/mol (7995.0572 without restraints) Performing minimization step: 2515. Total energy = 7998.8548 kcal/mol (7995.0558 without restraints) Performing minimization step: 2516. Total energy = 7998.8534 kcal/mol (7995.0545 without restraints) Performing minimization step: 2517. Total energy = 7998.8520 kcal/mol (7995.0531 without restraints) Performing minimization step: 2518. Total energy = 7998.8507 kcal/mol (7995.0517 without restraints) Performing minimization step: 2519. Total energy = 7998.8493 kcal/mol (7995.0503 without restraints) Performing minimization step: 2520. Total energy = 7998.8479 kcal/mol (7995.0490 without restraints) Performing minimization step: 2521. Total energy = 7998.8465 kcal/mol (7995.0476 without restraints) Performing minimization step: 2522. Total energy = 7998.8452 kcal/mol (7995.0462 without restraints) Performing minimization step: 2523. Total energy = 7998.8438 kcal/mol (7995.0448 without restraints) Performing minimization step: 2524. Total energy = 7998.8424 kcal/mol (7995.0435 without restraints) Performing minimization step: 2525. Total energy = 7998.8410 kcal/mol (7995.0421 without restraints) Performing minimization step: 2526. Total energy = 7998.8395 kcal/mol (7995.0404 without restraints) Performing minimization step: 2527. Total energy = 7998.8382 kcal/mol (7995.0391 without restraints) Performing minimization step: 2528. Total energy = 7998.8369 kcal/mol (7995.0377 without restraints) Performing minimization step: 2529. Total energy = 7998.8355 kcal/mol (7995.0364 without restraints) Performing minimization step: 2530. Total energy = 7998.8342 kcal/mol (7995.0351 without restraints) Performing minimization step: 2531. Total energy = 7998.8328 kcal/mol (7995.0337 without restraints) Performing minimization step: 2532. Total energy = 7998.8315 kcal/mol (7995.0324 without restraints) Performing minimization step: 2533. Total energy = 7998.8302 kcal/mol (7995.0310 without restraints) Performing minimization step: 2534. Total energy = 7998.8288 kcal/mol (7995.0298 without restraints) Performing minimization step: 2535. Total energy = 7998.8275 kcal/mol (7995.0284 without restraints) Performing minimization step: 2536. Total energy = 7998.8262 kcal/mol (7995.0271 without restraints) Performing minimization step: 2537. Total energy = 7998.8249 kcal/mol (7995.0258 without restraints) Performing minimization step: 2538. Total energy = 7998.8236 kcal/mol (7995.0245 without restraints) Performing minimization step: 2539. Total energy = 7998.8222 kcal/mol (7995.0231 without restraints) Performing minimization step: 2540. Total energy = 7998.8209 kcal/mol (7995.0219 without restraints) Performing minimization step: 2541. Total energy = 7998.8196 kcal/mol (7995.0205 without restraints) Performing minimization step: 2542. Total energy = 7998.8183 kcal/mol (7995.0193 without restraints) Performing minimization step: 2543. Total energy = 7998.8170 kcal/mol (7995.0179 without restraints) Performing minimization step: 2544. Total energy = 7998.8157 kcal/mol (7995.0167 without restraints) Performing minimization step: 2545. Total energy = 7998.8144 kcal/mol (7995.0154 without restraints) Performing minimization step: 2546. Total energy = 7998.8132 kcal/mol (7995.0141 without restraints) Performing minimization step: 2547. Total energy = 7998.8119 kcal/mol (7995.0128 without restraints) Performing minimization step: 2548. Total energy = 7998.8106 kcal/mol (7995.0115 without restraints) Performing minimization step: 2549. Total energy = 7998.8093 kcal/mol (7995.0102 without restraints) Performing minimization step: 2550. Total energy = 7998.8081 kcal/mol (7995.0090 without restraints) Performing minimization step: 2551. Total energy = 7998.8068 kcal/mol (7995.0077 without restraints) Performing minimization step: 2552. Total energy = 7998.8055 kcal/mol (7995.0065 without restraints) Performing minimization step: 2553. Total energy = 7998.8042 kcal/mol (7995.0052 without restraints) Performing minimization step: 2554. Total energy = 7998.8030 kcal/mol (7995.0039 without restraints) Performing minimization step: 2555. Total energy = 7998.8017 kcal/mol (7995.0027 without restraints) Performing minimization step: 2556. Total energy = 7998.8005 kcal/mol (7995.0014 without restraints) Performing minimization step: 2557. Total energy = 7998.7992 kcal/mol (7995.0002 without restraints) Performing minimization step: 2558. Total energy = 7998.7980 kcal/mol (7994.9989 without restraints) Performing minimization step: 2559. Total energy = 7998.7967 kcal/mol (7994.9977 without restraints) Performing minimization step: 2560. Total energy = 7998.7955 kcal/mol (7994.9965 without restraints) Performing minimization step: 2561. Total energy = 7998.7942 kcal/mol (7994.9952 without restraints) Performing minimization step: 2562. Total energy = 7998.7930 kcal/mol (7994.9940 without restraints) Performing minimization step: 2563. Total energy = 7998.7917 kcal/mol (7994.9927 without restraints) Performing minimization step: 2564. Total energy = 7998.7905 kcal/mol (7994.9915 without restraints) Performing minimization step: 2565. Total energy = 7998.7893 kcal/mol (7994.9903 without restraints) Performing minimization step: 2566. Total energy = 7998.7881 kcal/mol (7994.9891 without restraints) Performing minimization step: 2567. Total energy = 7998.7868 kcal/mol (7994.9878 without restraints) Performing minimization step: 2568. Total energy = 7998.7856 kcal/mol (7994.9866 without restraints) Performing minimization step: 2569. Total energy = 7998.7844 kcal/mol (7994.9854 without restraints) Performing minimization step: 2570. Total energy = 7998.7831 kcal/mol (7994.9839 without restraints) Performing minimization step: 2571. Total energy = 7998.7820 kcal/mol (7994.9829 without restraints) Performing minimization step: 2572. Total energy = 7998.7806 kcal/mol (7994.9816 without restraints) Performing minimization step: 2573. Total energy = 7998.7793 kcal/mol (7994.9802 without restraints) Performing minimization step: 2574. Total energy = 7998.7782 kcal/mol (7994.9790 without restraints) Performing minimization step: 2575. Total energy = 7998.7769 kcal/mol (7994.9778 without restraints) Performing minimization step: 2576. Total energy = 7998.7758 kcal/mol (7994.9766 without restraints) Performing minimization step: 2577. Total energy = 7998.7745 kcal/mol (7994.9754 without restraints) Performing minimization step: 2578. Total energy = 7998.7734 kcal/mol (7994.9742 without restraints) Performing minimization step: 2579. Total energy = 7998.7722 kcal/mol (7994.9730 without restraints) Performing minimization step: 2580. Total energy = 7998.7710 kcal/mol (7994.9719 without restraints) Performing minimization step: 2581. Total energy = 7998.7698 kcal/mol (7994.9707 without restraints) Performing minimization step: 2582. Total energy = 7998.7686 kcal/mol (7994.9695 without restraints) Performing minimization step: 2583. Total energy = 7998.7674 kcal/mol (7994.9683 without restraints) Performing minimization step: 2584. Total energy = 7998.7663 kcal/mol (7994.9672 without restraints) Performing minimization step: 2585. Total energy = 7998.7651 kcal/mol (7994.9660 without restraints) Performing minimization step: 2586. Total energy = 7998.7640 kcal/mol (7994.9648 without restraints) Performing minimization step: 2587. Total energy = 7998.7628 kcal/mol (7994.9637 without restraints) Performing minimization step: 2588. Total energy = 7998.7616 kcal/mol (7994.9625 without restraints) Performing minimization step: 2589. Total energy = 7998.7605 kcal/mol (7994.9613 without restraints) Performing minimization step: 2590. Total energy = 7998.7593 kcal/mol (7994.9602 without restraints) Performing minimization step: 2591. Total energy = 7998.7582 kcal/mol (7994.9590 without restraints) Performing minimization step: 2592. Total energy = 7998.7570 kcal/mol (7994.9579 without restraints) Performing minimization step: 2593. Total energy = 7998.7559 kcal/mol (7994.9567 without restraints) Performing minimization step: 2594. Total energy = 7998.7547 kcal/mol (7994.9556 without restraints) Performing minimization step: 2595. Total energy = 7998.7536 kcal/mol (7994.9545 without restraints) Performing minimization step: 2596. Total energy = 7998.7525 kcal/mol (7994.9533 without restraints) Performing minimization step: 2597. Total energy = 7998.7513 kcal/mol (7994.9522 without restraints) Performing minimization step: 2598. Total energy = 7998.7502 kcal/mol (7994.9511 without restraints) Performing minimization step: 2599. Total energy = 7998.7490 kcal/mol (7994.9499 without restraints) Performing minimization step: 2600. Total energy = 7998.7479 kcal/mol (7994.9488 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 7998.7468 kcal/mol (7994.9477 without restraints) Performing minimization step: 2602. Total energy = 7998.7457 kcal/mol (7994.9466 without restraints) Performing minimization step: 2603. Total energy = 7998.7445 kcal/mol (7994.9454 without restraints) Performing minimization step: 2604. Total energy = 7998.7434 kcal/mol (7994.9444 without restraints) Performing minimization step: 2605. Total energy = 7998.7423 kcal/mol (7994.9432 without restraints) Performing minimization step: 2606. Total energy = 7998.7412 kcal/mol (7994.9421 without restraints) Performing minimization step: 2607. Total energy = 7998.7401 kcal/mol (7994.9410 without restraints) Performing minimization step: 2608. Total energy = 7998.7390 kcal/mol (7994.9399 without restraints) Performing minimization step: 2609. Total energy = 7998.7379 kcal/mol (7994.9388 without restraints) Performing minimization step: 2610. Total energy = 7998.7368 kcal/mol (7994.9377 without restraints) Performing minimization step: 2611. Total energy = 7998.7357 kcal/mol (7994.9366 without restraints) Performing minimization step: 2612. Total energy = 7998.7346 kcal/mol (7994.9355 without restraints) Performing minimization step: 2613. Total energy = 7998.7335 kcal/mol (7994.9344 without restraints) Performing minimization step: 2614. Total energy = 7998.7324 kcal/mol (7994.9334 without restraints) Performing minimization step: 2615. Total energy = 7998.7313 kcal/mol (7994.9322 without restraints) Performing minimization step: 2616. Total energy = 7998.7303 kcal/mol (7994.9312 without restraints) Performing minimization step: 2617. Total energy = 7998.7292 kcal/mol (7994.9301 without restraints) Performing minimization step: 2618. Total energy = 7998.7281 kcal/mol (7994.9290 without restraints) Performing minimization step: 2619. Total energy = 7998.7270 kcal/mol (7994.9279 without restraints) Performing minimization step: 2620. Total energy = 7998.7259 kcal/mol (7994.9269 without restraints) Performing minimization step: 2621. Total energy = 7998.7248 kcal/mol (7994.9258 without restraints) Performing minimization step: 2622. Total energy = 7998.7238 kcal/mol (7994.9247 without restraints) Performing minimization step: 2623. Total energy = 7998.7227 kcal/mol (7994.9236 without restraints) Performing minimization step: 2624. Total energy = 7998.7217 kcal/mol (7994.9226 without restraints) Performing minimization step: 2625. Total energy = 7998.7206 kcal/mol (7994.9215 without restraints) Performing minimization step: 2626. Total energy = 7998.7195 kcal/mol (7994.9205 without restraints) Performing minimization step: 2627. Total energy = 7998.7185 kcal/mol (7994.9194 without restraints) Performing minimization step: 2628. Total energy = 7998.7174 kcal/mol (7994.9184 without restraints) Performing minimization step: 2629. Total energy = 7998.7164 kcal/mol (7994.9173 without restraints) Performing minimization step: 2630. Total energy = 7998.7153 kcal/mol (7994.9162 without restraints) Performing minimization step: 2631. Total energy = 7998.7143 kcal/mol (7994.9152 without restraints) Performing minimization step: 2632. Total energy = 7998.7132 kcal/mol (7994.9141 without restraints) Performing minimization step: 2633. Total energy = 7998.7122 kcal/mol (7994.9131 without restraints) Performing minimization step: 2634. Total energy = 7998.7111 kcal/mol (7994.9121 without restraints) Performing minimization step: 2635. Total energy = 7998.7101 kcal/mol (7994.9110 without restraints) Performing minimization step: 2636. Total energy = 7998.7090 kcal/mol (7994.9100 without restraints) Performing minimization step: 2637. Total energy = 7998.7080 kcal/mol (7994.9089 without restraints) Performing minimization step: 2638. Total energy = 7998.7070 kcal/mol (7994.9079 without restraints) Performing minimization step: 2639. Total energy = 7998.7059 kcal/mol (7994.9069 without restraints) Performing minimization step: 2640. Total energy = 7998.7049 kcal/mol (7994.9059 without restraints) Performing minimization step: 2641. Total energy = 7998.7039 kcal/mol (7994.9048 without restraints) Performing minimization step: 2642. Total energy = 7998.7029 kcal/mol (7994.9038 without restraints) Performing minimization step: 2643. Total energy = 7998.7018 kcal/mol (7994.9028 without restraints) Performing minimization step: 2644. Total energy = 7998.7008 kcal/mol (7994.9018 without restraints) Performing minimization step: 2645. Total energy = 7998.6998 kcal/mol (7994.9008 without restraints) Performing minimization step: 2646. Total energy = 7998.6988 kcal/mol (7994.8998 without restraints) Performing minimization step: 2647. Total energy = 7998.6978 kcal/mol (7994.8987 without restraints) Performing minimization step: 2648. Total energy = 7998.6968 kcal/mol (7994.8978 without restraints) Performing minimization step: 2649. Total energy = 7998.6958 kcal/mol (7994.8967 without restraints) Performing minimization step: 2650. Total energy = 7998.6948 kcal/mol (7994.8958 without restraints) Performing minimization step: 2651. Total energy = 7998.6938 kcal/mol (7994.8947 without restraints) Performing minimization step: 2652. Total energy = 7998.6928 kcal/mol (7994.8938 without restraints) Performing minimization step: 2653. Total energy = 7998.6918 kcal/mol (7994.8927 without restraints) Performing minimization step: 2654. Total energy = 7998.6908 kcal/mol (7994.8918 without restraints) Performing minimization step: 2655. Total energy = 7998.6898 kcal/mol (7994.8908 without restraints) Performing minimization step: 2656. Total energy = 7998.6888 kcal/mol (7994.8898 without restraints) Performing minimization step: 2657. Total energy = 7998.6878 kcal/mol (7994.8888 without restraints) Performing minimization step: 2658. Total energy = 7998.6868 kcal/mol (7994.8878 without restraints) Performing minimization step: 2659. Total energy = 7998.6858 kcal/mol (7994.8868 without restraints) Performing minimization step: 2660. Total energy = 7998.6849 kcal/mol (7994.8859 without restraints) Performing minimization step: 2661. Total energy = 7998.6839 kcal/mol (7994.8849 without restraints) Performing minimization step: 2662. Total energy = 7998.6829 kcal/mol (7994.8839 without restraints) Performing minimization step: 2663. Total energy = 7998.6819 kcal/mol (7994.8829 without restraints) Performing minimization step: 2664. Total energy = 7998.6810 kcal/mol (7994.8820 without restraints) Performing minimization step: 2665. Total energy = 7998.6800 kcal/mol (7994.8810 without restraints) Performing minimization step: 2666. Total energy = 7998.6790 kcal/mol (7994.8800 without restraints) Performing minimization step: 2667. Total energy = 7998.6781 kcal/mol (7994.8790 without restraints) Performing minimization step: 2668. Total energy = 7998.6770 kcal/mol (7994.8778 without restraints) Performing minimization step: 2669. Total energy = 7998.6750 kcal/mol (7994.8760 without restraints) Performing minimization step: 2670. Total energy = 7998.6720 kcal/mol (7994.8733 without restraints) Performing minimization step: 2671. Total energy = 7998.6709 kcal/mol (7994.8719 without restraints) Performing minimization step: 2672. Total energy = 7998.6699 kcal/mol (7994.8708 without restraints) Performing minimization step: 2673. Total energy = 7998.6687 kcal/mol (7994.8697 without restraints) Performing minimization step: 2674. Total energy = 7998.6666 kcal/mol (7994.8676 without restraints) Performing minimization step: 2675. Total energy = 7998.6657 kcal/mol (7994.8666 without restraints) Performing minimization step: 2676. Total energy = 7998.6648 kcal/mol (7994.8658 without restraints) Performing minimization step: 2677. Total energy = 7998.6633 kcal/mol (7994.8643 without restraints) Performing minimization step: 2678. Total energy = 7998.6623 kcal/mol (7994.8632 without restraints) Performing minimization step: 2679. Total energy = 7998.6613 kcal/mol (7994.8623 without restraints) Performing minimization step: 2680. Total energy = 7998.6593 kcal/mol (7994.8604 without restraints) Performing minimization step: 2681. Total energy = 7998.6583 kcal/mol (7994.8593 without restraints) Performing minimization step: 2682. Total energy = 7998.6573 kcal/mol (7994.8581 without restraints) Performing minimization step: 2683. Total energy = 7998.6559 kcal/mol (7994.8569 without restraints) Performing minimization step: 2684. Total energy = 7998.6534 kcal/mol (7994.8544 without restraints) Performing minimization step: 2685. Total energy = 7998.6524 kcal/mol (7994.8532 without restraints) Performing minimization step: 2686. Total energy = 7998.6511 kcal/mol (7994.8521 without restraints) Performing minimization step: 2687. Total energy = 7998.6484 kcal/mol (7994.8495 without restraints) Performing minimization step: 2688. Total energy = 7998.6475 kcal/mol (7994.8483 without restraints) Performing minimization step: 2689. Total energy = 7998.6462 kcal/mol (7994.8472 without restraints) Performing minimization step: 2690. Total energy = 7998.6442 kcal/mol (7994.8452 without restraints) Performing minimization step: 2691. Total energy = 7998.6433 kcal/mol (7994.8442 without restraints) Performing minimization step: 2692. Total energy = 7998.6425 kcal/mol (7994.8434 without restraints) Performing minimization step: 2693. Total energy = 7998.6412 kcal/mol (7994.8420 without restraints) Performing minimization step: 2694. Total energy = 7998.6394 kcal/mol (7994.8403 without restraints) Performing minimization step: 2695. Total energy = 7998.6379 kcal/mol (7994.8389 without restraints) Performing minimization step: 2696. Total energy = 7998.6369 kcal/mol (7994.8378 without restraints) Performing minimization step: 2697. Total energy = 7998.6359 kcal/mol (7994.8368 without restraints) Performing minimization step: 2698. Total energy = 7998.6345 kcal/mol (7994.8355 without restraints) Performing minimization step: 2699. Total energy = 7998.6335 kcal/mol (7994.8344 without restraints) Performing minimization step: 2700. Total energy = 7998.6325 kcal/mol (7994.8336 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 7998.6306 kcal/mol (7994.8316 without restraints) Performing minimization step: 2702. Total energy = 7998.6299 kcal/mol (7994.8308 without restraints) Performing minimization step: 2703. Total energy = 7998.6290 kcal/mol (7994.8299 without restraints) Performing minimization step: 2704. Total energy = 7998.6281 kcal/mol (7994.8291 without restraints) Performing minimization step: 2705. Total energy = 7998.6273 kcal/mol (7994.8282 without restraints) Performing minimization step: 2706. Total energy = 7998.6264 kcal/mol (7994.8274 without restraints) Performing minimization step: 2707. Total energy = 7998.6256 kcal/mol (7994.8265 without restraints) Performing minimization step: 2708. Total energy = 7998.6247 kcal/mol (7994.8257 without restraints) Performing minimization step: 2709. Total energy = 7998.6239 kcal/mol (7994.8248 without restraints) Performing minimization step: 2710. Total energy = 7998.6230 kcal/mol (7994.8240 without restraints) Performing minimization step: 2711. Total energy = 7998.6222 kcal/mol (7994.8231 without restraints) Performing minimization step: 2712. Total energy = 7998.6213 kcal/mol (7994.8223 without restraints) Performing minimization step: 2713. Total energy = 7998.6205 kcal/mol (7994.8214 without restraints) Performing minimization step: 2714. Total energy = 7998.6196 kcal/mol (7994.8206 without restraints) Performing minimization step: 2715. Total energy = 7998.6188 kcal/mol (7994.8198 without restraints) Performing minimization step: 2716. Total energy = 7998.6180 kcal/mol (7994.8189 without restraints) Performing minimization step: 2717. Total energy = 7998.6171 kcal/mol (7994.8181 without restraints) Performing minimization step: 2718. Total energy = 7998.6163 kcal/mol (7994.8173 without restraints) Performing minimization step: 2719. Total energy = 7998.6155 kcal/mol (7994.8164 without restraints) Performing minimization step: 2720. Total energy = 7998.6146 kcal/mol (7994.8156 without restraints) Performing minimization step: 2721. Total energy = 7998.6138 kcal/mol (7994.8148 without restraints) Performing minimization step: 2722. Total energy = 7998.6130 kcal/mol (7994.8140 without restraints) Performing minimization step: 2723. Total energy = 7998.6121 kcal/mol (7994.8131 without restraints) Performing minimization step: 2724. Total energy = 7998.6113 kcal/mol (7994.8123 without restraints) Performing minimization step: 2725. Total energy = 7998.6105 kcal/mol (7994.8115 without restraints) Performing minimization step: 2726. Total energy = 7998.6097 kcal/mol (7994.8107 without restraints) Performing minimization step: 2727. Total energy = 7998.6089 kcal/mol (7994.8098 without restraints) Performing minimization step: 2728. Total energy = 7998.6081 kcal/mol (7994.8090 without restraints) Performing minimization step: 2729. Total energy = 7998.6072 kcal/mol (7994.8082 without restraints) Performing minimization step: 2730. Total energy = 7998.6064 kcal/mol (7994.8074 without restraints) Performing minimization step: 2731. Total energy = 7998.6056 kcal/mol (7994.8066 without restraints) Performing minimization step: 2732. Total energy = 7998.6048 kcal/mol (7994.8058 without restraints) Performing minimization step: 2733. Total energy = 7998.6040 kcal/mol (7994.8050 without restraints) Performing minimization step: 2734. Total energy = 7998.6032 kcal/mol (7994.8042 without restraints) Performing minimization step: 2735. Total energy = 7998.6024 kcal/mol (7994.8034 without restraints) Performing minimization step: 2736. Total energy = 7998.6016 kcal/mol (7994.8026 without restraints) Performing minimization step: 2737. Total energy = 7998.6008 kcal/mol (7994.8018 without restraints) Performing minimization step: 2738. Total energy = 7998.6000 kcal/mol (7994.8010 without restraints) Performing minimization step: 2739. Total energy = 7998.5992 kcal/mol (7994.8002 without restraints) Performing minimization step: 2740. Total energy = 7998.5984 kcal/mol (7994.7994 without restraints) Performing minimization step: 2741. Total energy = 7998.5976 kcal/mol (7994.7986 without restraints) Performing minimization step: 2742. Total energy = 7998.5968 kcal/mol (7994.7978 without restraints) Performing minimization step: 2743. Total energy = 7998.5960 kcal/mol (7994.7970 without restraints) Performing minimization step: 2744. Total energy = 7998.5952 kcal/mol (7994.7962 without restraints) Performing minimization step: 2745. Total energy = 7998.5944 kcal/mol (7994.7954 without restraints) Performing minimization step: 2746. Total energy = 7998.5936 kcal/mol (7994.7946 without restraints) Performing minimization step: 2747. Total energy = 7998.5928 kcal/mol (7994.7938 without restraints) Performing minimization step: 2748. Total energy = 7998.5921 kcal/mol (7994.7931 without restraints) Performing minimization step: 2749. Total energy = 7998.5913 kcal/mol (7994.7923 without restraints) Performing minimization step: 2750. Total energy = 7998.5905 kcal/mol (7994.7915 without restraints) Performing minimization step: 2751. Total energy = 7998.5897 kcal/mol (7994.7907 without restraints) Performing minimization step: 2752. Total energy = 7998.5889 kcal/mol (7994.7900 without restraints) Performing minimization step: 2753. Total energy = 7998.5881 kcal/mol (7994.7892 without restraints) Performing minimization step: 2754. Total energy = 7998.5874 kcal/mol (7994.7884 without restraints) Performing minimization step: 2755. Total energy = 7998.5866 kcal/mol (7994.7876 without restraints) Performing minimization step: 2756. Total energy = 7998.5858 kcal/mol (7994.7869 without restraints) Performing minimization step: 2757. Total energy = 7998.5851 kcal/mol (7994.7861 without restraints) Performing minimization step: 2758. Total energy = 7998.5843 kcal/mol (7994.7853 without restraints) Performing minimization step: 2759. Total energy = 7998.5835 kcal/mol (7994.7845 without restraints) Performing minimization step: 2760. Total energy = 7998.5828 kcal/mol (7994.7838 without restraints) Performing minimization step: 2761. Total energy = 7998.5820 kcal/mol (7994.7830 without restraints) Performing minimization step: 2762. Total energy = 7998.5812 kcal/mol (7994.7823 without restraints) Performing minimization step: 2763. Total energy = 7998.5805 kcal/mol (7994.7815 without restraints) Performing minimization step: 2764. Total energy = 7998.5797 kcal/mol (7994.7808 without restraints) Performing minimization step: 2765. Total energy = 7998.5789 kcal/mol (7994.7800 without restraints) Performing minimization step: 2766. Total energy = 7998.5782 kcal/mol (7994.7793 without restraints) Performing minimization step: 2767. Total energy = 7998.5774 kcal/mol (7994.7785 without restraints) Performing minimization step: 2768. Total energy = 7998.5767 kcal/mol (7994.7777 without restraints) Performing minimization step: 2769. Total energy = 7998.5759 kcal/mol (7994.7770 without restraints) Performing minimization step: 2770. Total energy = 7998.5752 kcal/mol (7994.7762 without restraints) Performing minimization step: 2771. Total energy = 7998.5744 kcal/mol (7994.7755 without restraints) Performing minimization step: 2772. Total energy = 7998.5737 kcal/mol (7994.7747 without restraints) Performing minimization step: 2773. Total energy = 7998.5729 kcal/mol (7994.7740 without restraints) Performing minimization step: 2774. Total energy = 7998.5722 kcal/mol (7994.7733 without restraints) Performing minimization step: 2775. Total energy = 7998.5714 kcal/mol (7994.7725 without restraints) Performing minimization step: 2776. Total energy = 7998.5707 kcal/mol (7994.7718 without restraints) Performing minimization step: 2777. Total energy = 7998.5700 kcal/mol (7994.7710 without restraints) Performing minimization step: 2778. Total energy = 7998.5692 kcal/mol (7994.7703 without restraints) Performing minimization step: 2779. Total energy = 7998.5685 kcal/mol (7994.7695 without restraints) Performing minimization step: 2780. Total energy = 7998.5678 kcal/mol (7994.7688 without restraints) Performing minimization step: 2781. Total energy = 7998.5670 kcal/mol (7994.7681 without restraints) Performing minimization step: 2782. Total energy = 7998.5661 kcal/mol (7994.7670 without restraints) Performing minimization step: 2783. Total energy = 7998.5655 kcal/mol (7994.7665 without restraints) Performing minimization step: 2784. Total energy = 7998.5647 kcal/mol (7994.7657 without restraints) Performing minimization step: 2785. Total energy = 7998.5638 kcal/mol (7994.7647 without restraints) Performing minimization step: 2786. Total energy = 7998.5631 kcal/mol (7994.7640 without restraints) Performing minimization step: 2787. Total energy = 7998.5624 kcal/mol (7994.7633 without restraints) Performing minimization step: 2788. Total energy = 7998.5617 kcal/mol (7994.7626 without restraints) Performing minimization step: 2789. Total energy = 7998.5609 kcal/mol (7994.7618 without restraints) Performing minimization step: 2790. Total energy = 7998.5602 kcal/mol (7994.7611 without restraints) Performing minimization step: 2791. Total energy = 7998.5595 kcal/mol (7994.7604 without restraints) Performing minimization step: 2792. Total energy = 7998.5588 kcal/mol (7994.7597 without restraints) Performing minimization step: 2793. Total energy = 7998.5580 kcal/mol (7994.7590 without restraints) Performing minimization step: 2794. Total energy = 7998.5573 kcal/mol (7994.7583 without restraints) Performing minimization step: 2795. Total energy = 7998.5566 kcal/mol (7994.7575 without restraints) Performing minimization step: 2796. Total energy = 7998.5559 kcal/mol (7994.7568 without restraints) Performing minimization step: 2797. Total energy = 7998.5552 kcal/mol (7994.7561 without restraints) Performing minimization step: 2798. Total energy = 7998.5545 kcal/mol (7994.7554 without restraints) Performing minimization step: 2799. Total energy = 7998.5538 kcal/mol (7994.7547 without restraints) Performing minimization step: 2800. Total energy = 7998.5531 kcal/mol (7994.7540 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 7998.5523 kcal/mol (7994.7533 without restraints) Performing minimization step: 2802. Total energy = 7998.5516 kcal/mol (7994.7526 without restraints) Performing minimization step: 2803. Total energy = 7998.5509 kcal/mol (7994.7519 without restraints) Performing minimization step: 2804. Total energy = 7998.5502 kcal/mol (7994.7512 without restraints) Performing minimization step: 2805. Total energy = 7998.5495 kcal/mol (7994.7505 without restraints) Performing minimization step: 2806. Total energy = 7998.5488 kcal/mol (7994.7498 without restraints) Performing minimization step: 2807. Total energy = 7998.5481 kcal/mol (7994.7491 without restraints) Performing minimization step: 2808. Total energy = 7998.5474 kcal/mol (7994.7484 without restraints) Performing minimization step: 2809. Total energy = 7998.5467 kcal/mol (7994.7477 without restraints) Performing minimization step: 2810. Total energy = 7998.5460 kcal/mol (7994.7470 without restraints) Performing minimization step: 2811. Total energy = 7998.5453 kcal/mol (7994.7463 without restraints) Performing minimization step: 2812. Total energy = 7998.5446 kcal/mol (7994.7456 without restraints) Performing minimization step: 2813. Total energy = 7998.5439 kcal/mol (7994.7449 without restraints) Performing minimization step: 2814. Total energy = 7998.5433 kcal/mol (7994.7442 without restraints) Performing minimization step: 2815. Total energy = 7998.5426 kcal/mol (7994.7435 without restraints) Performing minimization step: 2816. Total energy = 7998.5419 kcal/mol (7994.7428 without restraints) Performing minimization step: 2817. Total energy = 7998.5412 kcal/mol (7994.7421 without restraints) Performing minimization step: 2818. Total energy = 7998.5405 kcal/mol (7994.7415 without restraints) Performing minimization step: 2819. Total energy = 7998.5398 kcal/mol (7994.7408 without restraints) Performing minimization step: 2820. Total energy = 7998.5391 kcal/mol (7994.7401 without restraints) Performing minimization step: 2821. Total energy = 7998.5385 kcal/mol (7994.7394 without restraints) Performing minimization step: 2822. Total energy = 7998.5378 kcal/mol (7994.7387 without restraints) Performing minimization step: 2823. Total energy = 7998.5371 kcal/mol (7994.7380 without restraints) Performing minimization step: 2824. Total energy = 7998.5364 kcal/mol (7994.7374 without restraints) Performing minimization step: 2825. Total energy = 7998.5357 kcal/mol (7994.7367 without restraints) Performing minimization step: 2826. Total energy = 7998.5351 kcal/mol (7994.7360 without restraints) Performing minimization step: 2827. Total energy = 7998.5344 kcal/mol (7994.7353 without restraints) Performing minimization step: 2828. Total energy = 7998.5337 kcal/mol (7994.7347 without restraints) Performing minimization step: 2829. Total energy = 7998.5330 kcal/mol (7994.7340 without restraints) Performing minimization step: 2830. Total energy = 7998.5324 kcal/mol (7994.7334 without restraints) Performing minimization step: 2831. Total energy = 7998.5317 kcal/mol (7994.7327 without restraints) Performing minimization step: 2832. Total energy = 7998.5311 kcal/mol (7994.7320 without restraints) Performing minimization step: 2833. Total energy = 7998.5304 kcal/mol (7994.7313 without restraints) Performing minimization step: 2834. Total energy = 7998.5297 kcal/mol (7994.7307 without restraints) Performing minimization step: 2835. Total energy = 7998.5290 kcal/mol (7994.7300 without restraints) Performing minimization step: 2836. Total energy = 7998.5284 kcal/mol (7994.7294 without restraints) Performing minimization step: 2837. Total energy = 7998.5277 kcal/mol (7994.7287 without restraints) Performing minimization step: 2838. Total energy = 7998.5271 kcal/mol (7994.7280 without restraints) Performing minimization step: 2839. Total energy = 7998.5264 kcal/mol (7994.7274 without restraints) Performing minimization step: 2840. Total energy = 7998.5258 kcal/mol (7994.7267 without restraints) Performing minimization step: 2841. Total energy = 7998.5251 kcal/mol (7994.7261 without restraints) Performing minimization step: 2842. Total energy = 7998.5244 kcal/mol (7994.7254 without restraints) Performing minimization step: 2843. Total energy = 7998.5238 kcal/mol (7994.7247 without restraints) Performing minimization step: 2844. Total energy = 7998.5231 kcal/mol (7994.7241 without restraints) Performing minimization step: 2845. Total energy = 7998.5225 kcal/mol (7994.7234 without restraints) Performing minimization step: 2846. Total energy = 7998.5218 kcal/mol (7994.7226 without restraints) Performing minimization step: 2847. Total energy = 7998.5206 kcal/mol (7994.7215 without restraints) Performing minimization step: 2848. Total energy = 7998.5196 kcal/mol (7994.7205 without restraints) Performing minimization step: 2849. Total energy = 7998.5190 kcal/mol (7994.7200 without restraints) Performing minimization step: 2850. Total energy = 7998.5183 kcal/mol (7994.7193 without restraints) Performing minimization step: 2851. Total energy = 7998.5176 kcal/mol (7994.7185 without restraints) Performing minimization step: 2852. Total energy = 7998.5167 kcal/mol (7994.7177 without restraints) Performing minimization step: 2853. Total energy = 7998.5152 kcal/mol (7994.7163 without restraints) Performing minimization step: 2854. Total energy = 7998.5145 kcal/mol (7994.7154 without restraints) Performing minimization step: 2855. Total energy = 7998.5134 kcal/mol (7994.7143 without restraints) Performing minimization step: 2856. Total energy = 7998.5124 kcal/mol (7994.7133 without restraints) Performing minimization step: 2857. Total energy = 7998.5117 kcal/mol (7994.7126 without restraints) Performing minimization step: 2858. Total energy = 7998.5110 kcal/mol (7994.7119 without restraints) Performing minimization step: 2859. Total energy = 7998.5103 kcal/mol (7994.7112 without restraints) Performing minimization step: 2860. Total energy = 7998.5096 kcal/mol (7994.7106 without restraints) Performing minimization step: 2861. Total energy = 7998.5085 kcal/mol (7994.7096 without restraints) Performing minimization step: 2862. Total energy = 7998.5078 kcal/mol (7994.7088 without restraints) Performing minimization step: 2863. Total energy = 7998.5071 kcal/mol (7994.7080 without restraints) Performing minimization step: 2864. Total energy = 7998.5064 kcal/mol (7994.7073 without restraints) Performing minimization step: 2865. Total energy = 7998.5052 kcal/mol (7994.7064 without restraints) Performing minimization step: 2866. Total energy = 7998.5045 kcal/mol (7994.7055 without restraints) Performing minimization step: 2867. Total energy = 7998.5039 kcal/mol (7994.7048 without restraints) Performing minimization step: 2868. Total energy = 7998.5032 kcal/mol (7994.7042 without restraints) Performing minimization step: 2869. Total energy = 7998.5021 kcal/mol (7994.7032 without restraints) Performing minimization step: 2870. Total energy = 7998.5014 kcal/mol (7994.7024 without restraints) Performing minimization step: 2871. Total energy = 7998.5007 kcal/mol (7994.7016 without restraints) Performing minimization step: 2872. Total energy = 7998.5000 kcal/mol (7994.7010 without restraints) Performing minimization step: 2873. Total energy = 7998.4989 kcal/mol (7994.7000 without restraints) Performing minimization step: 2874. Total energy = 7998.4982 kcal/mol (7994.6992 without restraints) Performing minimization step: 2875. Total energy = 7998.4975 kcal/mol (7994.6985 without restraints) Performing minimization step: 2876. Total energy = 7998.4968 kcal/mol (7994.6977 without restraints) Performing minimization step: 2877. Total energy = 7998.4961 kcal/mol (7994.6970 without restraints) Performing minimization step: 2878. Total energy = 7998.4955 kcal/mol (7994.6965 without restraints) Performing minimization step: 2879. Total energy = 7998.4945 kcal/mol (7994.6955 without restraints) Performing minimization step: 2880. Total energy = 7998.4939 kcal/mol (7994.6948 without restraints) Performing minimization step: 2881. Total energy = 7998.4933 kcal/mol (7994.6943 without restraints) Performing minimization step: 2882. Total energy = 7998.4923 kcal/mol (7994.6933 without restraints) Performing minimization step: 2883. Total energy = 7998.4917 kcal/mol (7994.6926 without restraints) Performing minimization step: 2884. Total energy = 7998.4911 kcal/mol (7994.6921 without restraints) Performing minimization step: 2885. Total energy = 7998.4901 kcal/mol (7994.6911 without restraints) Performing minimization step: 2886. Total energy = 7998.4895 kcal/mol (7994.6904 without restraints) Performing minimization step: 2887. Total energy = 7998.4889 kcal/mol (7994.6899 without restraints) Performing minimization step: 2888. Total energy = 7998.4879 kcal/mol (7994.6889 without restraints) Performing minimization step: 2889. Total energy = 7998.4873 kcal/mol (7994.6883 without restraints) Performing minimization step: 2890. Total energy = 7998.4867 kcal/mol (7994.6877 without restraints) Performing minimization step: 2891. Total energy = 7998.4859 kcal/mol (7994.6869 without restraints) Performing minimization step: 2892. Total energy = 7998.4852 kcal/mol (7994.6862 without restraints) Performing minimization step: 2893. Total energy = 7998.4839 kcal/mol (7994.6849 without restraints) Performing minimization step: 2894. Total energy = 7998.4834 kcal/mol (7994.6843 without restraints) Performing minimization step: 2895. Total energy = 7998.4828 kcal/mol (7994.6838 without restraints) Performing minimization step: 2896. Total energy = 7998.4820 kcal/mol (7994.6829 without restraints) Performing minimization step: 2897. Total energy = 7998.4812 kcal/mol (7994.6822 without restraints) Performing minimization step: 2898. Total energy = 7998.4797 kcal/mol (7994.6809 without restraints) Performing minimization step: 2899. Total energy = 7998.4790 kcal/mol (7994.6800 without restraints) Performing minimization step: 2900. Total energy = 7998.4783 kcal/mol (7994.6793 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 7998.4770 kcal/mol (7994.6780 without restraints) Performing minimization step: 2902. Total energy = 7998.4765 kcal/mol (7994.6774 without restraints) Performing minimization step: 2903. Total energy = 7998.4760 kcal/mol (7994.6769 without restraints) Performing minimization step: 2904. Total energy = 7998.4751 kcal/mol (7994.6761 without restraints) Performing minimization step: 2905. Total energy = 7998.4743 kcal/mol (7994.6752 without restraints) Performing minimization step: 2906. Total energy = 7998.4731 kcal/mol (7994.6741 without restraints) Performing minimization step: 2907. Total energy = 7998.4725 kcal/mol (7994.6735 without restraints) Performing minimization step: 2908. Total energy = 7998.4720 kcal/mol (7994.6730 without restraints) Performing minimization step: 2909. Total energy = 7998.4712 kcal/mol (7994.6721 without restraints) Performing minimization step: 2910. Total energy = 7998.4704 kcal/mol (7994.6714 without restraints) Performing minimization step: 2911. Total energy = 7998.4692 kcal/mol (7994.6701 without restraints) Performing minimization step: 2912. Total energy = 7998.4686 kcal/mol (7994.6696 without restraints) Performing minimization step: 2913. Total energy = 7998.4681 kcal/mol (7994.6690 without restraints) Performing minimization step: 2914. Total energy = 7998.4675 kcal/mol (7994.6684 without restraints) Performing minimization step: 2915. Total energy = 7998.4670 kcal/mol (7994.6679 without restraints) Performing minimization step: 2916. Total energy = 7998.4664 kcal/mol (7994.6673 without restraints) Performing minimization step: 2917. Total energy = 7998.4658 kcal/mol (7994.6668 without restraints) Performing minimization step: 2918. Total energy = 7998.4653 kcal/mol (7994.6663 without restraints) Performing minimization step: 2919. Total energy = 7998.4648 kcal/mol (7994.6657 without restraints) Performing minimization step: 2920. Total energy = 7998.4642 kcal/mol (7994.6652 without restraints) Performing minimization step: 2921. Total energy = 7998.4637 kcal/mol (7994.6646 without restraints) Performing minimization step: 2922. Total energy = 7998.4631 kcal/mol (7994.6641 without restraints) Performing minimization step: 2923. Total energy = 7998.4626 kcal/mol (7994.6635 without restraints) Performing minimization step: 2924. Total energy = 7998.4621 kcal/mol (7994.6630 without restraints) Performing minimization step: 2925. Total energy = 7998.4615 kcal/mol (7994.6624 without restraints) Performing minimization step: 2926. Total energy = 7998.4610 kcal/mol (7994.6619 without restraints) Performing minimization step: 2927. Total energy = 7998.4604 kcal/mol (7994.6613 without restraints) Performing minimization step: 2928. Total energy = 7998.4599 kcal/mol (7994.6608 without restraints) Performing minimization step: 2929. Total energy = 7998.4593 kcal/mol (7994.6603 without restraints) Performing minimization step: 2930. Total energy = 7998.4588 kcal/mol (7994.6597 without restraints) Performing minimization step: 2931. Total energy = 7998.4583 kcal/mol (7994.6592 without restraints) Performing minimization step: 2932. Total energy = 7998.4577 kcal/mol (7994.6587 without restraints) Performing minimization step: 2933. Total energy = 7998.4572 kcal/mol (7994.6581 without restraints) Performing minimization step: 2934. Total energy = 7998.4566 kcal/mol (7994.6576 without restraints) Performing minimization step: 2935. Total energy = 7998.4561 kcal/mol (7994.6570 without restraints) Performing minimization step: 2936. Total energy = 7998.4556 kcal/mol (7994.6565 without restraints) Performing minimization step: 2937. Total energy = 7998.4550 kcal/mol (7994.6560 without restraints) Performing minimization step: 2938. Total energy = 7998.4545 kcal/mol (7994.6554 without restraints) Performing minimization step: 2939. Total energy = 7998.4540 kcal/mol (7994.6549 without restraints) Performing minimization step: 2940. Total energy = 7998.4534 kcal/mol (7994.6544 without restraints) Performing minimization step: 2941. Total energy = 7998.4529 kcal/mol (7994.6538 without restraints) Performing minimization step: 2942. Total energy = 7998.4524 kcal/mol (7994.6533 without restraints) Performing minimization step: 2943. Total energy = 7998.4519 kcal/mol (7994.6528 without restraints) Performing minimization step: 2944. Total energy = 7998.4513 kcal/mol (7994.6523 without restraints) Performing minimization step: 2945. Total energy = 7998.4508 kcal/mol (7994.6517 without restraints) Performing minimization step: 2946. Total energy = 7998.4503 kcal/mol (7994.6512 without restraints) Performing minimization step: 2947. Total energy = 7998.4497 kcal/mol (7994.6507 without restraints) Performing minimization step: 2948. Total energy = 7998.4492 kcal/mol (7994.6502 without restraints) Performing minimization step: 2949. Total energy = 7998.4487 kcal/mol (7994.6496 without restraints) Performing minimization step: 2950. Total energy = 7998.4482 kcal/mol (7994.6491 without restraints) Performing minimization step: 2951. Total energy = 7998.4476 kcal/mol (7994.6486 without restraints) Performing minimization step: 2952. Total energy = 7998.4471 kcal/mol (7994.6481 without restraints) Performing minimization step: 2953. Total energy = 7998.4466 kcal/mol (7994.6476 without restraints) Performing minimization step: 2954. Total energy = 7998.4461 kcal/mol (7994.6470 without restraints) Performing minimization step: 2955. Total energy = 7998.4456 kcal/mol (7994.6465 without restraints) Performing minimization step: 2956. Total energy = 7998.4451 kcal/mol (7994.6460 without restraints) Performing minimization step: 2957. Total energy = 7998.4445 kcal/mol (7994.6455 without restraints) Performing minimization step: 2958. Total energy = 7998.4440 kcal/mol (7994.6450 without restraints) Performing minimization step: 2959. Total energy = 7998.4435 kcal/mol (7994.6445 without restraints) Performing minimization step: 2960. Total energy = 7998.4430 kcal/mol (7994.6440 without restraints) Performing minimization step: 2961. Total energy = 7998.4425 kcal/mol (7994.6434 without restraints) Performing minimization step: 2962. Total energy = 7998.4420 kcal/mol (7994.6429 without restraints) Performing minimization step: 2963. Total energy = 7998.4414 kcal/mol (7994.6424 without restraints) Performing minimization step: 2964. Total energy = 7998.4409 kcal/mol (7994.6419 without restraints) Performing minimization step: 2965. Total energy = 7998.4404 kcal/mol (7994.6414 without restraints) Performing minimization step: 2966. Total energy = 7998.4399 kcal/mol (7994.6409 without restraints) Performing minimization step: 2967. Total energy = 7998.4394 kcal/mol (7994.6404 without restraints) Performing minimization step: 2968. Total energy = 7998.4389 kcal/mol (7994.6399 without restraints) Performing minimization step: 2969. Total energy = 7998.4384 kcal/mol (7994.6394 without restraints) Performing minimization step: 2970. Total energy = 7998.4379 kcal/mol (7994.6389 without restraints) Performing minimization step: 2971. Total energy = 7998.4374 kcal/mol (7994.6384 without restraints) Performing minimization step: 2972. Total energy = 7998.4369 kcal/mol (7994.6379 without restraints) Performing minimization step: 2973. Total energy = 7998.4364 kcal/mol (7994.6373 without restraints) Performing minimization step: 2974. Total energy = 7998.4359 kcal/mol (7994.6369 without restraints) Performing minimization step: 2975. Total energy = 7998.4354 kcal/mol (7994.6363 without restraints) Performing minimization step: 2976. Total energy = 7998.4349 kcal/mol (7994.6359 without restraints) Performing minimization step: 2977. Total energy = 7998.4344 kcal/mol (7994.6353 without restraints) Performing minimization step: 2978. Total energy = 7998.4339 kcal/mol (7994.6349 without restraints) Performing minimization step: 2979. Total energy = 7998.4334 kcal/mol (7994.6343 without restraints) Performing minimization step: 2980. Total energy = 7998.4329 kcal/mol (7994.6339 without restraints) Performing minimization step: 2981. Total energy = 7998.4324 kcal/mol (7994.6334 without restraints) Performing minimization step: 2982. Total energy = 7998.4319 kcal/mol (7994.6329 without restraints) Performing minimization step: 2983. Total energy = 7998.4314 kcal/mol (7994.6324 without restraints) Performing minimization step: 2984. Total energy = 7998.4309 kcal/mol (7994.6319 without restraints) Performing minimization step: 2985. Total energy = 7998.4304 kcal/mol (7994.6314 without restraints) Performing minimization step: 2986. Total energy = 7998.4299 kcal/mol (7994.6309 without restraints) Performing minimization step: 2987. Total energy = 7998.4294 kcal/mol (7994.6304 without restraints) Performing minimization step: 2988. Total energy = 7998.4289 kcal/mol (7994.6299 without restraints) Performing minimization step: 2989. Total energy = 7998.4284 kcal/mol (7994.6294 without restraints) Performing minimization step: 2990. Total energy = 7998.4280 kcal/mol (7994.6289 without restraints) Performing minimization step: 2991. Total energy = 7998.4275 kcal/mol (7994.6284 without restraints) Performing minimization step: 2992. Total energy = 7998.4270 kcal/mol (7994.6280 without restraints) Performing minimization step: 2993. Total energy = 7998.4265 kcal/mol (7994.6275 without restraints) Performing minimization step: 2994. Total energy = 7998.4260 kcal/mol (7994.6270 without restraints) Performing minimization step: 2995. Total energy = 7998.4255 kcal/mol (7994.6265 without restraints) Performing minimization step: 2996. Total energy = 7998.4250 kcal/mol (7994.6260 without restraints) Performing minimization step: 2997. Total energy = 7998.4246 kcal/mol (7994.6255 without restraints) Performing minimization step: 2998. Total energy = 7998.4241 kcal/mol (7994.6251 without restraints) Performing minimization step: 2999. Total energy = 7998.4236 kcal/mol (7994.6246 without restraints) Performing minimization step: 3000. Total energy = 7998.4231 kcal/mol (7994.6241 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 7998.4226 kcal/mol (7994.6236 without restraints) Performing minimization step: 3002. Total energy = 7998.4222 kcal/mol (7994.6231 without restraints) Performing minimization step: 3003. Total energy = 7998.4217 kcal/mol (7994.6226 without restraints) Performing minimization step: 3004. Total energy = 7998.4212 kcal/mol (7994.6222 without restraints) Performing minimization step: 3005. Total energy = 7998.4207 kcal/mol (7994.6217 without restraints) Performing minimization step: 3006. Total energy = 7998.4202 kcal/mol (7994.6212 without restraints) Performing minimization step: 3007. Total energy = 7998.4198 kcal/mol (7994.6207 without restraints) Performing minimization step: 3008. Total energy = 7998.4193 kcal/mol (7994.6203 without restraints) Performing minimization step: 3009. Total energy = 7998.4188 kcal/mol (7994.6198 without restraints) Performing minimization step: 3010. Total energy = 7998.4183 kcal/mol (7994.6193 without restraints) Performing minimization step: 3011. Total energy = 7998.4179 kcal/mol (7994.6188 without restraints) Performing minimization step: 3012. Total energy = 7998.4174 kcal/mol (7994.6184 without restraints) Performing minimization step: 3013. Total energy = 7998.4169 kcal/mol (7994.6179 without restraints) Performing minimization step: 3014. Total energy = 7998.4164 kcal/mol (7994.6174 without restraints) Performing minimization step: 3015. Total energy = 7998.4160 kcal/mol (7994.6170 without restraints) Performing minimization step: 3016. Total energy = 7998.4155 kcal/mol (7994.6165 without restraints) Performing minimization step: 3017. Total energy = 7998.4150 kcal/mol (7994.6160 without restraints) Performing minimization step: 3018. Total energy = 7998.4145 kcal/mol (7994.6155 without restraints) Performing minimization step: 3019. Total energy = 7998.4141 kcal/mol (7994.6151 without restraints) Performing minimization step: 3020. Total energy = 7998.4136 kcal/mol (7994.6146 without restraints) Performing minimization step: 3021. Total energy = 7998.4131 kcal/mol (7994.6141 without restraints) Performing minimization step: 3022. Total energy = 7998.4126 kcal/mol (7994.6136 without restraints) Performing minimization step: 3023. Total energy = 7998.4122 kcal/mol (7994.6132 without restraints) Performing minimization step: 3024. Total energy = 7998.4117 kcal/mol (7994.6127 without restraints) Performing minimization step: 3025. Total energy = 7998.4112 kcal/mol (7994.6121 without restraints) Performing minimization step: 3026. Total energy = 7998.4107 kcal/mol (7994.6117 without restraints) Performing minimization step: 3027. Total energy = 7998.4103 kcal/mol (7994.6112 without restraints) Performing minimization step: 3028. Total energy = 7998.4098 kcal/mol (7994.6108 without restraints) Performing minimization step: 3029. Total energy = 7998.4093 kcal/mol (7994.6103 without restraints) Performing minimization step: 3030. Total energy = 7998.4089 kcal/mol (7994.6099 without restraints) Performing minimization step: 3031. Total energy = 7998.4084 kcal/mol (7994.6094 without restraints) Performing minimization step: 3032. Total energy = 7998.4080 kcal/mol (7994.6089 without restraints) Performing minimization step: 3033. Total energy = 7998.4075 kcal/mol (7994.6085 without restraints) Performing minimization step: 3034. Total energy = 7998.4071 kcal/mol (7994.6080 without restraints) Performing minimization step: 3035. Total energy = 7998.4066 kcal/mol (7994.6076 without restraints) Performing minimization step: 3036. Total energy = 7998.4062 kcal/mol (7994.6071 without restraints) Performing minimization step: 3037. Total energy = 7998.4057 kcal/mol (7994.6067 without restraints) Performing minimization step: 3038. Total energy = 7998.4052 kcal/mol (7994.6062 without restraints) Performing minimization step: 3039. Total energy = 7998.4048 kcal/mol (7994.6057 without restraints) Performing minimization step: 3040. Total energy = 7998.4043 kcal/mol (7994.6053 without restraints) Performing minimization step: 3041. Total energy = 7998.4039 kcal/mol (7994.6048 without restraints) Performing minimization step: 3042. Total energy = 7998.4034 kcal/mol (7994.6044 without restraints) Performing minimization step: 3043. Total energy = 7998.4030 kcal/mol (7994.6039 without restraints) Performing minimization step: 3044. Total energy = 7998.4025 kcal/mol (7994.6035 without restraints) Performing minimization step: 3045. Total energy = 7998.4021 kcal/mol (7994.6030 without restraints) Performing minimization step: 3046. Total energy = 7998.4016 kcal/mol (7994.6026 without restraints) Performing minimization step: 3047. Total energy = 7998.4012 kcal/mol (7994.6022 without restraints) Performing minimization step: 3048. Total energy = 7998.4007 kcal/mol (7994.6017 without restraints) Performing minimization step: 3049. Total energy = 7998.4003 kcal/mol (7994.6013 without restraints) Performing minimization step: 3050. Total energy = 7998.3999 kcal/mol (7994.6008 without restraints) Performing minimization step: 3051. Total energy = 7998.3994 kcal/mol (7994.6004 without restraints) Performing minimization step: 3052. Total energy = 7998.3990 kcal/mol (7994.5999 without restraints) Performing minimization step: 3053. Total energy = 7998.3985 kcal/mol (7994.5995 without restraints) Performing minimization step: 3054. Total energy = 7998.3981 kcal/mol (7994.5990 without restraints) Performing minimization step: 3055. Total energy = 7998.3976 kcal/mol (7994.5986 without restraints) Performing minimization step: 3056. Total energy = 7998.3972 kcal/mol (7994.5982 without restraints) Performing minimization step: 3057. Total energy = 7998.3967 kcal/mol (7994.5977 without restraints) Performing minimization step: 3058. Total energy = 7998.3963 kcal/mol (7994.5973 without restraints) Performing minimization step: 3059. Total energy = 7998.3959 kcal/mol (7994.5968 without restraints) Performing minimization step: 3060. Total energy = 7998.3954 kcal/mol (7994.5964 without restraints) Performing minimization step: 3061. Total energy = 7998.3950 kcal/mol (7994.5960 without restraints) Performing minimization step: 3062. Total energy = 7998.3946 kcal/mol (7994.5955 without restraints) Performing minimization step: 3063. Total energy = 7998.3941 kcal/mol (7994.5951 without restraints) Performing minimization step: 3064. Total energy = 7998.3937 kcal/mol (7994.5947 without restraints) Performing minimization step: 3065. Total energy = 7998.3932 kcal/mol (7994.5942 without restraints) Performing minimization step: 3066. Total energy = 7998.3928 kcal/mol (7994.5938 without restraints) Performing minimization step: 3067. Total energy = 7998.3924 kcal/mol (7994.5933 without restraints) Performing minimization step: 3068. Total energy = 7998.3919 kcal/mol (7994.5929 without restraints) Performing minimization step: 3069. Total energy = 7998.3915 kcal/mol (7994.5925 without restraints) Performing minimization step: 3070. Total energy = 7998.3911 kcal/mol (7994.5921 without restraints) Performing minimization step: 3071. Total energy = 7998.3906 kcal/mol (7994.5916 without restraints) Performing minimization step: 3072. Total energy = 7998.3902 kcal/mol (7994.5912 without restraints) Performing minimization step: 3073. Total energy = 7998.3898 kcal/mol (7994.5908 without restraints) Performing minimization step: 3074. Total energy = 7998.3894 kcal/mol (7994.5903 without restraints) Performing minimization step: 3075. Total energy = 7998.3889 kcal/mol (7994.5899 without restraints) Performing minimization step: 3076. Total energy = 7998.3885 kcal/mol (7994.5895 without restraints) Performing minimization step: 3077. Total energy = 7998.3881 kcal/mol (7994.5890 without restraints) Performing minimization step: 3078. Total energy = 7998.3876 kcal/mol (7994.5886 without restraints) Performing minimization step: 3079. Total energy = 7998.3872 kcal/mol (7994.5882 without restraints) Performing minimization step: 3080. Total energy = 7998.3868 kcal/mol (7994.5878 without restraints) Performing minimization step: 3081. Total energy = 7998.3864 kcal/mol (7994.5873 without restraints) Performing minimization step: 3082. Total energy = 7998.3859 kcal/mol (7994.5869 without restraints) Performing minimization step: 3083. Total energy = 7998.3855 kcal/mol (7994.5865 without restraints) Performing minimization step: 3084. Total energy = 7998.3851 kcal/mol (7994.5861 without restraints) Performing minimization step: 3085. Total energy = 7998.3847 kcal/mol (7994.5856 without restraints) Performing minimization step: 3086. Total energy = 7998.3842 kcal/mol (7994.5852 without restraints) Performing minimization step: 3087. Total energy = 7998.3838 kcal/mol (7994.5848 without restraints) Performing minimization step: 3088. Total energy = 7998.3834 kcal/mol (7994.5844 without restraints) Performing minimization step: 3089. Total energy = 7998.3830 kcal/mol (7994.5840 without restraints) Performing minimization step: 3090. Total energy = 7998.3826 kcal/mol (7994.5836 without restraints) Performing minimization step: 3091. Total energy = 7998.3821 kcal/mol (7994.5831 without restraints) Performing minimization step: 3092. Total energy = 7998.3817 kcal/mol (7994.5827 without restraints) Performing minimization step: 3093. Total energy = 7998.3813 kcal/mol (7994.5823 without restraints) Performing minimization step: 3094. Total energy = 7998.3809 kcal/mol (7994.5819 without restraints) Performing minimization step: 3095. Total energy = 7998.3805 kcal/mol (7994.5815 without restraints) Performing minimization step: 3096. Total energy = 7998.3801 kcal/mol (7994.5811 without restraints) Performing minimization step: 3097. Total energy = 7998.3796 kcal/mol (7994.5806 without restraints) Performing minimization step: 3098. Total energy = 7998.3792 kcal/mol (7994.5802 without restraints) Performing minimization step: 3099. Total energy = 7998.3788 kcal/mol (7994.5798 without restraints) Performing minimization step: 3100. Total energy = 7998.3784 kcal/mol (7994.5794 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 7998.3780 kcal/mol (7994.5790 without restraints) Performing minimization step: 3102. Total energy = 7998.3776 kcal/mol (7994.5786 without restraints) Performing minimization step: 3103. Total energy = 7998.3772 kcal/mol (7994.5782 without restraints) Performing minimization step: 3104. Total energy = 7998.3768 kcal/mol (7994.5778 without restraints) Performing minimization step: 3105. Total energy = 7998.3763 kcal/mol (7994.5773 without restraints) Performing minimization step: 3106. Total energy = 7998.3759 kcal/mol (7994.5769 without restraints) Performing minimization step: 3107. Total energy = 7998.3755 kcal/mol (7994.5765 without restraints) Performing minimization step: 3108. Total energy = 7998.3751 kcal/mol (7994.5761 without restraints) Performing minimization step: 3109. Total energy = 7998.3747 kcal/mol (7994.5757 without restraints) Performing minimization step: 3110. Total energy = 7998.3743 kcal/mol (7994.5753 without restraints) Performing minimization step: 3111. Total energy = 7998.3739 kcal/mol (7994.5749 without restraints) Performing minimization step: 3112. Total energy = 7998.3735 kcal/mol (7994.5745 without restraints) Performing minimization step: 3113. Total energy = 7998.3731 kcal/mol (7994.5741 without restraints) Performing minimization step: 3114. Total energy = 7998.3727 kcal/mol (7994.5737 without restraints) Performing minimization step: 3115. Total energy = 7998.3723 kcal/mol (7994.5733 without restraints) Performing minimization step: 3116. Total energy = 7998.3719 kcal/mol (7994.5729 without restraints) Performing minimization step: 3117. Total energy = 7998.3715 kcal/mol (7994.5725 without restraints) Performing minimization step: 3118. Total energy = 7998.3711 kcal/mol (7994.5721 without restraints) Performing minimization step: 3119. Total energy = 7998.3707 kcal/mol (7994.5717 without restraints) Performing minimization step: 3120. Total energy = 7998.3702 kcal/mol (7994.5712 without restraints) Performing minimization step: 3121. Total energy = 7998.3683 kcal/mol (7994.5694 without restraints) Performing minimization step: 3122. Total energy = 7998.3650 kcal/mol (7994.5659 without restraints) Performing minimization step: 3123. Total energy = 7998.3623 kcal/mol (7994.5636 without restraints) Performing minimization step: 3124. Total energy = 7998.3567 kcal/mol (7994.5579 without restraints) Performing minimization step: 3125. Total energy = 7998.3562 kcal/mol (7994.5572 without restraints) Performing minimization step: 3126. Total energy = 7998.3559 kcal/mol (7994.5568 without restraints) Performing minimization step: 3127. Total energy = 7998.3553 kcal/mol (7994.5563 without restraints) Performing minimization step: 3128. Total energy = 7998.3546 kcal/mol (7994.5556 without restraints) Performing minimization step: 3129. Total energy = 7998.3542 kcal/mol (7994.5552 without restraints) Performing minimization step: 3130. Total energy = 7998.3537 kcal/mol (7994.5547 without restraints) Performing minimization step: 3131. Total energy = 7998.3529 kcal/mol (7994.5539 without restraints) Performing minimization step: 3132. Total energy = 7998.3526 kcal/mol (7994.5536 without restraints) Performing minimization step: 3133. Total energy = 7998.3521 kcal/mol (7994.5532 without restraints) Performing minimization step: 3134. Total energy = 7998.3514 kcal/mol (7994.5524 without restraints) Performing minimization step: 3135. Total energy = 7998.3510 kcal/mol (7994.5520 without restraints) Performing minimization step: 3136. Total energy = 7998.3493 kcal/mol (7994.5504 without restraints) Performing minimization step: 3137. Total energy = 7998.3457 kcal/mol (7994.5467 without restraints) Performing minimization step: 3138. Total energy = 7998.3443 kcal/mol (7994.5454 without restraints) Performing minimization step: 3139. Total energy = 7998.3421 kcal/mol (7994.5435 without restraints) Performing minimization step: 3140. Total energy = 7998.3414 kcal/mol (7994.5425 without restraints) Performing minimization step: 3141. Total energy = 7998.3411 kcal/mol (7994.5420 without restraints) Performing minimization step: 3142. Total energy = 7998.3404 kcal/mol (7994.5414 without restraints) Performing minimization step: 3143. Total energy = 7998.3398 kcal/mol (7994.5409 without restraints) Performing minimization step: 3144. Total energy = 7998.3394 kcal/mol (7994.5404 without restraints) Performing minimization step: 3145. Total energy = 7998.3388 kcal/mol (7994.5397 without restraints) Performing minimization step: 3146. Total energy = 7998.3381 kcal/mol (7994.5391 without restraints) Performing minimization step: 3147. Total energy = 7994.4162 kcal/mol (7990.0366 without restraints) Performing minimization step: 3148. Total energy = 7993.5522 kcal/mol (7989.7793 without restraints) Performing minimization step: 3149. Total energy = 7993.5030 kcal/mol (7989.7090 without restraints) Performing minimization step: 3150. Total energy = 7993.4763 kcal/mol (7989.6848 without restraints) Performing minimization step: 3151. Total energy = 7993.4331 kcal/mol (7989.6399 without restraints) Performing minimization step: 3152. Total energy = 7993.3976 kcal/mol (7989.6042 without restraints) Performing minimization step: 3153. Total energy = 7993.3561 kcal/mol (7989.5617 without restraints) Performing minimization step: 3154. Total energy = 7993.3156 kcal/mol (7989.5205 without restraints) Performing minimization step: 3155. Total energy = 7993.2718 kcal/mol (7989.4757 without restraints) Performing minimization step: 3156. Total energy = 7993.2313 kcal/mol (7989.4388 without restraints) Performing minimization step: 3157. Total energy = 7993.1766 kcal/mol (7989.3830 without restraints) Performing minimization step: 3158. Total energy = 7993.1340 kcal/mol (7989.3456 without restraints) Performing minimization step: 3159. Total energy = 7993.0750 kcal/mol (7989.2885 without restraints) Performing minimization step: 3160. Total energy = 7993.0163 kcal/mol (7989.2277 without restraints) Performing minimization step: 3161. Total energy = 7992.9546 kcal/mol (7989.1635 without restraints) Performing minimization step: 3162. Total energy = 7992.8903 kcal/mol (7989.0977 without restraints) Performing minimization step: 3163. Total energy = 7992.8212 kcal/mol (7989.0267 without restraints) Performing minimization step: 3164. Total energy = 7992.7570 kcal/mol (7988.9684 without restraints) Performing minimization step: 3165. Total energy = 7992.6677 kcal/mol (7988.8762 without restraints) Performing minimization step: 3166. Total energy = 7992.5965 kcal/mol (7988.8121 without restraints) Performing minimization step: 3167. Total energy = 7992.4975 kcal/mol (7988.7152 without restraints) Performing minimization step: 3168. Total energy = 7992.3979 kcal/mol (7988.6110 without restraints) Performing minimization step: 3169. Total energy = 7992.2902 kcal/mol (7988.4995 without restraints) Performing minimization step: 3170. Total energy = 7992.1776 kcal/mol (7988.3840 without restraints) Performing minimization step: 3171. Total energy = 7992.0621 kcal/mol (7988.2737 without restraints) Performing minimization step: 3172. Total energy = 7991.9291 kcal/mol (7988.1528 without restraints) Performing minimization step: 3173. Total energy = 7991.7715 kcal/mol (7987.9952 without restraints) Performing minimization step: 3174. Total energy = 7991.5988 kcal/mol (7987.8141 without restraints) Performing minimization step: 3175. Total energy = 7991.4332 kcal/mol (7987.6605 without restraints) Performing minimization step: 3176. Total energy = 7991.2209 kcal/mol (7987.4638 without restraints) Performing minimization step: 3177. Total energy = 7990.9695 kcal/mol (7987.2075 without restraints) Performing minimization step: 3178. Total energy = 7990.6833 kcal/mol (7986.9040 without restraints) Performing minimization step: 3179. Total energy = 7990.3960 kcal/mol (7986.6274 without restraints) Performing minimization step: 3180. Total energy = 7990.0474 kcal/mol (7986.3192 without restraints) Performing minimization step: 3181. Total energy = 7989.5188 kcal/mol (7985.7422 without restraints) Performing minimization step: 3182. Total energy = 7989.0395 kcal/mol (7985.2675 without restraints) Performing minimization step: 3183. Total energy = 7988.3681 kcal/mol (7984.6209 without restraints) Performing minimization step: 3184. Total energy = 7987.5001 kcal/mol (7983.7510 without restraints) Performing minimization step: 3185. Total energy = 7986.3591 kcal/mol (7982.6013 without restraints) Performing minimization step: 3186. Total energy = 7984.8282 kcal/mol (7981.1246 without restraints) Performing minimization step: 3187. Total energy = 7981.9236 kcal/mol (7978.1924 without restraints) Performing minimization step: 3188. Total energy = 7977.4067 kcal/mol (7973.3232 without restraints) Performing minimization step: 3189. Total energy = 7972.6074 kcal/mol (7968.2774 without restraints) Performing minimization step: 3190. Total energy = 7967.4800 kcal/mol (7963.0850 without restraints) Performing minimization step: 3191. Total energy = 7962.2903 kcal/mol (7957.8878 without restraints) Performing minimization step: 3192. Total energy = 7957.1111 kcal/mol (7952.7122 without restraints) Performing minimization step: 3193. Total energy = 7951.9516 kcal/mol (7947.5563 without restraints) Performing minimization step: 3194. Total energy = 7946.8113 kcal/mol (7942.4195 without restraints) Performing minimization step: 3195. Total energy = 7941.6890 kcal/mol (7937.3007 without restraints) Performing minimization step: 3196. Total energy = 7936.5842 kcal/mol (7932.1992 without restraints) Performing minimization step: 3197. Total energy = 7931.4964 kcal/mol (7927.1146 without restraints) Performing minimization step: 3198. Total energy = 7926.4249 kcal/mol (7922.0464 without restraints) Performing minimization step: 3199. Total energy = 7921.3696 kcal/mol (7916.9943 without restraints) Performing minimization step: 3200. Total energy = 7916.3294 kcal/mol (7911.9571 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 7911.3041 kcal/mol (7906.9349 without restraints) Performing minimization step: 3202. Total energy = 7906.2934 kcal/mol (7901.9271 without restraints) Performing minimization step: 3203. Total energy = 7901.2963 kcal/mol (7896.9329 without restraints) Performing minimization step: 3204. Total energy = 7896.3127 kcal/mol (7891.9522 without restraints) Performing minimization step: 3205. Total energy = 7891.3422 kcal/mol (7886.9846 without restraints) Performing minimization step: 3206. Total energy = 7886.3845 kcal/mol (7882.0296 without restraints) Performing minimization step: 3207. Total energy = 7881.4392 kcal/mol (7877.0870 without restraints) Performing minimization step: 3208. Total energy = 7876.5059 kcal/mol (7872.1564 without restraints) Performing minimization step: 3209. Total energy = 7871.5843 kcal/mol (7867.2374 without restraints) Performing minimization step: 3210. Total energy = 7866.6740 kcal/mol (7862.3298 without restraints) Performing minimization step: 3211. Total energy = 7861.7748 kcal/mol (7857.4331 without restraints) Performing minimization step: 3212. Total energy = 7856.8863 kcal/mol (7852.5472 without restraints) Performing minimization step: 3213. Total energy = 7852.0083 kcal/mol (7847.6717 without restraints) Performing minimization step: 3214. Total energy = 7847.1405 kcal/mol (7842.8064 without restraints) Performing minimization step: 3215. Total energy = 7842.2829 kcal/mol (7837.9512 without restraints) Performing minimization step: 3216. Total energy = 7837.4348 kcal/mol (7833.1055 without restraints) Performing minimization step: 3217. Total energy = 7832.5960 kcal/mol (7828.2691 without restraints) Performing minimization step: 3218. Total energy = 7827.7665 kcal/mol (7823.4419 without restraints) Performing minimization step: 3219. Total energy = 7822.9461 kcal/mol (7818.6239 without restraints) Performing minimization step: 3220. Total energy = 7818.1341 kcal/mol (7813.8142 without restraints) Performing minimization step: 3221. Total energy = 7813.3310 kcal/mol (7809.0133 without restraints) Performing minimization step: 3222. Total energy = 7808.5362 kcal/mol (7804.2209 without restraints) Performing minimization step: 3223. Total energy = 7803.7494 kcal/mol (7799.4362 without restraints) Performing minimization step: 3224. Total energy = 7798.9705 kcal/mol (7794.6594 without restraints) Performing minimization step: 3225. Total energy = 7794.1995 kcal/mol (7789.8906 without restraints) Performing minimization step: 3226. Total energy = 7789.4362 kcal/mol (7785.1295 without restraints) Performing minimization step: 3227. Total energy = 7784.6803 kcal/mol (7780.3757 without restraints) Performing minimization step: 3228. Total energy = 7779.9318 kcal/mol (7775.6294 without restraints) Performing minimization step: 3229. Total energy = 7775.1907 kcal/mol (7770.8902 without restraints) Performing minimization step: 3230. Total energy = 7770.4562 kcal/mol (7766.1578 without restraints) Performing minimization step: 3231. Total energy = 7765.7286 kcal/mol (7761.4322 without restraints) Performing minimization step: 3232. Total energy = 7761.0079 kcal/mol (7756.7135 without restraints) Performing minimization step: 3233. Total energy = 7756.2936 kcal/mol (7752.0013 without restraints) Performing minimization step: 3234. Total energy = 7751.5856 kcal/mol (7747.2952 without restraints) Performing minimization step: 3235. Total energy = 7746.8839 kcal/mol (7742.5954 without restraints) Performing minimization step: 3236. Total energy = 7742.1882 kcal/mol (7737.9017 without restraints) Performing minimization step: 3237. Total energy = 7737.4988 kcal/mol (7733.2143 without restraints) Performing minimization step: 3238. Total energy = 7732.8152 kcal/mol (7728.5325 without restraints) Performing minimization step: 3239. Total energy = 7728.1373 kcal/mol (7723.8565 without restraints) Performing minimization step: 3240. Total energy = 7723.4652 kcal/mol (7719.1864 without restraints) Performing minimization step: 3241. Total energy = 7718.7986 kcal/mol (7714.5215 without restraints) Performing minimization step: 3242. Total energy = 7714.1374 kcal/mol (7709.8622 without restraints) Performing minimization step: 3243. Total energy = 7709.4816 kcal/mol (7705.2082 without restraints) Performing minimization step: 3244. Total energy = 7704.8313 kcal/mol (7700.5598 without restraints) Performing minimization step: 3245. Total energy = 7700.1860 kcal/mol (7695.9163 without restraints) Performing minimization step: 3246. Total energy = 7695.5459 kcal/mol (7691.2779 without restraints) Performing minimization step: 3247. Total energy = 7690.9105 kcal/mol (7686.6443 without restraints) Performing minimization step: 3248. Total energy = 7686.2802 kcal/mol (7682.0157 without restraints) Performing minimization step: 3249. Total energy = 7681.6545 kcal/mol (7677.3917 without restraints) Performing minimization step: 3250. Total energy = 7677.0334 kcal/mol (7672.7724 without restraints) Performing minimization step: 3251. Total energy = 7672.4172 kcal/mol (7668.1579 without restraints) Performing minimization step: 3252. Total energy = 7667.8053 kcal/mol (7663.5478 without restraints) Performing minimization step: 3253. Total energy = 7663.1979 kcal/mol (7658.9420 without restraints) Performing minimization step: 3254. Total energy = 7658.5949 kcal/mol (7654.3407 without restraints) Performing minimization step: 3255. Total energy = 7653.9962 kcal/mol (7649.7437 without restraints) Performing minimization step: 3256. Total energy = 7649.4015 kcal/mol (7645.1508 without restraints) Performing minimization step: 3257. Total energy = 7644.8113 kcal/mol (7640.5621 without restraints) Performing minimization step: 3258. Total energy = 7640.2251 kcal/mol (7635.9775 without restraints) Performing minimization step: 3259. Total energy = 7635.6429 kcal/mol (7631.3970 without restraints) Performing minimization step: 3260. Total energy = 7631.0647 kcal/mol (7626.8204 without restraints) Performing minimization step: 3261. Total energy = 7626.4904 kcal/mol (7622.2477 without restraints) Performing minimization step: 3262. Total energy = 7621.9199 kcal/mol (7617.6788 without restraints) Performing minimization step: 3263. Total energy = 7617.3532 kcal/mol (7613.1137 without restraints) Performing minimization step: 3264. Total energy = 7612.7905 kcal/mol (7608.5525 without restraints) Performing minimization step: 3265. Total energy = 7608.2312 kcal/mol (7603.9948 without restraints) Performing minimization step: 3266. Total energy = 7603.6755 kcal/mol (7599.4406 without restraints) Performing minimization step: 3267. Total energy = 7599.1234 kcal/mol (7594.8900 without restraints) Performing minimization step: 3268. Total energy = 7594.5749 kcal/mol (7590.3431 without restraints) Performing minimization step: 3269. Total energy = 7590.0298 kcal/mol (7585.7995 without restraints) Performing minimization step: 3270. Total energy = 7585.4880 kcal/mol (7581.2592 without restraints) Performing minimization step: 3271. Total energy = 7580.9495 kcal/mol (7576.7223 without restraints) Performing minimization step: 3272. Total energy = 7576.4139 kcal/mol (7572.1880 without restraints) Performing minimization step: 3273. Total energy = 7571.8818 kcal/mol (7567.6576 without restraints) Performing minimization step: 3274. Total energy = 7567.3531 kcal/mol (7563.1304 without restraints) Performing minimization step: 3275. Total energy = 7562.8276 kcal/mol (7558.6063 without restraints) Performing minimization step: 3276. Total energy = 7558.3052 kcal/mol (7554.0853 without restraints) Performing minimization step: 3277. Total energy = 7553.7858 kcal/mol (7549.5675 without restraints) Performing minimization step: 3278. Total energy = 7549.2694 kcal/mol (7545.0524 without restraints) Performing minimization step: 3279. Total energy = 7544.7560 kcal/mol (7540.5405 without restraints) Performing minimization step: 3280. Total energy = 7540.2456 kcal/mol (7536.0316 without restraints) Performing minimization step: 3281. Total energy = 7535.7384 kcal/mol (7531.5258 without restraints) Performing minimization step: 3282. Total energy = 7531.2338 kcal/mol (7527.0226 without restraints) Performing minimization step: 3283. Total energy = 7526.7321 kcal/mol (7522.5223 without restraints) Performing minimization step: 3284. Total energy = 7522.2333 kcal/mol (7518.0250 without restraints) Performing minimization step: 3285. Total energy = 7517.7372 kcal/mol (7513.5302 without restraints) Performing minimization step: 3286. Total energy = 7513.2438 kcal/mol (7509.0382 without restraints) Performing minimization step: 3287. Total energy = 7508.7531 kcal/mol (7504.5489 without restraints) Performing minimization step: 3288. Total energy = 7504.2655 kcal/mol (7500.0627 without restraints) Performing minimization step: 3289. Total energy = 7499.7802 kcal/mol (7495.5787 without restraints) Performing minimization step: 3290. Total energy = 7495.2975 kcal/mol (7491.0975 without restraints) Performing minimization step: 3291. Total energy = 7490.8176 kcal/mol (7486.6189 without restraints) Performing minimization step: 3292. Total energy = 7486.3400 kcal/mol (7482.1427 without restraints) Performing minimization step: 3293. Total energy = 7481.8650 kcal/mol (7477.6690 without restraints) Performing minimization step: 3294. Total energy = 7477.3925 kcal/mol (7473.1979 without restraints) Performing minimization step: 3295. Total energy = 7472.9226 kcal/mol (7468.7293 without restraints) Performing minimization step: 3296. Total energy = 7468.4551 kcal/mol (7464.2632 without restraints) Performing minimization step: 3297. Total energy = 7463.9900 kcal/mol (7459.7994 without restraints) Performing minimization step: 3298. Total energy = 7459.5274 kcal/mol (7455.3380 without restraints) Performing minimization step: 3299. Total energy = 7455.0671 kcal/mol (7450.8791 without restraints) Performing minimization step: 3300. Total energy = 7450.6095 kcal/mol (7446.4228 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 7446.1540 kcal/mol (7441.9686 without restraints) Performing minimization step: 3302. Total energy = 7441.7009 kcal/mol (7437.5168 without restraints) Performing minimization step: 3303. Total energy = 7437.2501 kcal/mol (7433.0673 without restraints) Performing minimization step: 3304. Total energy = 7432.8015 kcal/mol (7428.6199 without restraints) Performing minimization step: 3305. Total energy = 7428.3553 kcal/mol (7424.1750 without restraints) Performing minimization step: 3306. Total energy = 7423.9114 kcal/mol (7419.7326 without restraints) Performing minimization step: 3307. Total energy = 7419.4699 kcal/mol (7415.2922 without restraints) Performing minimization step: 3308. Total energy = 7415.0305 kcal/mol (7410.8541 without restraints) Performing minimization step: 3309. Total energy = 7410.5932 kcal/mol (7406.4181 without restraints) Performing minimization step: 3310. Total energy = 7406.1583 kcal/mol (7401.9844 without restraints) Performing minimization step: 3311. Total energy = 7401.7257 kcal/mol (7397.5533 without restraints) Performing minimization step: 3312. Total energy = 7397.2952 kcal/mol (7393.1238 without restraints) Performing minimization step: 3313. Total energy = 7392.8669 kcal/mol (7388.6969 without restraints) Performing minimization step: 3314. Total energy = 7388.4407 kcal/mol (7384.2719 without restraints) Performing minimization step: 3315. Total energy = 7384.0169 kcal/mol (7379.8493 without restraints) Performing minimization step: 3316. Total energy = 7379.5952 kcal/mol (7375.4288 without restraints) Performing minimization step: 3317. Total energy = 7375.1757 kcal/mol (7371.0106 without restraints) Performing minimization step: 3318. Total energy = 7370.7583 kcal/mol (7366.5945 without restraints) Performing minimization step: 3319. Total energy = 7366.3436 kcal/mol (7362.1810 without restraints) Performing minimization step: 3320. Total energy = 7361.9310 kcal/mol (7357.7697 without restraints) Performing minimization step: 3321. Total energy = 7357.5202 kcal/mol (7353.3601 without restraints) Performing minimization step: 3322. Total energy = 7353.1116 kcal/mol (7348.9527 without restraints) Performing minimization step: 3323. Total energy = 7348.7051 kcal/mol (7344.5474 without restraints) Performing minimization step: 3324. Total energy = 7344.3008 kcal/mol (7340.1443 without restraints) Performing minimization step: 3325. Total energy = 7339.8985 kcal/mol (7335.7432 without restraints) Performing minimization step: 3326. Total energy = 7335.4983 kcal/mol (7331.3442 without restraints) Performing minimization step: 3327. Total energy = 7331.1003 kcal/mol (7326.9475 without restraints) Performing minimization step: 3328. Total energy = 7326.7046 kcal/mol (7322.5530 without restraints) Performing minimization step: 3329. Total energy = 7322.3109 kcal/mol (7318.1605 without restraints) Performing minimization step: 3330. Total energy = 7317.9197 kcal/mol (7313.7706 without restraints) Performing minimization step: 3331. Total energy = 7313.5307 kcal/mol (7309.3827 without restraints) Performing minimization step: 3332. Total energy = 7309.1436 kcal/mol (7304.9968 without restraints) Performing minimization step: 3333. Total energy = 7304.7586 kcal/mol (7300.6130 without restraints) Performing minimization step: 3334. Total energy = 7300.3759 kcal/mol (7296.2315 without restraints) Performing minimization step: 3335. Total energy = 7295.9954 kcal/mol (7291.8523 without restraints) Performing minimization step: 3336. Total energy = 7291.6172 kcal/mol (7287.4752 without restraints) Performing minimization step: 3337. Total energy = 7287.2413 kcal/mol (7283.1006 without restraints) Performing minimization step: 3338. Total energy = 7282.8675 kcal/mol (7278.7279 without restraints) Performing minimization step: 3339. Total energy = 7278.4959 kcal/mol (7274.3575 without restraints) Performing minimization step: 3340. Total energy = 7274.1266 kcal/mol (7269.9894 without restraints) Performing minimization step: 3341. Total energy = 7269.7594 kcal/mol (7265.6234 without restraints) Performing minimization step: 3342. Total energy = 7265.3944 kcal/mol (7261.2596 without restraints) Performing minimization step: 3343. Total energy = 7261.0319 kcal/mol (7256.8983 without restraints) Performing minimization step: 3344. Total energy = 7256.6719 kcal/mol (7252.5395 without restraints) Performing minimization step: 3345. Total energy = 7252.3137 kcal/mol (7248.1825 without restraints) Performing minimization step: 3346. Total energy = 7247.9583 kcal/mol (7243.8283 without restraints) Performing minimization step: 3347. Total energy = 7243.6048 kcal/mol (7239.4760 without restraints) Performing minimization step: 3348. Total energy = 7239.2539 kcal/mol (7235.1262 without restraints) Performing minimization step: 3349. Total energy = 7234.9053 kcal/mol (7230.7789 without restraints) Performing minimization step: 3350. Total energy = 7230.5590 kcal/mol (7226.4338 without restraints) Performing minimization step: 3351. Total energy = 7226.2153 kcal/mol (7222.0912 without restraints) Performing minimization step: 3352. Total energy = 7221.8738 kcal/mol (7217.7509 without restraints) Performing minimization step: 3353. Total energy = 7217.5349 kcal/mol (7213.4132 without restraints) Performing minimization step: 3354. Total energy = 7213.1984 kcal/mol (7209.0779 without restraints) Performing minimization step: 3355. Total energy = 7208.8645 kcal/mol (7204.7452 without restraints) Performing minimization step: 3356. Total energy = 7204.5331 kcal/mol (7200.4150 without restraints) Performing minimization step: 3357. Total energy = 7200.2042 kcal/mol (7196.0873 without restraints) Performing minimization step: 3358. Total energy = 7195.8781 kcal/mol (7191.7624 without restraints) Performing minimization step: 3359. Total energy = 7191.5545 kcal/mol (7187.4400 without restraints) Performing minimization step: 3360. Total energy = 7187.2333 kcal/mol (7183.1200 without restraints) Performing minimization step: 3361. Total energy = 7182.9149 kcal/mol (7178.8028 without restraints) Performing minimization step: 3362. Total energy = 7178.5991 kcal/mol (7174.4882 without restraints) Performing minimization step: 3363. Total energy = 7174.2858 kcal/mol (7170.1759 without restraints) Performing minimization step: 3364. Total energy = 7169.9749 kcal/mol (7165.8664 without restraints) Performing minimization step: 3365. Total energy = 7165.6672 kcal/mol (7161.5598 without restraints) Performing minimization step: 3366. Total energy = 7161.3621 kcal/mol (7157.2560 without restraints) Performing minimization step: 3367. Total energy = 7157.0601 kcal/mol (7152.9552 without restraints) Performing minimization step: 3368. Total energy = 7152.7606 kcal/mol (7148.6569 without restraints) Performing minimization step: 3369. Total energy = 7148.4640 kcal/mol (7144.3615 without restraints) Performing minimization step: 3370. Total energy = 7144.1703 kcal/mol (7140.0690 without restraints) Performing minimization step: 3371. Total energy = 7139.8794 kcal/mol (7135.7794 without restraints) Performing minimization step: 3372. Total energy = 7135.5916 kcal/mol (7131.4927 without restraints) Performing minimization step: 3373. Total energy = 7131.3067 kcal/mol (7127.2090 without restraints) Performing minimization step: 3374. Total energy = 7127.0247 kcal/mol (7122.9283 without restraints) Performing minimization step: 3375. Total energy = 7122.7456 kcal/mol (7118.6503 without restraints) Performing minimization step: 3376. Total energy = 7118.4696 kcal/mol (7114.3757 without restraints) Performing minimization step: 3377. Total energy = 7114.1968 kcal/mol (7110.1041 without restraints) Performing minimization step: 3378. Total energy = 7109.9269 kcal/mol (7105.8352 without restraints) Performing minimization step: 3379. Total energy = 7105.6602 kcal/mol (7101.5699 without restraints) Performing minimization step: 3380. Total energy = 7101.3969 kcal/mol (7097.3079 without restraints) Performing minimization step: 3381. Total energy = 7097.1368 kcal/mol (7093.0490 without restraints) Performing minimization step: 3382. Total energy = 7092.8800 kcal/mol (7088.7934 without restraints) Performing minimization step: 3383. Total energy = 7088.6266 kcal/mol (7084.5413 without restraints) Performing minimization step: 3384. Total energy = 7084.3764 kcal/mol (7080.2922 without restraints) Performing minimization step: 3385. Total energy = 7080.1295 kcal/mol (7076.0466 without restraints) Performing minimization step: 3386. Total energy = 7075.8860 kcal/mol (7071.8044 without restraints) Performing minimization step: 3387. Total energy = 7071.6462 kcal/mol (7067.5658 without restraints) Performing minimization step: 3388. Total energy = 7067.4097 kcal/mol (7063.3306 without restraints) Performing minimization step: 3389. Total energy = 7063.1767 kcal/mol (7059.0988 without restraints) Performing minimization step: 3390. Total energy = 7058.9472 kcal/mol (7054.8706 without restraints) Performing minimization step: 3391. Total energy = 7054.7214 kcal/mol (7050.6460 without restraints) Performing minimization step: 3392. Total energy = 7050.4991 kcal/mol (7046.4250 without restraints) Performing minimization step: 3393. Total energy = 7046.2803 kcal/mol (7042.2075 without restraints) Performing minimization step: 3394. Total energy = 7042.0652 kcal/mol (7037.9935 without restraints) Performing minimization step: 3395. Total energy = 7037.8540 kcal/mol (7033.7837 without restraints) Performing minimization step: 3396. Total energy = 7033.6465 kcal/mol (7029.5775 without restraints) Performing minimization step: 3397. Total energy = 7029.4429 kcal/mol (7025.3752 without restraints) Performing minimization step: 3398. Total energy = 7025.2433 kcal/mol (7021.1768 without restraints) Performing minimization step: 3399. Total energy = 7021.0475 kcal/mol (7016.9823 without restraints) Performing minimization step: 3400. Total energy = 7016.8557 kcal/mol (7012.7919 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 7012.6680 kcal/mol (7008.6054 without restraints) Performing minimization step: 3402. Total energy = 7008.4839 kcal/mol (7004.4225 without restraints) Performing minimization step: 3403. Total energy = 7004.3039 kcal/mol (7000.2439 without restraints) Performing minimization step: 3404. Total energy = 7000.1284 kcal/mol (6996.0697 without restraints) Performing minimization step: 3405. Total energy = 6995.9570 kcal/mol (6991.8997 without restraints) Performing minimization step: 3406. Total energy = 6991.7898 kcal/mol (6987.7337 without restraints) Performing minimization step: 3407. Total energy = 6987.6268 kcal/mol (6983.5721 without restraints) Performing minimization step: 3408. Total energy = 6983.4682 kcal/mol (6979.4148 without restraints) Performing minimization step: 3409. Total energy = 6979.3138 kcal/mol (6975.2617 without restraints) Performing minimization step: 3410. Total energy = 6975.1639 kcal/mol (6971.1130 without restraints) Performing minimization step: 3411. Total energy = 6971.0183 kcal/mol (6966.9688 without restraints) Performing minimization step: 3412. Total energy = 6966.8772 kcal/mol (6962.8291 without restraints) Performing minimization step: 3413. Total energy = 6962.7406 kcal/mol (6958.6939 without restraints) Performing minimization step: 3414. Total energy = 6958.6083 kcal/mol (6954.5630 without restraints) Performing minimization step: 3415. Total energy = 6954.4811 kcal/mol (6950.4371 without restraints) Performing minimization step: 3416. Total energy = 6950.3579 kcal/mol (6946.3152 without restraints) Performing minimization step: 3417. Total energy = 6946.2397 kcal/mol (6942.1984 without restraints) Performing minimization step: 3418. Total energy = 6942.1261 kcal/mol (6938.0861 without restraints) Performing minimization step: 3419. Total energy = 6938.0177 kcal/mol (6933.9792 without restraints) Performing minimization step: 3420. Total energy = 6933.9139 kcal/mol (6929.8767 without restraints) Performing minimization step: 3421. Total energy = 6929.8154 kcal/mol (6925.7796 without restraints) Performing minimization step: 3422. Total energy = 6925.7213 kcal/mol (6921.6867 without restraints) Performing minimization step: 3423. Total energy = 6921.6318 kcal/mol (6917.5986 without restraints) Performing minimization step: 3424. Total energy = 6917.5475 kcal/mol (6913.5157 without restraints) Performing minimization step: 3425. Total energy = 6913.4683 kcal/mol (6909.4379 without restraints) Performing minimization step: 3426. Total energy = 6909.3939 kcal/mol (6905.3648 without restraints) Performing minimization step: 3427. Total energy = 6905.3248 kcal/mol (6901.2973 without restraints) Performing minimization step: 3428. Total energy = 6901.2608 kcal/mol (6897.2346 without restraints) Performing minimization step: 3429. Total energy = 6897.2020 kcal/mol (6893.1772 without restraints) Performing minimization step: 3430. Total energy = 6893.1484 kcal/mol (6889.1250 without restraints) Performing minimization step: 3431. Total energy = 6889.0999 kcal/mol (6885.0780 without restraints) Performing minimization step: 3432. Total energy = 6885.0566 kcal/mol (6881.0360 without restraints) Performing minimization step: 3433. Total energy = 6881.0189 kcal/mol (6876.9997 without restraints) Performing minimization step: 3434. Total energy = 6876.9865 kcal/mol (6872.9688 without restraints) Performing minimization step: 3435. Total energy = 6872.9595 kcal/mol (6868.9432 without restraints) Performing minimization step: 3436. Total energy = 6868.9380 kcal/mol (6864.9232 without restraints) Performing minimization step: 3437. Total energy = 6864.9220 kcal/mol (6860.9086 without restraints) Performing minimization step: 3438. Total energy = 6860.9113 kcal/mol (6856.8993 without restraints) Performing minimization step: 3439. Total energy = 6856.9064 kcal/mol (6852.8958 without restraints) Performing minimization step: 3440. Total energy = 6852.9070 kcal/mol (6848.8979 without restraints) Performing minimization step: 3441. Total energy = 6848.9133 kcal/mol (6844.9057 without restraints) Performing minimization step: 3442. Total energy = 6844.9253 kcal/mol (6840.9190 without restraints) Performing minimization step: 3443. Total energy = 6840.9430 kcal/mol (6836.9382 without restraints) Performing minimization step: 3444. Total energy = 6836.9667 kcal/mol (6832.9634 without restraints) Performing minimization step: 3445. Total energy = 6832.9959 kcal/mol (6828.9941 without restraints) Performing minimization step: 3446. Total energy = 6829.0310 kcal/mol (6825.0306 without restraints) Performing minimization step: 3447. Total energy = 6825.0719 kcal/mol (6821.0730 without restraints) Performing minimization step: 3448. Total energy = 6821.1187 kcal/mol (6817.1213 without restraints) Performing minimization step: 3449. Total energy = 6817.1716 kcal/mol (6813.1757 without restraints) Performing minimization step: 3450. Total energy = 6813.2303 kcal/mol (6809.2358 without restraints) Performing minimization step: 3451. Total energy = 6809.2949 kcal/mol (6805.3018 without restraints) Performing minimization step: 3452. Total energy = 6805.3658 kcal/mol (6801.3743 without restraints) Performing minimization step: 3453. Total energy = 6801.4423 kcal/mol (6797.4523 without restraints) Performing minimization step: 3454. Total energy = 6797.5255 kcal/mol (6793.5370 without restraints) Performing minimization step: 3455. Total energy = 6793.6146 kcal/mol (6789.6275 without restraints) Performing minimization step: 3456. Total energy = 6789.7095 kcal/mol (6785.7239 without restraints) Performing minimization step: 3457. Total energy = 6785.8107 kcal/mol (6781.8267 without restraints) Performing minimization step: 3458. Total energy = 6781.9182 kcal/mol (6777.9357 without restraints) Performing minimization step: 3459. Total energy = 6778.0322 kcal/mol (6774.0512 without restraints) Performing minimization step: 3460. Total energy = 6774.1521 kcal/mol (6770.1725 without restraints) Performing minimization step: 3461. Total energy = 6770.2781 kcal/mol (6766.3001 without restraints) Performing minimization step: 3462. Total energy = 6766.4107 kcal/mol (6762.4341 without restraints) Performing minimization step: 3463. Total energy = 6762.5496 kcal/mol (6758.5746 without restraints) Performing minimization step: 3464. Total energy = 6758.6949 kcal/mol (6754.7214 without restraints) Performing minimization step: 3465. Total energy = 6754.8465 kcal/mol (6750.8745 without restraints) Performing minimization step: 3466. Total energy = 6751.0046 kcal/mol (6747.0341 without restraints) Performing minimization step: 3467. Total energy = 6747.1691 kcal/mol (6743.2002 without restraints) Performing minimization step: 3468. Total energy = 6743.3400 kcal/mol (6739.3725 without restraints) Performing minimization step: 3469. Total energy = 6739.5174 kcal/mol (6735.5516 without restraints) Performing minimization step: 3470. Total energy = 6735.7012 kcal/mol (6731.7369 without restraints) Performing minimization step: 3471. Total energy = 6731.8917 kcal/mol (6727.9289 without restraints) Performing minimization step: 3472. Total energy = 6728.0887 kcal/mol (6724.1274 without restraints) Performing minimization step: 3473. Total energy = 6724.2923 kcal/mol (6720.3326 without restraints) Performing minimization step: 3474. Total energy = 6720.5026 kcal/mol (6716.5443 without restraints) Performing minimization step: 3475. Total energy = 6716.7194 kcal/mol (6712.7627 without restraints) Performing minimization step: 3476. Total energy = 6712.9428 kcal/mol (6708.9876 without restraints) Performing minimization step: 3477. Total energy = 6709.1728 kcal/mol (6705.2192 without restraints) Performing minimization step: 3478. Total energy = 6705.4096 kcal/mol (6701.4576 without restraints) Performing minimization step: 3479. Total energy = 6701.6529 kcal/mol (6697.7024 without restraints) Performing minimization step: 3480. Total energy = 6697.9031 kcal/mol (6693.9541 without restraints) Performing minimization step: 3481. Total energy = 6694.1600 kcal/mol (6690.2126 without restraints) Performing minimization step: 3482. Total energy = 6690.4238 kcal/mol (6686.4780 without restraints) Performing minimization step: 3483. Total energy = 6686.6941 kcal/mol (6682.7498 without restraints) Performing minimization step: 3484. Total energy = 6682.9711 kcal/mol (6679.0283 without restraints) Performing minimization step: 3485. Total energy = 6679.2551 kcal/mol (6675.3139 without restraints) Performing minimization step: 3486. Total energy = 6675.5458 kcal/mol (6671.6062 without restraints) Performing minimization step: 3487. Total energy = 6671.8433 kcal/mol (6667.9052 without restraints) Performing minimization step: 3488. Total energy = 6668.1478 kcal/mol (6664.2112 without restraints) Performing minimization step: 3489. Total energy = 6664.4591 kcal/mol (6660.5241 without restraints) Performing minimization step: 3490. Total energy = 6660.7770 kcal/mol (6656.8436 without restraints) Performing minimization step: 3491. Total energy = 6657.1018 kcal/mol (6653.1699 without restraints) Performing minimization step: 3492. Total energy = 6653.4333 kcal/mol (6649.5029 without restraints) Performing minimization step: 3493. Total energy = 6649.7717 kcal/mol (6645.8430 without restraints) Performing minimization step: 3494. Total energy = 6646.1170 kcal/mol (6642.1899 without restraints) Performing minimization step: 3495. Total energy = 6642.4694 kcal/mol (6638.5439 without restraints) Performing minimization step: 3496. Total energy = 6638.8288 kcal/mol (6634.9048 without restraints) Performing minimization step: 3497. Total energy = 6635.1948 kcal/mol (6631.2723 without restraints) Performing minimization step: 3498. Total energy = 6631.5677 kcal/mol (6627.6468 without restraints) Performing minimization step: 3499. Total energy = 6627.9472 kcal/mol (6624.0277 without restraints) Performing minimization step: 3500. Total energy = 6624.3339 kcal/mol (6620.4162 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 6620.7275 kcal/mol (6616.8113 without restraints) Performing minimization step: 3502. Total energy = 6617.1280 kcal/mol (6613.2133 without restraints) Performing minimization step: 3503. Total energy = 6613.5355 kcal/mol (6609.6224 without restraints) Performing minimization step: 3504. Total energy = 6609.9497 kcal/mol (6606.0382 without restraints) Performing minimization step: 3505. Total energy = 6606.3712 kcal/mol (6602.4614 without restraints) Performing minimization step: 3506. Total energy = 6602.7996 kcal/mol (6598.8912 without restraints) Performing minimization step: 3507. Total energy = 6599.2349 kcal/mol (6595.3281 without restraints) Performing minimization step: 3508. Total energy = 6595.6771 kcal/mol (6591.7719 without restraints) Performing minimization step: 3509. Total energy = 6592.1265 kcal/mol (6588.2228 without restraints) Performing minimization step: 3510. Total energy = 6588.5826 kcal/mol (6584.6805 without restraints) Performing minimization step: 3511. Total energy = 6585.0457 kcal/mol (6581.1452 without restraints) Performing minimization step: 3512. Total energy = 6581.5154 kcal/mol (6577.6164 without restraints) Performing minimization step: 3513. Total energy = 6577.9925 kcal/mol (6574.0951 without restraints) Performing minimization step: 3514. Total energy = 6574.4765 kcal/mol (6570.5806 without restraints) Performing minimization step: 3515. Total energy = 6570.9672 kcal/mol (6567.0729 without restraints) Performing minimization step: 3516. Total energy = 6567.4651 kcal/mol (6563.5724 without restraints) Performing minimization step: 3517. Total energy = 6563.9699 kcal/mol (6560.0788 without restraints) Performing minimization step: 3518. Total energy = 6560.4817 kcal/mol (6556.5922 without restraints) Performing minimization step: 3519. Total energy = 6557.0005 kcal/mol (6553.1125 without restraints) Performing minimization step: 3520. Total energy = 6553.5264 kcal/mol (6549.6399 without restraints) Performing minimization step: 3521. Total energy = 6550.0593 kcal/mol (6546.1744 without restraints) Performing minimization step: 3522. Total energy = 6546.5986 kcal/mol (6542.7152 without restraints) Performing minimization step: 3523. Total energy = 6543.1450 kcal/mol (6539.2633 without restraints) Performing minimization step: 3524. Total energy = 6539.6986 kcal/mol (6535.8185 without restraints) Performing minimization step: 3525. Total energy = 6536.2592 kcal/mol (6532.3806 without restraints) Performing minimization step: 3526. Total energy = 6532.8269 kcal/mol (6528.9500 without restraints) Performing minimization step: 3527. Total energy = 6529.4017 kcal/mol (6525.5262 without restraints) Performing minimization step: 3528. Total energy = 6525.9830 kcal/mol (6522.1091 without restraints) Performing minimization step: 3529. Total energy = 6522.5713 kcal/mol (6518.6990 without restraints) Performing minimization step: 3530. Total energy = 6519.1666 kcal/mol (6515.2958 without restraints) Performing minimization step: 3531. Total energy = 6515.7686 kcal/mol (6511.8994 without restraints) Performing minimization step: 3532. Total energy = 6512.3777 kcal/mol (6508.5101 without restraints) Performing minimization step: 3533. Total energy = 6508.9938 kcal/mol (6505.1277 without restraints) Performing minimization step: 3534. Total energy = 6505.6168 kcal/mol (6501.7522 without restraints) Performing minimization step: 3535. Total energy = 6502.2472 kcal/mol (6498.3843 without restraints) Performing minimization step: 3536. Total energy = 6498.8842 kcal/mol (6495.0228 without restraints) Performing minimization step: 3537. Total energy = 6495.5282 kcal/mol (6491.6684 without restraints) Performing minimization step: 3538. Total energy = 6492.1790 kcal/mol (6488.3206 without restraints) Performing minimization step: 3539. Total energy = 6488.8368 kcal/mol (6484.9800 without restraints) Performing minimization step: 3540. Total energy = 6485.5013 kcal/mol (6481.6461 without restraints) Performing minimization step: 3541. Total energy = 6482.1727 kcal/mol (6478.3191 without restraints) Performing minimization step: 3542. Total energy = 6478.8510 kcal/mol (6474.9990 without restraints) Performing minimization step: 3543. Total energy = 6475.5365 kcal/mol (6471.6859 without restraints) Performing minimization step: 3544. Total energy = 6472.2287 kcal/mol (6468.3798 without restraints) Performing minimization step: 3545. Total energy = 6468.9277 kcal/mol (6465.0803 without restraints) Performing minimization step: 3546. Total energy = 6465.6338 kcal/mol (6461.7880 without restraints) Performing minimization step: 3547. Total energy = 6462.3465 kcal/mol (6458.5022 without restraints) Performing minimization step: 3548. Total energy = 6459.0661 kcal/mol (6455.2234 without restraints) Performing minimization step: 3549. Total energy = 6455.7930 kcal/mol (6451.9518 without restraints) Performing minimization step: 3550. Total energy = 6452.5263 kcal/mol (6448.6866 without restraints) Performing minimization step: 3551. Total energy = 6449.2669 kcal/mol (6445.4288 without restraints) Performing minimization step: 3552. Total energy = 6446.0140 kcal/mol (6442.1775 without restraints) Performing minimization step: 3553. Total energy = 6442.7679 kcal/mol (6438.9329 without restraints) Performing minimization step: 3554. Total energy = 6439.5284 kcal/mol (6435.6950 without restraints) Performing minimization step: 3555. Total energy = 6436.2960 kcal/mol (6432.4641 without restraints) Performing minimization step: 3556. Total energy = 6433.0704 kcal/mol (6429.2401 without restraints) Performing minimization step: 3557. Total energy = 6429.8517 kcal/mol (6426.0228 without restraints) Performing minimization step: 3558. Total energy = 6426.6397 kcal/mol (6422.8125 without restraints) Performing minimization step: 3559. Total energy = 6423.4346 kcal/mol (6419.6089 without restraints) Performing minimization step: 3560. Total energy = 6420.2367 kcal/mol (6416.4125 without restraints) Performing minimization step: 3561. Total energy = 6417.0454 kcal/mol (6413.2228 without restraints) Performing minimization step: 3562. Total energy = 6413.8607 kcal/mol (6410.0396 without restraints) Performing minimization step: 3563. Total energy = 6410.6830 kcal/mol (6406.8635 without restraints) Performing minimization step: 3564. Total energy = 6407.5117 kcal/mol (6403.6937 without restraints) Performing minimization step: 3565. Total energy = 6404.3469 kcal/mol (6400.5304 without restraints) Performing minimization step: 3566. Total energy = 6401.1893 kcal/mol (6397.3744 without restraints) Performing minimization step: 3567. Total energy = 6398.0386 kcal/mol (6394.2252 without restraints) Performing minimization step: 3568. Total energy = 6394.8944 kcal/mol (6391.0826 without restraints) Performing minimization step: 3569. Total energy = 6391.7571 kcal/mol (6387.9468 without restraints) Performing minimization step: 3570. Total energy = 6388.6267 kcal/mol (6384.8179 without restraints) Performing minimization step: 3571. Total energy = 6385.5029 kcal/mol (6381.6957 without restraints) Performing minimization step: 3572. Total energy = 6382.3859 kcal/mol (6378.5801 without restraints) Performing minimization step: 3573. Total energy = 6379.2759 kcal/mol (6375.4717 without restraints) Performing minimization step: 3574. Total energy = 6376.1721 kcal/mol (6372.3695 without restraints) Performing minimization step: 3575. Total energy = 6373.0751 kcal/mol (6369.2740 without restraints) Performing minimization step: 3576. Total energy = 6369.9848 kcal/mol (6366.1852 without restraints) Performing minimization step: 3577. Total energy = 6366.9012 kcal/mol (6363.1031 without restraints) Performing minimization step: 3578. Total energy = 6363.8241 kcal/mol (6360.0276 without restraints) Performing minimization step: 3579. Total energy = 6360.7536 kcal/mol (6356.9585 without restraints) Performing minimization step: 3580. Total energy = 6357.6897 kcal/mol (6353.8962 without restraints) Performing minimization step: 3581. Total energy = 6354.6326 kcal/mol (6350.8406 without restraints) Performing minimization step: 3582. Total energy = 6351.5814 kcal/mol (6347.7909 without restraints) Performing minimization step: 3583. Total energy = 6348.5380 kcal/mol (6344.7490 without restraints) Performing minimization step: 3584. Total energy = 6345.5010 kcal/mol (6341.7135 without restraints) Performing minimization step: 3585. Total energy = 6342.4706 kcal/mol (6338.6847 without restraints) Performing minimization step: 3586. Total energy = 6339.4470 kcal/mol (6335.6626 without restraints) Performing minimization step: 3587. Total energy = 6336.4298 kcal/mol (6332.6469 without restraints) Performing minimization step: 3588. Total energy = 6333.4191 kcal/mol (6329.6377 without restraints) Performing minimization step: 3589. Total energy = 6330.4151 kcal/mol (6326.6353 without restraints) Performing minimization step: 3590. Total energy = 6327.4179 kcal/mol (6323.6396 without restraints) Performing minimization step: 3591. Total energy = 6324.4271 kcal/mol (6320.6503 without restraints) Performing minimization step: 3592. Total energy = 6321.4428 kcal/mol (6317.6676 without restraints) Performing minimization step: 3593. Total energy = 6318.4651 kcal/mol (6314.6913 without restraints) Performing minimization step: 3594. Total energy = 6315.4941 kcal/mol (6311.7219 without restraints) Performing minimization step: 3595. Total energy = 6312.5293 kcal/mol (6308.7586 without restraints) Performing minimization step: 3596. Total energy = 6309.5714 kcal/mol (6305.8023 without restraints) Performing minimization step: 3597. Total energy = 6306.6201 kcal/mol (6302.8525 without restraints) Performing minimization step: 3598. Total energy = 6303.6753 kcal/mol (6299.9091 without restraints) Performing minimization step: 3599. Total energy = 6300.7370 kcal/mol (6296.9723 without restraints) Performing minimization step: 3600. Total energy = 6297.8050 kcal/mol (6294.0418 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 6294.8796 kcal/mol (6291.1179 without restraints) Performing minimization step: 3602. Total energy = 6291.9604 kcal/mol (6288.2001 without restraints) Performing minimization step: 3603. Total energy = 6289.0477 kcal/mol (6285.2891 without restraints) Performing minimization step: 3604. Total energy = 6286.1417 kcal/mol (6282.3845 without restraints) Performing minimization step: 3605. Total energy = 6283.2422 kcal/mol (6279.4865 without restraints) Performing minimization step: 3606. Total energy = 6280.3491 kcal/mol (6276.5949 without restraints) Performing minimization step: 3607. Total energy = 6277.4623 kcal/mol (6273.7096 without restraints) Performing minimization step: 3608. Total energy = 6274.5820 kcal/mol (6270.8308 without restraints) Performing minimization step: 3609. Total energy = 6271.7079 kcal/mol (6267.9582 without restraints) Performing minimization step: 3610. Total energy = 6268.8403 kcal/mol (6265.0920 without restraints) Performing minimization step: 3611. Total energy = 6265.9790 kcal/mol (6262.2322 without restraints) Performing minimization step: 3612. Total energy = 6263.1239 kcal/mol (6259.3786 without restraints) Performing minimization step: 3613. Total energy = 6260.2755 kcal/mol (6256.5318 without restraints) Performing minimization step: 3614. Total energy = 6257.4330 kcal/mol (6253.6907 without restraints) Performing minimization step: 3615. Total energy = 6254.5973 kcal/mol (6250.8565 without restraints) Performing minimization step: 3616. Total energy = 6251.7684 kcal/mol (6248.0291 without restraints) Performing minimization step: 3617. Total energy = 6248.9451 kcal/mol (6245.2073 without restraints) Performing minimization step: 3618. Total energy = 6246.1282 kcal/mol (6242.3918 without restraints) Performing minimization step: 3619. Total energy = 6243.3175 kcal/mol (6239.5827 without restraints) Performing minimization step: 3620. Total energy = 6240.5131 kcal/mol (6236.7798 without restraints) Performing minimization step: 3621. Total energy = 6237.7150 kcal/mol (6233.9831 without restraints) Performing minimization step: 3622. Total energy = 6234.9231 kcal/mol (6231.1927 without restraints) Performing minimization step: 3623. Total energy = 6232.1375 kcal/mol (6228.4085 without restraints) Performing minimization step: 3624. Total energy = 6229.3583 kcal/mol (6225.6308 without restraints) Performing minimization step: 3625. Total energy = 6226.5852 kcal/mol (6222.8591 without restraints) Performing minimization step: 3626. Total energy = 6223.8181 kcal/mol (6220.0936 without restraints) Performing minimization step: 3627. Total energy = 6221.0573 kcal/mol (6217.3343 without restraints) Performing minimization step: 3628. Total energy = 6218.3027 kcal/mol (6214.5812 without restraints) Performing minimization step: 3629. Total energy = 6215.5543 kcal/mol (6211.8342 without restraints) Performing minimization step: 3630. Total energy = 6212.8117 kcal/mol (6209.0931 without restraints) Performing minimization step: 3631. Total energy = 6210.0756 kcal/mol (6206.3584 without restraints) Performing minimization step: 3632. Total energy = 6207.3455 kcal/mol (6203.6298 without restraints) Performing minimization step: 3633. Total energy = 6204.6217 kcal/mol (6200.9075 without restraints) Performing minimization step: 3634. Total energy = 6201.9043 kcal/mol (6198.1915 without restraints) Performing minimization step: 3635. Total energy = 6199.1928 kcal/mol (6195.4815 without restraints) Performing minimization step: 3636. Total energy = 6196.4874 kcal/mol (6192.7776 without restraints) Performing minimization step: 3637. Total energy = 6193.7881 kcal/mol (6190.0797 without restraints) Performing minimization step: 3638. Total energy = 6191.0945 kcal/mol (6187.3874 without restraints) Performing minimization step: 3639. Total energy = 6188.4069 kcal/mol (6184.7015 without restraints) Performing minimization step: 3640. Total energy = 6185.7256 kcal/mol (6182.0215 without restraints) Performing minimization step: 3641. Total energy = 6183.0501 kcal/mol (6179.3475 without restraints) Performing minimization step: 3642. Total energy = 6180.3808 kcal/mol (6176.6796 without restraints) Performing minimization step: 3643. Total energy = 6177.7173 kcal/mol (6174.0175 without restraints) Performing minimization step: 3644. Total energy = 6175.0599 kcal/mol (6171.3616 without restraints) Performing minimization step: 3645. Total energy = 6172.4084 kcal/mol (6168.7115 without restraints) Performing minimization step: 3646. Total energy = 6169.7627 kcal/mol (6166.0673 without restraints) Performing minimization step: 3647. Total energy = 6167.1228 kcal/mol (6163.4288 without restraints) Performing minimization step: 3648. Total energy = 6164.4892 kcal/mol (6160.7966 without restraints) Performing minimization step: 3649. Total energy = 6161.8612 kcal/mol (6158.1701 without restraints) Performing minimization step: 3650. Total energy = 6159.2398 kcal/mol (6155.5502 without restraints) Performing minimization step: 3651. Total energy = 6156.6236 kcal/mol (6152.9353 without restraints) Performing minimization step: 3652. Total energy = 6154.0133 kcal/mol (6150.3265 without restraints) Performing minimization step: 3653. Total energy = 6151.4088 kcal/mol (6147.7234 without restraints) Performing minimization step: 3654. Total energy = 6148.8102 kcal/mol (6145.1262 without restraints) Performing minimization step: 3655. Total energy = 6146.2173 kcal/mol (6142.5348 without restraints) Performing minimization step: 3656. Total energy = 6143.6309 kcal/mol (6139.9498 without restraints) Performing minimization step: 3657. Total energy = 6141.0496 kcal/mol (6137.3700 without restraints) Performing minimization step: 3658. Total energy = 6138.4741 kcal/mol (6134.7959 without restraints) Performing minimization step: 3659. Total energy = 6135.9045 kcal/mol (6132.2277 without restraints) Performing minimization step: 3660. Total energy = 6133.3405 kcal/mol (6129.6651 without restraints) Performing minimization step: 3661. Total energy = 6130.7820 kcal/mol (6127.1080 without restraints) Performing minimization step: 3662. Total energy = 6128.2294 kcal/mol (6124.5568 without restraints) Performing minimization step: 3663. Total energy = 6125.6824 kcal/mol (6122.0113 without restraints) Performing minimization step: 3664. Total energy = 6123.1412 kcal/mol (6119.4714 without restraints) Performing minimization step: 3665. Total energy = 6120.6055 kcal/mol (6116.9372 without restraints) Performing minimization step: 3666. Total energy = 6118.0754 kcal/mol (6114.4084 without restraints) Performing minimization step: 3667. Total energy = 6115.5508 kcal/mol (6111.8853 without restraints) Performing minimization step: 3668. Total energy = 6113.0321 kcal/mol (6109.3680 without restraints) Performing minimization step: 3669. Total energy = 6110.5190 kcal/mol (6106.8563 without restraints) Performing minimization step: 3670. Total energy = 6108.0114 kcal/mol (6104.3501 without restraints) Performing minimization step: 3671. Total energy = 6105.5095 kcal/mol (6101.8495 without restraints) Performing minimization step: 3672. Total energy = 6103.0130 kcal/mol (6099.3545 without restraints) Performing minimization step: 3673. Total energy = 6100.5220 kcal/mol (6096.8649 without restraints) Performing minimization step: 3674. Total energy = 6098.0367 kcal/mol (6094.3809 without restraints) Performing minimization step: 3675. Total energy = 6095.5568 kcal/mol (6091.9024 without restraints) Performing minimization step: 3676. Total energy = 6093.0823 kcal/mol (6089.4294 without restraints) Performing minimization step: 3677. Total energy = 6090.6134 kcal/mol (6086.9617 without restraints) Performing minimization step: 3678. Total energy = 6088.1498 kcal/mol (6084.4996 without restraints) Performing minimization step: 3679. Total energy = 6085.6917 kcal/mol (6082.0429 without restraints) Performing minimization step: 3680. Total energy = 6083.2393 kcal/mol (6079.5919 without restraints) Performing minimization step: 3681. Total energy = 6080.7921 kcal/mol (6077.1461 without restraints) Performing minimization step: 3682. Total energy = 6078.3501 kcal/mol (6074.7054 without restraints) Performing minimization step: 3683. Total energy = 6075.9137 kcal/mol (6072.2704 without restraints) Performing minimization step: 3684. Total energy = 6073.4825 kcal/mol (6069.8406 without restraints) Performing minimization step: 3685. Total energy = 6071.0570 kcal/mol (6067.4165 without restraints) Performing minimization step: 3686. Total energy = 6068.6369 kcal/mol (6064.9978 without restraints) Performing minimization step: 3687. Total energy = 6066.2217 kcal/mol (6062.5840 without restraints) Performing minimization step: 3688. Total energy = 6063.8122 kcal/mol (6060.1757 without restraints) Performing minimization step: 3689. Total energy = 6061.4076 kcal/mol (6057.7725 without restraints) Performing minimization step: 3690. Total energy = 6059.0082 kcal/mol (6055.3745 without restraints) Performing minimization step: 3691. Total energy = 6056.6146 kcal/mol (6052.9822 without restraints) Performing minimization step: 3692. Total energy = 6054.2256 kcal/mol (6050.5944 without restraints) Performing minimization step: 3693. Total energy = 6051.8418 kcal/mol (6048.2121 without restraints) Performing minimization step: 3694. Total energy = 6049.4633 kcal/mol (6045.8350 without restraints) Performing minimization step: 3695. Total energy = 6047.0900 kcal/mol (6043.4631 without restraints) Performing minimization step: 3696. Total energy = 6044.7216 kcal/mol (6041.0959 without restraints) Performing minimization step: 3697. Total energy = 6042.3585 kcal/mol (6038.7343 without restraints) Performing minimization step: 3698. Total energy = 6040.0007 kcal/mol (6036.3778 without restraints) Performing minimization step: 3699. Total energy = 6037.6480 kcal/mol (6034.0264 without restraints) Performing minimization step: 3700. Total energy = 6035.3006 kcal/mol (6031.6804 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 6032.9580 kcal/mol (6029.3392 without restraints) Performing minimization step: 3702. Total energy = 6030.6206 kcal/mol (6027.0030 without restraints) Performing minimization step: 3703. Total energy = 6028.2881 kcal/mol (6024.6720 without restraints) Performing minimization step: 3704. Total energy = 6025.9607 kcal/mol (6022.3459 without restraints) Performing minimization step: 3705. Total energy = 6023.6384 kcal/mol (6020.0249 without restraints) Performing minimization step: 3706. Total energy = 6021.3210 kcal/mol (6017.7088 without restraints) Performing minimization step: 3707. Total energy = 6019.0088 kcal/mol (6015.3980 without restraints) Performing minimization step: 3708. Total energy = 6016.7014 kcal/mol (6013.0919 without restraints) Performing minimization step: 3709. Total energy = 6014.3988 kcal/mol (6010.7906 without restraints) Performing minimization step: 3710. Total energy = 6012.1012 kcal/mol (6008.4944 without restraints) Performing minimization step: 3711. Total energy = 6009.8086 kcal/mol (6006.2030 without restraints) Performing minimization step: 3712. Total energy = 6007.5210 kcal/mol (6003.9168 without restraints) Performing minimization step: 3713. Total energy = 6005.2383 kcal/mol (6001.6354 without restraints) Performing minimization step: 3714. Total energy = 6002.9601 kcal/mol (5999.3585 without restraints) Performing minimization step: 3715. Total energy = 6000.6869 kcal/mol (5997.0866 without restraints) Performing minimization step: 3716. Total energy = 5998.4188 kcal/mol (5994.8199 without restraints) Performing minimization step: 3717. Total energy = 5996.1554 kcal/mol (5992.5577 without restraints) Performing minimization step: 3718. Total energy = 5993.8969 kcal/mol (5990.3007 without restraints) Performing minimization step: 3719. Total energy = 5991.6431 kcal/mol (5988.0481 without restraints) Performing minimization step: 3720. Total energy = 5989.3940 kcal/mol (5985.8003 without restraints) Performing minimization step: 3721. Total energy = 5987.1498 kcal/mol (5983.5573 without restraints) Performing minimization step: 3722. Total energy = 5984.9104 kcal/mol (5981.3193 without restraints) Performing minimization step: 3723. Total energy = 5982.6757 kcal/mol (5979.0859 without restraints) Performing minimization step: 3724. Total energy = 5980.4457 kcal/mol (5976.8573 without restraints) Performing minimization step: 3725. Total energy = 5978.2204 kcal/mol (5974.6332 without restraints) Performing minimization step: 3726. Total energy = 5975.9994 kcal/mol (5972.4135 without restraints) Performing minimization step: 3727. Total energy = 5973.7833 kcal/mol (5970.1987 without restraints) Performing minimization step: 3728. Total energy = 5971.5718 kcal/mol (5967.9885 without restraints) Performing minimization step: 3729. Total energy = 5969.3650 kcal/mol (5965.7829 without restraints) Performing minimization step: 3730. Total energy = 5967.1628 kcal/mol (5963.5820 without restraints) Performing minimization step: 3731. Total energy = 5964.9651 kcal/mol (5961.3856 without restraints) Performing minimization step: 3732. Total energy = 5962.7721 kcal/mol (5959.1939 without restraints) Performing minimization step: 3733. Total energy = 5960.5837 kcal/mol (5957.0069 without restraints) Performing minimization step: 3734. Total energy = 5958.3999 kcal/mol (5954.8243 without restraints) Performing minimization step: 3735. Total energy = 5956.2206 kcal/mol (5952.6462 without restraints) Performing minimization step: 3736. Total energy = 5954.0458 kcal/mol (5950.4727 without restraints) Performing minimization step: 3737. Total energy = 5951.8755 kcal/mol (5948.3036 without restraints) Performing minimization step: 3738. Total energy = 5949.7098 kcal/mol (5946.1392 without restraints) Performing minimization step: 3739. Total energy = 5947.5484 kcal/mol (5943.9791 without restraints) Performing minimization step: 3740. Total energy = 5945.3915 kcal/mol (5941.8235 without restraints) Performing minimization step: 3741. Total energy = 5943.2389 kcal/mol (5939.6721 without restraints) Performing minimization step: 3742. Total energy = 5941.0905 kcal/mol (5937.5250 without restraints) Performing minimization step: 3743. Total energy = 5938.9470 kcal/mol (5935.3827 without restraints) Performing minimization step: 3744. Total energy = 5936.8076 kcal/mol (5933.2446 without restraints) Performing minimization step: 3745. Total energy = 5934.6727 kcal/mol (5931.1110 without restraints) Performing minimization step: 3746. Total energy = 5932.5425 kcal/mol (5928.9821 without restraints) Performing minimization step: 3747. Total energy = 5930.4164 kcal/mol (5926.8572 without restraints) Performing minimization step: 3748. Total energy = 5928.2948 kcal/mol (5924.7370 without restraints) Performing minimization step: 3749. Total energy = 5926.1775 kcal/mol (5922.6208 without restraints) Performing minimization step: 3750. Total energy = 5924.0641 kcal/mol (5920.5087 without restraints) Performing minimization step: 3751. Total energy = 5921.9552 kcal/mol (5918.4010 without restraints) Performing minimization step: 3752. Total energy = 5919.8507 kcal/mol (5916.2977 without restraints) Performing minimization step: 3753. Total energy = 5917.7507 kcal/mol (5914.1989 without restraints) Performing minimization step: 3754. Total energy = 5915.6547 kcal/mol (5912.1042 without restraints) Performing minimization step: 3755. Total energy = 5913.5631 kcal/mol (5910.0139 without restraints) Performing minimization step: 3756. Total energy = 5911.4758 kcal/mol (5907.9279 without restraints) Performing minimization step: 3757. Total energy = 5909.3927 kcal/mol (5905.8460 without restraints) Performing minimization step: 3758. Total energy = 5907.3135 kcal/mol (5903.7679 without restraints) Performing minimization step: 3759. Total energy = 5905.2382 kcal/mol (5901.6942 without restraints) Performing minimization step: 3760. Total energy = 5903.1677 kcal/mol (5899.6246 without restraints) Performing minimization step: 3761. Total energy = 5901.1011 kcal/mol (5897.5593 without restraints) Performing minimization step: 3762. Total energy = 5899.0386 kcal/mol (5895.4980 without restraints) Performing minimization step: 3763. Total energy = 5896.9804 kcal/mol (5893.4410 without restraints) Performing minimization step: 3764. Total energy = 5894.9259 kcal/mol (5891.3878 without restraints) Performing minimization step: 3765. Total energy = 5892.8758 kcal/mol (5889.3389 without restraints) Performing minimization step: 3766. Total energy = 5890.8297 kcal/mol (5887.2940 without restraints) Performing minimization step: 3767. Total energy = 5888.7879 kcal/mol (5885.2535 without restraints) Performing minimization step: 3768. Total energy = 5886.7500 kcal/mol (5883.2168 without restraints) Performing minimization step: 3769. Total energy = 5884.7163 kcal/mol (5881.1843 without restraints) Performing minimization step: 3770. Total energy = 5882.6866 kcal/mol (5879.1559 without restraints) Performing minimization step: 3771. Total energy = 5880.6609 kcal/mol (5877.1313 without restraints) Performing minimization step: 3772. Total energy = 5878.6391 kcal/mol (5875.1107 without restraints) Performing minimization step: 3773. Total energy = 5876.6211 kcal/mol (5873.0937 without restraints) Performing minimization step: 3774. Total energy = 5874.6073 kcal/mol (5871.0813 without restraints) Performing minimization step: 3775. Total energy = 5872.5973 kcal/mol (5869.0725 without restraints) Performing minimization step: 3776. Total energy = 5870.5912 kcal/mol (5867.0676 without restraints) Performing minimization step: 3777. Total energy = 5868.5887 kcal/mol (5865.0663 without restraints) Performing minimization step: 3778. Total energy = 5866.5906 kcal/mol (5863.0694 without restraints) Performing minimization step: 3779. Total energy = 5864.5964 kcal/mol (5861.0764 without restraints) Performing minimization step: 3780. Total energy = 5862.6061 kcal/mol (5859.0873 without restraints) Performing minimization step: 3781. Total energy = 5860.6197 kcal/mol (5857.1021 without restraints) Performing minimization step: 3782. Total energy = 5858.6371 kcal/mol (5855.1207 without restraints) Performing minimization step: 3783. Total energy = 5856.6588 kcal/mol (5853.1436 without restraints) Performing minimization step: 3784. Total energy = 5854.6841 kcal/mol (5851.1701 without restraints) Performing minimization step: 3785. Total energy = 5852.7131 kcal/mol (5849.2003 without restraints) Performing minimization step: 3786. Total energy = 5850.7457 kcal/mol (5847.2341 without restraints) Performing minimization step: 3787. Total energy = 5848.7823 kcal/mol (5845.2718 without restraints) Performing minimization step: 3788. Total energy = 5846.8227 kcal/mol (5843.3134 without restraints) Performing minimization step: 3789. Total energy = 5844.8669 kcal/mol (5841.3588 without restraints) Performing minimization step: 3790. Total energy = 5842.9149 kcal/mol (5839.4080 without restraints) Performing minimization step: 3791. Total energy = 5840.9666 kcal/mol (5837.4608 without restraints) Performing minimization step: 3792. Total energy = 5839.0218 kcal/mol (5835.5173 without restraints) Performing minimization step: 3793. Total energy = 5837.0810 kcal/mol (5833.5776 without restraints) Performing minimization step: 3794. Total energy = 5835.1441 kcal/mol (5831.6419 without restraints) Performing minimization step: 3795. Total energy = 5833.2104 kcal/mol (5829.7092 without restraints) Performing minimization step: 3796. Total energy = 5831.2805 kcal/mol (5827.7806 without restraints) Performing minimization step: 3797. Total energy = 5829.3547 kcal/mol (5825.8560 without restraints) Performing minimization step: 3798. Total energy = 5827.4323 kcal/mol (5823.9348 without restraints) Performing minimization step: 3799. Total energy = 5825.5137 kcal/mol (5822.0174 without restraints) Performing minimization step: 3800. Total energy = 5823.5985 kcal/mol (5820.1032 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 5821.6870 kcal/mol (5818.1929 without restraints) Performing minimization step: 3802. Total energy = 5819.7790 kcal/mol (5816.2861 without restraints) Performing minimization step: 3803. Total energy = 5817.8747 kcal/mol (5814.3830 without restraints) Performing minimization step: 3804. Total energy = 5815.9741 kcal/mol (5812.4836 without restraints) Performing minimization step: 3805. Total energy = 5814.0771 kcal/mol (5810.5876 without restraints) Performing minimization step: 3806. Total energy = 5812.1840 kcal/mol (5808.6957 without restraints) Performing minimization step: 3807. Total energy = 5810.2941 kcal/mol (5806.8070 without restraints) Performing minimization step: 3808. Total energy = 5808.4080 kcal/mol (5804.9220 without restraints) Performing minimization step: 3809. Total energy = 5806.5251 kcal/mol (5803.0403 without restraints) Performing minimization step: 3810. Total energy = 5804.6460 kcal/mol (5801.1623 without restraints) Performing minimization step: 3811. Total energy = 5802.7702 kcal/mol (5799.2876 without restraints) Performing minimization step: 3812. Total energy = 5800.8979 kcal/mol (5797.4165 without restraints) Performing minimization step: 3813. Total energy = 5799.0291 kcal/mol (5795.5488 without restraints) Performing minimization step: 3814. Total energy = 5797.1636 kcal/mol (5793.6844 without restraints) Performing minimization step: 3815. Total energy = 5795.3017 kcal/mol (5791.8237 without restraints) Performing minimization step: 3816. Total energy = 5793.4431 kcal/mol (5789.9663 without restraints) Performing minimization step: 3817. Total energy = 5791.5882 kcal/mol (5788.1125 without restraints) Performing minimization step: 3818. Total energy = 5789.7366 kcal/mol (5786.2619 without restraints) Performing minimization step: 3819. Total energy = 5787.8884 kcal/mol (5784.4151 without restraints) Performing minimization step: 3820. Total energy = 5786.0441 kcal/mol (5782.5718 without restraints) Performing minimization step: 3821. Total energy = 5784.2028 kcal/mol (5780.7317 without restraints) Performing minimization step: 3822. Total energy = 5782.3651 kcal/mol (5778.8951 without restraints) Performing minimization step: 3823. Total energy = 5780.5307 kcal/mol (5777.0620 without restraints) Performing minimization step: 3824. Total energy = 5778.7002 kcal/mol (5775.2324 without restraints) Performing minimization step: 3825. Total energy = 5776.8724 kcal/mol (5773.4057 without restraints) Performing minimization step: 3826. Total energy = 5775.0482 kcal/mol (5771.5827 without restraints) Performing minimization step: 3827. Total energy = 5773.2271 kcal/mol (5769.7627 without restraints) Performing minimization step: 3828. Total energy = 5771.4094 kcal/mol (5767.9462 without restraints) Performing minimization step: 3829. Total energy = 5769.5950 kcal/mol (5766.1328 without restraints) Performing minimization step: 3830. Total energy = 5767.7840 kcal/mol (5764.3230 without restraints) Performing minimization step: 3831. Total energy = 5765.9762 kcal/mol (5762.5163 without restraints) Performing minimization step: 3832. Total energy = 5764.1718 kcal/mol (5760.7130 without restraints) Performing minimization step: 3833. Total energy = 5762.3703 kcal/mol (5758.9126 without restraints) Performing minimization step: 3834. Total energy = 5760.5722 kcal/mol (5757.1155 without restraints) Performing minimization step: 3835. Total energy = 5758.7776 kcal/mol (5755.3221 without restraints) Performing minimization step: 3836. Total energy = 5756.9861 kcal/mol (5753.5318 without restraints) Performing minimization step: 3837. Total energy = 5755.1979 kcal/mol (5751.7447 without restraints) Performing minimization step: 3838. Total energy = 5753.4129 kcal/mol (5749.9608 without restraints) Performing minimization step: 3839. Total energy = 5751.6313 kcal/mol (5748.1802 without restraints) Performing minimization step: 3840. Total energy = 5749.8527 kcal/mol (5746.4029 without restraints) Performing minimization step: 3841. Total energy = 5748.0774 kcal/mol (5744.6286 without restraints) Performing minimization step: 3842. Total energy = 5746.3051 kcal/mol (5742.8573 without restraints) Performing minimization step: 3843. Total energy = 5744.5360 kcal/mol (5741.0894 without restraints) Performing minimization step: 3844. Total energy = 5742.7701 kcal/mol (5739.3246 without restraints) Performing minimization step: 3845. Total energy = 5741.0074 kcal/mol (5737.5629 without restraints) Performing minimization step: 3846. Total energy = 5739.2478 kcal/mol (5735.8044 without restraints) Performing minimization step: 3847. Total energy = 5737.4915 kcal/mol (5734.0493 without restraints) Performing minimization step: 3848. Total energy = 5735.7382 kcal/mol (5732.2971 without restraints) Performing minimization step: 3849. Total energy = 5733.9882 kcal/mol (5730.5481 without restraints) Performing minimization step: 3850. Total energy = 5732.2409 kcal/mol (5728.8019 without restraints) Performing minimization step: 3851. Total energy = 5730.4967 kcal/mol (5727.0588 without restraints) Performing minimization step: 3852. Total energy = 5728.7558 kcal/mol (5725.3191 without restraints) Performing minimization step: 3853. Total energy = 5727.0185 kcal/mol (5723.5829 without restraints) Performing minimization step: 3854. Total energy = 5725.2838 kcal/mol (5721.8490 without restraints) Performing minimization step: 3855. Total energy = 5723.5519 kcal/mol (5720.1184 without restraints) Performing minimization step: 3856. Total energy = 5721.8231 kcal/mol (5718.3906 without restraints) Performing minimization step: 3857. Total energy = 5720.0975 kcal/mol (5716.6661 without restraints) Performing minimization step: 3858. Total energy = 5718.3750 kcal/mol (5714.9447 without restraints) Performing minimization step: 3859. Total energy = 5716.6555 kcal/mol (5713.2262 without restraints) Performing minimization step: 3860. Total energy = 5714.9393 kcal/mol (5711.5112 without restraints) Performing minimization step: 3861. Total energy = 5713.2258 kcal/mol (5709.7987 without restraints) Performing minimization step: 3862. Total energy = 5711.5151 kcal/mol (5708.0891 without restraints) Performing minimization step: 3863. Total energy = 5709.8075 kcal/mol (5706.3825 without restraints) Performing minimization step: 3864. Total energy = 5708.1030 kcal/mol (5704.6790 without restraints) Performing minimization step: 3865. Total energy = 5706.4013 kcal/mol (5702.9786 without restraints) Performing minimization step: 3866. Total energy = 5704.7028 kcal/mol (5701.2810 without restraints) Performing minimization step: 3867. Total energy = 5703.0071 kcal/mol (5699.5864 without restraints) Performing minimization step: 3868. Total energy = 5701.3143 kcal/mol (5697.8947 without restraints) Performing minimization step: 3869. Total energy = 5699.6244 kcal/mol (5696.2058 without restraints) Performing minimization step: 3870. Total energy = 5697.9375 kcal/mol (5694.5200 without restraints) Performing minimization step: 3871. Total energy = 5696.2534 kcal/mol (5692.8368 without restraints) Performing minimization step: 3872. Total energy = 5694.5722 kcal/mol (5691.1568 without restraints) Performing minimization step: 3873. Total energy = 5692.8940 kcal/mol (5689.4797 without restraints) Performing minimization step: 3874. Total energy = 5691.2187 kcal/mol (5687.8054 without restraints) Performing minimization step: 3875. Total energy = 5689.5464 kcal/mol (5686.1342 without restraints) Performing minimization step: 3876. Total energy = 5687.8769 kcal/mol (5684.4659 without restraints) Performing minimization step: 3877. Total energy = 5686.2108 kcal/mol (5682.8007 without restraints) Performing minimization step: 3878. Total energy = 5684.5475 kcal/mol (5681.1384 without restraints) Performing minimization step: 3879. Total energy = 5682.8865 kcal/mol (5679.4785 without restraints) Performing minimization step: 3880. Total energy = 5681.2285 kcal/mol (5677.8216 without restraints) Performing minimization step: 3881. Total energy = 5679.5732 kcal/mol (5676.1673 without restraints) Performing minimization step: 3882. Total energy = 5677.9205 kcal/mol (5674.5156 without restraints) Performing minimization step: 3883. Total energy = 5676.2709 kcal/mol (5672.8671 without restraints) Performing minimization step: 3884. Total energy = 5674.6239 kcal/mol (5671.2210 without restraints) Performing minimization step: 3885. Total energy = 5672.9797 kcal/mol (5669.5780 without restraints) Performing minimization step: 3886. Total energy = 5671.3384 kcal/mol (5667.9378 without restraints) Performing minimization step: 3887. Total energy = 5669.7002 kcal/mol (5666.3005 without restraints) Performing minimization step: 3888. Total energy = 5668.0645 kcal/mol (5664.6659 without restraints) Performing minimization step: 3889. Total energy = 5666.4318 kcal/mol (5663.0342 without restraints) Performing minimization step: 3890. Total energy = 5664.8014 kcal/mol (5661.4049 without restraints) Performing minimization step: 3891. Total energy = 5663.1740 kcal/mol (5659.7786 without restraints) Performing minimization step: 3892. Total energy = 5661.5491 kcal/mol (5658.1548 without restraints) Performing minimization step: 3893. Total energy = 5659.9272 kcal/mol (5656.5336 without restraints) Performing minimization step: 3894. Total energy = 5658.3078 kcal/mol (5654.9155 without restraints) Performing minimization step: 3895. Total energy = 5656.6912 kcal/mol (5653.2998 without restraints) Performing minimization step: 3896. Total energy = 5655.0773 kcal/mol (5651.6870 without restraints) Performing minimization step: 3897. Total energy = 5653.4664 kcal/mol (5650.0771 without restraints) Performing minimization step: 3898. Total energy = 5651.8581 kcal/mol (5648.4698 without restraints) Performing minimization step: 3899. Total energy = 5650.2528 kcal/mol (5646.8657 without restraints) Performing minimization step: 3900. Total energy = 5648.6499 kcal/mol (5645.2637 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 5647.0497 kcal/mol (5643.6647 without restraints) Performing minimization step: 3902. Total energy = 5645.4522 kcal/mol (5642.0681 without restraints) Performing minimization step: 3903. Total energy = 5643.8572 kcal/mol (5640.4741 without restraints) Performing minimization step: 3904. Total energy = 5642.2649 kcal/mol (5638.8829 without restraints) Performing minimization step: 3905. Total energy = 5640.6751 kcal/mol (5637.2940 without restraints) Performing minimization step: 3906. Total energy = 5639.0880 kcal/mol (5635.7079 without restraints) Performing minimization step: 3907. Total energy = 5637.5029 kcal/mol (5634.1238 without restraints) Performing minimization step: 3908. Total energy = 5635.9211 kcal/mol (5632.5432 without restraints) Performing minimization step: 3909. Total energy = 5634.3418 kcal/mol (5630.9648 without restraints) Performing minimization step: 3910. Total energy = 5632.7652 kcal/mol (5629.3892 without restraints) Performing minimization step: 3911. Total energy = 5631.1912 kcal/mol (5627.8162 without restraints) Performing minimization step: 3912. Total energy = 5629.6199 kcal/mol (5626.2460 without restraints) Performing minimization step: 3913. Total energy = 5628.0506 kcal/mol (5624.6776 without restraints) Performing minimization step: 3914. Total energy = 5626.4844 kcal/mol (5623.1124 without restraints) Performing minimization step: 3915. Total energy = 5624.9209 kcal/mol (5621.5499 without restraints) Performing minimization step: 3916. Total energy = 5623.3599 kcal/mol (5619.9901 without restraints) Performing minimization step: 3917. Total energy = 5621.8014 kcal/mol (5618.4325 without restraints) Performing minimization step: 3918. Total energy = 5620.2457 kcal/mol (5616.8777 without restraints) Performing minimization step: 3919. Total energy = 5618.6922 kcal/mol (5615.3252 without restraints) Performing minimization step: 3920. Total energy = 5617.1415 kcal/mol (5613.7755 without restraints) Performing minimization step: 3921. Total energy = 5615.5928 kcal/mol (5612.2279 without restraints) Performing minimization step: 3922. Total energy = 5614.0471 kcal/mol (5610.6832 without restraints) Performing minimization step: 3923. Total energy = 5612.5038 kcal/mol (5609.1410 without restraints) Performing minimization step: 3924. Total energy = 5610.9631 kcal/mol (5607.6011 without restraints) Performing minimization step: 3925. Total energy = 5609.4247 kcal/mol (5606.0638 without restraints) Performing minimization step: 3926. Total energy = 5607.8891 kcal/mol (5604.5291 without restraints) Performing minimization step: 3927. Total energy = 5606.3557 kcal/mol (5602.9967 without restraints) Performing minimization step: 3928. Total energy = 5604.8251 kcal/mol (5601.4671 without restraints) Performing minimization step: 3929. Total energy = 5603.2964 kcal/mol (5599.9393 without restraints) Performing minimization step: 3930. Total energy = 5601.7703 kcal/mol (5598.4143 without restraints) Performing minimization step: 3931. Total energy = 5600.2468 kcal/mol (5596.8918 without restraints) Performing minimization step: 3932. Total energy = 5598.7256 kcal/mol (5595.3715 without restraints) Performing minimization step: 3933. Total energy = 5597.2069 kcal/mol (5593.8539 without restraints) Performing minimization step: 3934. Total energy = 5595.6911 kcal/mol (5592.3390 without restraints) Performing minimization step: 3935. Total energy = 5594.1774 kcal/mol (5590.8262 without restraints) Performing minimization step: 3936. Total energy = 5592.6660 kcal/mol (5589.3159 without restraints) Performing minimization step: 3937. Total energy = 5591.1573 kcal/mol (5587.8081 without restraints) Performing minimization step: 3938. Total energy = 5589.6509 kcal/mol (5586.3028 without restraints) Performing minimization step: 3939. Total energy = 5588.1469 kcal/mol (5584.7997 without restraints) Performing minimization step: 3940. Total energy = 5586.6453 kcal/mol (5583.2991 without restraints) Performing minimization step: 3941. Total energy = 5585.1464 kcal/mol (5581.8012 without restraints) Performing minimization step: 3942. Total energy = 5583.6496 kcal/mol (5580.3054 without restraints) Performing minimization step: 3943. Total energy = 5582.1552 kcal/mol (5578.8119 without restraints) Performing minimization step: 3944. Total energy = 5580.6631 kcal/mol (5577.3209 without restraints) Performing minimization step: 3945. Total energy = 5579.1732 kcal/mol (5575.8319 without restraints) Performing minimization step: 3946. Total energy = 5577.6856 kcal/mol (5574.3453 without restraints) Performing minimization step: 3947. Total energy = 5576.2009 kcal/mol (5572.8615 without restraints) Performing minimization step: 3948. Total energy = 5574.7185 kcal/mol (5571.3801 without restraints) Performing minimization step: 3949. Total energy = 5573.2380 kcal/mol (5569.9006 without restraints) Performing minimization step: 3950. Total energy = 5571.7603 kcal/mol (5568.4238 without restraints) Performing minimization step: 3951. Total energy = 5570.2853 kcal/mol (5566.9498 without restraints) Performing minimization step: 3952. Total energy = 5568.8123 kcal/mol (5565.4778 without restraints) Performing minimization step: 3953. Total energy = 5567.3412 kcal/mol (5564.0076 without restraints) Performing minimization step: 3954. Total energy = 5565.8723 kcal/mol (5562.5397 without restraints) Performing minimization step: 3955. Total energy = 5564.4060 kcal/mol (5561.0743 without restraints) Performing minimization step: 3956. Total energy = 5562.9422 kcal/mol (5559.6115 without restraints) Performing minimization step: 3957. Total energy = 5561.4804 kcal/mol (5558.1507 without restraints) Performing minimization step: 3958. Total energy = 5560.0209 kcal/mol (5556.6920 without restraints) Performing minimization step: 3959. Total energy = 5558.5637 kcal/mol (5555.2359 without restraints) Performing minimization step: 3960. Total energy = 5557.1087 kcal/mol (5553.7819 without restraints) Performing minimization step: 3961. Total energy = 5555.6558 kcal/mol (5552.3299 without restraints) Performing minimization step: 3962. Total energy = 5554.2055 kcal/mol (5550.8806 without restraints) Performing minimization step: 3963. Total energy = 5552.7575 kcal/mol (5549.4335 without restraints) Performing minimization step: 3964. Total energy = 5551.3118 kcal/mol (5547.9888 without restraints) Performing minimization step: 3965. Total energy = 5549.8681 kcal/mol (5546.5460 without restraints) Performing minimization step: 3966. Total energy = 5548.4269 kcal/mol (5545.1057 without restraints) Performing minimization step: 3967. Total energy = 5546.9881 kcal/mol (5543.6679 without restraints) Performing minimization step: 3968. Total energy = 5545.5513 kcal/mol (5542.2321 without restraints) Performing minimization step: 3969. Total energy = 5544.1169 kcal/mol (5540.7986 without restraints) Performing minimization step: 3970. Total energy = 5542.6847 kcal/mol (5539.3676 without restraints) Performing minimization step: 3971. Total energy = 5541.2549 kcal/mol (5537.9385 without restraints) Performing minimization step: 3972. Total energy = 5539.8272 kcal/mol (5536.5117 without restraints) Performing minimization step: 3973. Total energy = 5538.4013 kcal/mol (5535.0868 without restraints) Performing minimization step: 3974. Total energy = 5536.9778 kcal/mol (5533.6641 without restraints) Performing minimization step: 3975. Total energy = 5535.5562 kcal/mol (5532.2436 without restraints) Performing minimization step: 3976. Total energy = 5534.1371 kcal/mol (5530.8254 without restraints) Performing minimization step: 3977. Total energy = 5532.7202 kcal/mol (5529.4095 without restraints) Performing minimization step: 3978. Total energy = 5531.3057 kcal/mol (5527.9959 without restraints) Performing minimization step: 3979. Total energy = 5529.8932 kcal/mol (5526.5843 without restraints) Performing minimization step: 3980. Total energy = 5528.4831 kcal/mol (5525.1752 without restraints) Performing minimization step: 3981. Total energy = 5527.0754 kcal/mol (5523.7684 without restraints) Performing minimization step: 3982. Total energy = 5525.6695 kcal/mol (5522.3635 without restraints) Performing minimization step: 3983. Total energy = 5524.2654 kcal/mol (5520.9603 without restraints) Performing minimization step: 3984. Total energy = 5522.8641 kcal/mol (5519.5599 without restraints) Performing minimization step: 3985. Total energy = 5521.4645 kcal/mol (5518.1612 without restraints) Performing minimization step: 3986. Total energy = 5520.0671 kcal/mol (5516.7647 without restraints) Performing minimization step: 3987. Total energy = 5518.6718 kcal/mol (5515.3704 without restraints) Performing minimization step: 3988. Total energy = 5517.2789 kcal/mol (5513.9784 without restraints) Performing minimization step: 3989. Total energy = 5515.8878 kcal/mol (5512.5882 without restraints) Performing minimization step: 3990. Total energy = 5514.4991 kcal/mol (5511.2006 without restraints) Performing minimization step: 3991. Total energy = 5513.1122 kcal/mol (5509.8143 without restraints) Performing minimization step: 3992. Total energy = 5511.7278 kcal/mol (5508.4310 without restraints) Performing minimization step: 3993. Total energy = 5510.3453 kcal/mol (5507.0494 without restraints) Performing minimization step: 3994. Total energy = 5508.9648 kcal/mol (5505.6699 without restraints) Performing minimization step: 3995. Total energy = 5507.5864 kcal/mol (5504.2924 without restraints) Performing minimization step: 3996. Total energy = 5506.2101 kcal/mol (5502.9170 without restraints) Performing minimization step: 3997. Total energy = 5504.8358 kcal/mol (5501.5436 without restraints) Performing minimization step: 3998. Total energy = 5503.4637 kcal/mol (5500.1724 without restraints) Performing minimization step: 3999. Total energy = 5502.0939 kcal/mol (5498.8035 without restraints) Performing minimization step: 4000. Total energy = 5500.7254 kcal/mol (5497.4360 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 5499.3592 kcal/mol (5496.0707 without restraints) Performing minimization step: 4002. Total energy = 5497.9958 kcal/mol (5494.7082 without restraints) Performing minimization step: 4003. Total energy = 5496.6341 kcal/mol (5493.3475 without restraints) Performing minimization step: 4004. Total energy = 5495.2743 kcal/mol (5491.9886 without restraints) Performing minimization step: 4005. Total energy = 5493.9167 kcal/mol (5490.6318 without restraints) Performing minimization step: 4006. Total energy = 5492.5609 kcal/mol (5489.2770 without restraints) Performing minimization step: 4007. Total energy = 5491.2071 kcal/mol (5487.9240 without restraints) Performing minimization step: 4008. Total energy = 5489.8554 kcal/mol (5486.5733 without restraints) Performing minimization step: 4009. Total energy = 5488.5051 kcal/mol (5485.2239 without restraints) Performing minimization step: 4010. Total energy = 5487.1575 kcal/mol (5483.8772 without restraints) Performing minimization step: 4011. Total energy = 5485.8119 kcal/mol (5482.5325 without restraints) Performing minimization step: 4012. Total energy = 5484.4681 kcal/mol (5481.1896 without restraints) Performing minimization step: 4013. Total energy = 5483.1268 kcal/mol (5479.8493 without restraints) Performing minimization step: 4014. Total energy = 5481.7874 kcal/mol (5478.5108 without restraints) Performing minimization step: 4015. Total energy = 5480.4495 kcal/mol (5477.1737 without restraints) Performing minimization step: 4016. Total energy = 5479.1140 kcal/mol (5475.8391 without restraints) Performing minimization step: 4017. Total energy = 5477.7806 kcal/mol (5474.5066 without restraints) Performing minimization step: 4018. Total energy = 5476.4494 kcal/mol (5473.1763 without restraints) Performing minimization step: 4019. Total energy = 5475.1196 kcal/mol (5471.8474 without restraints) Performing minimization step: 4020. Total energy = 5473.7919 kcal/mol (5470.5206 without restraints) Performing minimization step: 4021. Total energy = 5472.4662 kcal/mol (5469.1958 without restraints) Performing minimization step: 4022. Total energy = 5471.1425 kcal/mol (5467.8730 without restraints) Performing minimization step: 4023. Total energy = 5469.8207 kcal/mol (5466.5521 without restraints) Performing minimization step: 4024. Total energy = 5468.5011 kcal/mol (5465.2333 without restraints) Performing minimization step: 4025. Total energy = 5467.1832 kcal/mol (5463.9165 without restraints) Performing minimization step: 4026. Total energy = 5465.8674 kcal/mol (5462.6014 without restraints) Performing minimization step: 4027. Total energy = 5464.5534 kcal/mol (5461.2884 without restraints) Performing minimization step: 4028. Total energy = 5463.2413 kcal/mol (5459.9772 without restraints) Performing minimization step: 4029. Total energy = 5461.9313 kcal/mol (5458.6680 without restraints) Performing minimization step: 4030. Total energy = 5460.6234 kcal/mol (5457.3611 without restraints) Performing minimization step: 4031. Total energy = 5459.3175 kcal/mol (5456.0560 without restraints) Performing minimization step: 4032. Total energy = 5458.0130 kcal/mol (5454.7524 without restraints) Performing minimization step: 4033. Total energy = 5456.7105 kcal/mol (5453.4508 without restraints) Performing minimization step: 4034. Total energy = 5455.4100 kcal/mol (5452.1512 without restraints) Performing minimization step: 4035. Total energy = 5454.1115 kcal/mol (5450.8535 without restraints) Performing minimization step: 4036. Total energy = 5452.8148 kcal/mol (5449.5577 without restraints) Performing minimization step: 4037. Total energy = 5451.5200 kcal/mol (5448.2638 without restraints) Performing minimization step: 4038. Total energy = 5450.2271 kcal/mol (5446.9718 without restraints) Performing minimization step: 4039. Total energy = 5448.9360 kcal/mol (5445.6816 without restraints) Performing minimization step: 4040. Total energy = 5447.6469 kcal/mol (5444.3933 without restraints) Performing minimization step: 4041. Total energy = 5446.3596 kcal/mol (5443.1069 without restraints) Performing minimization step: 4042. Total energy = 5445.0744 kcal/mol (5441.8225 without restraints) Performing minimization step: 4043. Total energy = 5443.7908 kcal/mol (5440.5399 without restraints) Performing minimization step: 4044. Total energy = 5442.5090 kcal/mol (5439.2590 without restraints) Performing minimization step: 4045. Total energy = 5441.2297 kcal/mol (5437.9808 without restraints) Performing minimization step: 4046. Total energy = 5439.9520 kcal/mol (5436.7037 without restraints) Performing minimization step: 4047. Total energy = 5438.6761 kcal/mol (5435.4287 without restraints) Performing minimization step: 4048. Total energy = 5437.4020 kcal/mol (5434.1554 without restraints) Performing minimization step: 4049. Total energy = 5436.1296 kcal/mol (5432.8840 without restraints) Performing minimization step: 4050. Total energy = 5434.8593 kcal/mol (5431.6145 without restraints) Performing minimization step: 4051. Total energy = 5433.5906 kcal/mol (5430.3467 without restraints) Performing minimization step: 4052. Total energy = 5432.3241 kcal/mol (5429.0810 without restraints) Performing minimization step: 4053. Total energy = 5431.0589 kcal/mol (5427.8167 without restraints) Performing minimization step: 4054. Total energy = 5429.7958 kcal/mol (5426.5544 without restraints) Performing minimization step: 4055. Total energy = 5428.5344 kcal/mol (5425.2939 without restraints) Performing minimization step: 4056. Total energy = 5427.2752 kcal/mol (5424.0356 without restraints) Performing minimization step: 4057. Total energy = 5426.0180 kcal/mol (5422.7793 without restraints) Performing minimization step: 4058. Total energy = 5424.7624 kcal/mol (5421.5244 without restraints) Performing minimization step: 4059. Total energy = 5423.5083 kcal/mol (5420.2713 without restraints) Performing minimization step: 4060. Total energy = 5422.2556 kcal/mol (5419.0194 without restraints) Performing minimization step: 4061. Total energy = 5421.0049 kcal/mol (5417.7696 without restraints) Performing minimization step: 4062. Total energy = 5419.7564 kcal/mol (5416.5220 without restraints) Performing minimization step: 4063. Total energy = 5418.5095 kcal/mol (5415.2759 without restraints) Performing minimization step: 4064. Total energy = 5417.2644 kcal/mol (5414.0316 without restraints) Performing minimization step: 4065. Total energy = 5416.0210 kcal/mol (5412.7892 without restraints) Performing minimization step: 4066. Total energy = 5414.7795 kcal/mol (5411.5485 without restraints) Performing minimization step: 4067. Total energy = 5413.5396 kcal/mol (5410.3094 without restraints) Performing minimization step: 4068. Total energy = 5412.3015 kcal/mol (5409.0721 without restraints) Performing minimization step: 4069. Total energy = 5411.0654 kcal/mol (5407.8371 without restraints) Performing minimization step: 4070. Total energy = 5409.8310 kcal/mol (5406.6034 without restraints) Performing minimization step: 4071. Total energy = 5408.5983 kcal/mol (5405.3715 without restraints) Performing minimization step: 4072. Total energy = 5407.3674 kcal/mol (5404.1415 without restraints) Performing minimization step: 4073. Total energy = 5406.1384 kcal/mol (5402.9133 without restraints) Performing minimization step: 4074. Total energy = 5404.9110 kcal/mol (5401.6869 without restraints) Performing minimization step: 4075. Total energy = 5403.6856 kcal/mol (5400.4622 without restraints) Performing minimization step: 4076. Total energy = 5402.4617 kcal/mol (5399.2392 without restraints) Performing minimization step: 4077. Total energy = 5401.2395 kcal/mol (5398.0178 without restraints) Performing minimization step: 4078. Total energy = 5400.0192 kcal/mol (5396.7985 without restraints) Performing minimization step: 4079. Total energy = 5398.8005 kcal/mol (5395.5805 without restraints) Performing minimization step: 4080. Total energy = 5397.5835 kcal/mol (5394.3644 without restraints) Performing minimization step: 4081. Total energy = 5396.3683 kcal/mol (5393.1500 without restraints) Performing minimization step: 4082. Total energy = 5395.1547 kcal/mol (5391.9373 without restraints) Performing minimization step: 4083. Total energy = 5393.9429 kcal/mol (5390.7263 without restraints) Performing minimization step: 4084. Total energy = 5392.7333 kcal/mol (5389.5176 without restraints) Performing minimization step: 4085. Total energy = 5391.5249 kcal/mol (5388.3100 without restraints) Performing minimization step: 4086. Total energy = 5390.3181 kcal/mol (5387.1041 without restraints) Performing minimization step: 4087. Total energy = 5389.1129 kcal/mol (5385.8999 without restraints) Performing minimization step: 4088. Total energy = 5387.9098 kcal/mol (5384.6974 without restraints) Performing minimization step: 4089. Total energy = 5386.7086 kcal/mol (5383.4970 without restraints) Performing minimization step: 4090. Total energy = 5385.5087 kcal/mol (5382.2980 without restraints) Performing minimization step: 4091. Total energy = 5384.3104 kcal/mol (5381.1004 without restraints) Performing minimization step: 4092. Total energy = 5383.1139 kcal/mol (5379.9048 without restraints) Performing minimization step: 4093. Total energy = 5381.9190 kcal/mol (5378.7109 without restraints) Performing minimization step: 4094. Total energy = 5380.7257 kcal/mol (5377.5184 without restraints) Performing minimization step: 4095. Total energy = 5379.5342 kcal/mol (5376.3277 without restraints) Performing minimization step: 4096. Total energy = 5378.3444 kcal/mol (5375.1387 without restraints) Performing minimization step: 4097. Total energy = 5377.1564 kcal/mol (5373.9515 without restraints) Performing minimization step: 4098. Total energy = 5375.9700 kcal/mol (5372.7660 without restraints) Performing minimization step: 4099. Total energy = 5374.7853 kcal/mol (5371.5821 without restraints) Performing minimization step: 4100. Total energy = 5373.6025 kcal/mol (5370.4002 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 5372.4209 kcal/mol (5369.2194 without restraints) Performing minimization step: 4102. Total energy = 5371.2411 kcal/mol (5368.0404 without restraints) Performing minimization step: 4103. Total energy = 5370.0630 kcal/mol (5366.8631 without restraints) Performing minimization step: 4104. Total energy = 5368.8867 kcal/mol (5365.6877 without restraints) Performing minimization step: 4105. Total energy = 5367.7122 kcal/mol (5364.5140 without restraints) Performing minimization step: 4106. Total energy = 5366.5390 kcal/mol (5363.3416 without restraints) Performing minimization step: 4107. Total energy = 5365.3675 kcal/mol (5362.1709 without restraints) Performing minimization step: 4108. Total energy = 5364.1975 kcal/mol (5361.0018 without restraints) Performing minimization step: 4109. Total energy = 5363.0292 kcal/mol (5359.8343 without restraints) Performing minimization step: 4110. Total energy = 5361.8626 kcal/mol (5358.6684 without restraints) Performing minimization step: 4111. Total energy = 5360.6977 kcal/mol (5357.5044 without restraints) Performing minimization step: 4112. Total energy = 5359.5343 kcal/mol (5356.3418 without restraints) Performing minimization step: 4113. Total energy = 5358.3725 kcal/mol (5355.1808 without restraints) Performing minimization step: 4114. Total energy = 5357.2123 kcal/mol (5354.0215 without restraints) Performing minimization step: 4115. Total energy = 5356.0537 kcal/mol (5352.8637 without restraints) Performing minimization step: 4116. Total energy = 5354.8970 kcal/mol (5351.7078 without restraints) Performing minimization step: 4117. Total energy = 5353.7416 kcal/mol (5350.5532 without restraints) Performing minimization step: 4118. Total energy = 5352.5877 kcal/mol (5349.4001 without restraints) Performing minimization step: 4119. Total energy = 5351.4354 kcal/mol (5348.2486 without restraints) Performing minimization step: 4120. Total energy = 5350.2849 kcal/mol (5347.0991 without restraints) Performing minimization step: 4121. Total energy = 5349.1357 kcal/mol (5345.9505 without restraints) Performing minimization step: 4122. Total energy = 5347.9891 kcal/mol (5344.8047 without restraints) Performing minimization step: 4123. Total energy = 5346.8435 kcal/mol (5343.6600 without restraints) Performing minimization step: 4124. Total energy = 5345.6991 kcal/mol (5342.5164 without restraints) Performing minimization step: 4125. Total energy = 5344.5567 kcal/mol (5341.3749 without restraints) Performing minimization step: 4126. Total energy = 5343.4158 kcal/mol (5340.2347 without restraints) Performing minimization step: 4127. Total energy = 5342.2761 kcal/mol (5339.0958 without restraints) Performing minimization step: 4128. Total energy = 5341.1381 kcal/mol (5337.9586 without restraints) Performing minimization step: 4129. Total energy = 5340.0018 kcal/mol (5336.8231 without restraints) Performing minimization step: 4130. Total energy = 5338.8670 kcal/mol (5335.6892 without restraints) Performing minimization step: 4131. Total energy = 5337.7339 kcal/mol (5334.5568 without restraints) Performing minimization step: 4132. Total energy = 5336.6022 kcal/mol (5333.4260 without restraints) Performing minimization step: 4133. Total energy = 5335.4723 kcal/mol (5332.2969 without restraints) Performing minimization step: 4134. Total energy = 5334.3436 kcal/mol (5331.1690 without restraints) Performing minimization step: 4135. Total energy = 5333.2166 kcal/mol (5330.0427 without restraints) Performing minimization step: 4136. Total energy = 5332.0910 kcal/mol (5328.9180 without restraints) Performing minimization step: 4137. Total energy = 5330.9671 kcal/mol (5327.7949 without restraints) Performing minimization step: 4138. Total energy = 5329.8446 kcal/mol (5326.6732 without restraints) Performing minimization step: 4139. Total energy = 5328.7240 kcal/mol (5325.5534 without restraints) Performing minimization step: 4140. Total energy = 5327.6048 kcal/mol (5324.4350 without restraints) Performing minimization step: 4141. Total energy = 5326.4871 kcal/mol (5323.3181 without restraints) Performing minimization step: 4142. Total energy = 5325.3713 kcal/mol (5322.2031 without restraints) Performing minimization step: 4143. Total energy = 5324.2567 kcal/mol (5321.0893 without restraints) Performing minimization step: 4144. Total energy = 5323.1437 kcal/mol (5319.9772 without restraints) Performing minimization step: 4145. Total energy = 5322.0322 kcal/mol (5318.8664 without restraints) Performing minimization step: 4146. Total energy = 5320.9225 kcal/mol (5317.7574 without restraints) Performing minimization step: 4147. Total energy = 5319.8137 kcal/mol (5316.6494 without restraints) Performing minimization step: 4148. Total energy = 5318.7066 kcal/mol (5315.5431 without restraints) Performing minimization step: 4149. Total energy = 5317.6012 kcal/mol (5314.4385 without restraints) Performing minimization step: 4150. Total energy = 5316.4973 kcal/mol (5313.3355 without restraints) Performing minimization step: 4151. Total energy = 5315.3948 kcal/mol (5312.2337 without restraints) Performing minimization step: 4152. Total energy = 5314.2937 kcal/mol (5311.1335 without restraints) Performing minimization step: 4153. Total energy = 5313.1942 kcal/mol (5310.0347 without restraints) Performing minimization step: 4154. Total energy = 5312.0964 kcal/mol (5308.9377 without restraints) Performing minimization step: 4155. Total energy = 5310.9999 kcal/mol (5307.8420 without restraints) Performing minimization step: 4156. Total energy = 5309.9049 kcal/mol (5306.7479 without restraints) Performing minimization step: 4157. Total energy = 5308.8118 kcal/mol (5305.6555 without restraints) Performing minimization step: 4158. Total energy = 5307.7198 kcal/mol (5304.5643 without restraints) Performing minimization step: 4159. Total energy = 5306.6290 kcal/mol (5303.4743 without restraints) Performing minimization step: 4160. Total energy = 5305.5397 kcal/mol (5302.3857 without restraints) Performing minimization step: 4161. Total energy = 5304.4521 kcal/mol (5301.2989 without restraints) Performing minimization step: 4162. Total energy = 5303.3657 kcal/mol (5300.2134 without restraints) Performing minimization step: 4163. Total energy = 5302.2813 kcal/mol (5299.1298 without restraints) Performing minimization step: 4164. Total energy = 5301.1982 kcal/mol (5298.0474 without restraints) Performing minimization step: 4165. Total energy = 5300.1160 kcal/mol (5296.9660 without restraints) Performing minimization step: 4166. Total energy = 5299.0358 kcal/mol (5295.8865 without restraints) Performing minimization step: 4167. Total energy = 5297.9570 kcal/mol (5294.8085 without restraints) Performing minimization step: 4168. Total energy = 5296.8797 kcal/mol (5293.7321 without restraints) Performing minimization step: 4169. Total energy = 5295.8033 kcal/mol (5292.6564 without restraints) Performing minimization step: 4170. Total energy = 5294.7289 kcal/mol (5291.5828 without restraints) Performing minimization step: 4171. Total energy = 5293.6559 kcal/mol (5290.5106 without restraints) Performing minimization step: 4172. Total energy = 5292.5844 kcal/mol (5289.4399 without restraints) Performing minimization step: 4173. Total energy = 5291.5146 kcal/mol (5288.3708 without restraints) Performing minimization step: 4174. Total energy = 5290.4462 kcal/mol (5287.3033 without restraints) Performing minimization step: 4175. Total energy = 5289.3794 kcal/mol (5286.2372 without restraints) Performing minimization step: 4176. Total energy = 5288.3138 kcal/mol (5285.1724 without restraints) Performing minimization step: 4177. Total energy = 5287.2496 kcal/mol (5284.1089 without restraints) Performing minimization step: 4178. Total energy = 5286.1867 kcal/mol (5283.0468 without restraints) Performing minimization step: 4179. Total energy = 5285.1253 kcal/mol (5281.9862 without restraints) Performing minimization step: 4180. Total energy = 5284.0649 kcal/mol (5280.9266 without restraints) Performing minimization step: 4181. Total energy = 5283.0062 kcal/mol (5279.8686 without restraints) Performing minimization step: 4182. Total energy = 5281.9490 kcal/mol (5278.8122 without restraints) Performing minimization step: 4183. Total energy = 5280.8933 kcal/mol (5277.7573 without restraints) Performing minimization step: 4184. Total energy = 5279.8390 kcal/mol (5276.7038 without restraints) Performing minimization step: 4185. Total energy = 5278.7862 kcal/mol (5275.6518 without restraints) Performing minimization step: 4186. Total energy = 5277.7346 kcal/mol (5274.6009 without restraints) Performing minimization step: 4187. Total energy = 5276.6846 kcal/mol (5273.5517 without restraints) Performing minimization step: 4188. Total energy = 5275.6360 kcal/mol (5272.5039 without restraints) Performing minimization step: 4189. Total energy = 5274.5886 kcal/mol (5271.4572 without restraints) Performing minimization step: 4190. Total energy = 5273.5428 kcal/mol (5270.4121 without restraints) Performing minimization step: 4191. Total energy = 5272.4985 kcal/mol (5269.3686 without restraints) Performing minimization step: 4192. Total energy = 5271.4555 kcal/mol (5268.3264 without restraints) Performing minimization step: 4193. Total energy = 5270.4138 kcal/mol (5267.2853 without restraints) Performing minimization step: 4194. Total energy = 5269.3734 kcal/mol (5266.2459 without restraints) Performing minimization step: 4195. Total energy = 5268.3348 kcal/mol (5265.2080 without restraints) Performing minimization step: 4196. Total energy = 5267.2977 kcal/mol (5264.1716 without restraints) Performing minimization step: 4197. Total energy = 5266.2617 kcal/mol (5263.1364 without restraints) Performing minimization step: 4198. Total energy = 5265.2270 kcal/mol (5262.1025 without restraints) Performing minimization step: 4199. Total energy = 5264.1938 kcal/mol (5261.0700 without restraints) Performing minimization step: 4200. Total energy = 5263.1618 kcal/mol (5260.0389 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 5262.1314 kcal/mol (5259.0091 without restraints) Performing minimization step: 4202. Total energy = 5261.1022 kcal/mol (5257.9807 without restraints) Performing minimization step: 4203. Total energy = 5260.0745 kcal/mol (5256.9538 without restraints) Performing minimization step: 4204. Total energy = 5259.0481 kcal/mol (5255.9282 without restraints) Performing minimization step: 4205. Total energy = 5258.0231 kcal/mol (5254.9039 without restraints) Performing minimization step: 4206. Total energy = 5256.9995 kcal/mol (5253.8811 without restraints) Performing minimization step: 4207. Total energy = 5255.9777 kcal/mol (5252.8600 without restraints) Performing minimization step: 4208. Total energy = 5254.9568 kcal/mol (5251.8399 without restraints) Performing minimization step: 4209. Total energy = 5253.9374 kcal/mol (5250.8214 without restraints) Performing minimization step: 4210. Total energy = 5252.9194 kcal/mol (5249.8040 without restraints) Performing minimization step: 4211. Total energy = 5251.9026 kcal/mol (5248.7880 without restraints) Performing minimization step: 4212. Total energy = 5250.8874 kcal/mol (5247.7734 without restraints) Performing minimization step: 4213. Total energy = 5249.8732 kcal/mol (5246.7601 without restraints) Performing minimization step: 4214. Total energy = 5248.8607 kcal/mol (5245.7483 without restraints) Performing minimization step: 4215. Total energy = 5247.8493 kcal/mol (5244.7376 without restraints) Performing minimization step: 4216. Total energy = 5246.8394 kcal/mol (5243.7287 without restraints) Performing minimization step: 4217. Total energy = 5245.8309 kcal/mol (5242.7208 without restraints) Performing minimization step: 4218. Total energy = 5244.8235 kcal/mol (5241.7141 without restraints) Performing minimization step: 4219. Total energy = 5243.8175 kcal/mol (5240.7089 without restraints) Performing minimization step: 4220. Total energy = 5242.8131 kcal/mol (5239.7052 without restraints) Performing minimization step: 4221. Total energy = 5241.8098 kcal/mol (5238.7027 without restraints) Performing minimization step: 4222. Total energy = 5240.8078 kcal/mol (5237.7014 without restraints) Performing minimization step: 4223. Total energy = 5239.8070 kcal/mol (5236.7013 without restraints) Performing minimization step: 4224. Total energy = 5238.8081 kcal/mol (5235.7032 without restraints) Performing minimization step: 4225. Total energy = 5237.8103 kcal/mol (5234.7062 without restraints) Performing minimization step: 4226. Total energy = 5236.8136 kcal/mol (5233.7102 without restraints) Performing minimization step: 4227. Total energy = 5235.8183 kcal/mol (5232.7156 without restraints) Performing minimization step: 4228. Total energy = 5234.8242 kcal/mol (5231.7223 without restraints) Performing minimization step: 4229. Total energy = 5233.8316 kcal/mol (5230.7306 without restraints) Performing minimization step: 4230. Total energy = 5232.8405 kcal/mol (5229.7401 without restraints) Performing minimization step: 4231. Total energy = 5231.8504 kcal/mol (5228.7507 without restraints) Performing minimization step: 4232. Total energy = 5230.8621 kcal/mol (5227.7631 without restraints) Performing minimization step: 4233. Total energy = 5229.8742 kcal/mol (5226.7760 without restraints) Performing minimization step: 4234. Total energy = 5228.8881 kcal/mol (5225.7907 without restraints) Performing minimization step: 4235. Total energy = 5227.9033 kcal/mol (5224.8066 without restraints) Performing minimization step: 4236. Total energy = 5226.9197 kcal/mol (5223.8238 without restraints) Performing minimization step: 4237. Total energy = 5225.9374 kcal/mol (5222.8423 without restraints) Performing minimization step: 4238. Total energy = 5224.9565 kcal/mol (5221.8620 without restraints) Performing minimization step: 4239. Total energy = 5223.9767 kcal/mol (5220.8831 without restraints) Performing minimization step: 4240. Total energy = 5222.9984 kcal/mol (5219.9054 without restraints) Performing minimization step: 4241. Total energy = 5222.0214 kcal/mol (5218.9291 without restraints) Performing minimization step: 4242. Total energy = 5221.0458 kcal/mol (5217.9543 without restraints) Performing minimization step: 4243. Total energy = 5220.0713 kcal/mol (5216.9805 without restraints) Performing minimization step: 4244. Total energy = 5219.0983 kcal/mol (5216.0082 without restraints) Performing minimization step: 4245. Total energy = 5218.1265 kcal/mol (5215.0373 without restraints) Performing minimization step: 4246. Total energy = 5217.1559 kcal/mol (5214.0674 without restraints) Performing minimization step: 4247. Total energy = 5216.1861 kcal/mol (5213.0983 without restraints) Performing minimization step: 4248. Total energy = 5215.2181 kcal/mol (5212.1310 without restraints) Performing minimization step: 4249. Total energy = 5214.2514 kcal/mol (5211.1651 without restraints) Performing minimization step: 4250. Total energy = 5213.2861 kcal/mol (5210.2005 without restraints) Performing minimization step: 4251. Total energy = 5212.3219 kcal/mol (5209.2371 without restraints) Performing minimization step: 4252. Total energy = 5211.3590 kcal/mol (5208.2748 without restraints) Performing minimization step: 4253. Total energy = 5210.3973 kcal/mol (5207.3138 without restraints) Performing minimization step: 4254. Total energy = 5209.4368 kcal/mol (5206.3541 without restraints) Performing minimization step: 4255. Total energy = 5208.4776 kcal/mol (5205.3955 without restraints) Performing minimization step: 4256. Total energy = 5207.5195 kcal/mol (5204.4383 without restraints) Performing minimization step: 4257. Total energy = 5206.5629 kcal/mol (5203.4824 without restraints) Performing minimization step: 4258. Total energy = 5205.6075 kcal/mol (5202.5278 without restraints) Performing minimization step: 4259. Total energy = 5204.6535 kcal/mol (5201.5745 without restraints) Performing minimization step: 4260. Total energy = 5203.7004 kcal/mol (5200.6221 without restraints) Performing minimization step: 4261. Total energy = 5202.7490 kcal/mol (5199.6715 without restraints) Performing minimization step: 4262. Total energy = 5201.7988 kcal/mol (5198.7219 without restraints) Performing minimization step: 4263. Total energy = 5200.8497 kcal/mol (5197.7736 without restraints) Performing minimization step: 4264. Total energy = 5199.9020 kcal/mol (5196.8266 without restraints) Performing minimization step: 4265. Total energy = 5198.9554 kcal/mol (5195.8808 without restraints) Performing minimization step: 4266. Total energy = 5198.0100 kcal/mol (5194.9361 without restraints) Performing minimization step: 4267. Total energy = 5197.0657 kcal/mol (5193.9925 without restraints) Performing minimization step: 4268. Total energy = 5196.1231 kcal/mol (5193.0506 without restraints) Performing minimization step: 4269. Total energy = 5195.1815 kcal/mol (5192.1097 without restraints) Performing minimization step: 4270. Total energy = 5194.2413 kcal/mol (5191.1703 without restraints) Performing minimization step: 4271. Total energy = 5193.3022 kcal/mol (5190.2320 without restraints) Performing minimization step: 4272. Total energy = 5192.3644 kcal/mol (5189.2948 without restraints) Performing minimization step: 4273. Total energy = 5191.4277 kcal/mol (5188.3588 without restraints) Performing minimization step: 4274. Total energy = 5190.4922 kcal/mol (5187.4241 without restraints) Performing minimization step: 4275. Total energy = 5189.5580 kcal/mol (5186.4906 without restraints) Performing minimization step: 4276. Total energy = 5188.6248 kcal/mol (5185.5581 without restraints) Performing minimization step: 4277. Total energy = 5187.6930 kcal/mol (5184.6270 without restraints) Performing minimization step: 4278. Total energy = 5186.7622 kcal/mol (5183.6970 without restraints) Performing minimization step: 4279. Total energy = 5185.8330 kcal/mol (5182.7686 without restraints) Performing minimization step: 4280. Total energy = 5184.9050 kcal/mol (5181.8412 without restraints) Performing minimization step: 4281. Total energy = 5183.9781 kcal/mol (5180.9150 without restraints) Performing minimization step: 4282. Total energy = 5183.0524 kcal/mol (5179.9901 without restraints) Performing minimization step: 4283. Total energy = 5182.1280 kcal/mol (5179.0663 without restraints) Performing minimization step: 4284. Total energy = 5181.2050 kcal/mol (5178.1441 without restraints) Performing minimization step: 4285. Total energy = 5180.2831 kcal/mol (5177.2230 without restraints) Performing minimization step: 4286. Total energy = 5179.3621 kcal/mol (5176.3027 without restraints) Performing minimization step: 4287. Total energy = 5178.4429 kcal/mol (5175.3842 without restraints) Performing minimization step: 4288. Total energy = 5177.5247 kcal/mol (5174.4666 without restraints) Performing minimization step: 4289. Total energy = 5176.6077 kcal/mol (5173.5504 without restraints) Performing minimization step: 4290. Total energy = 5175.6919 kcal/mol (5172.6354 without restraints) Performing minimization step: 4291. Total energy = 5174.7771 kcal/mol (5171.7211 without restraints) Performing minimization step: 4292. Total energy = 5173.8634 kcal/mol (5170.8083 without restraints) Performing minimization step: 4293. Total energy = 5172.9510 kcal/mol (5169.8966 without restraints) Performing minimization step: 4294. Total energy = 5172.0398 kcal/mol (5168.9860 without restraints) Performing minimization step: 4295. Total energy = 5171.1298 kcal/mol (5168.0768 without restraints) Performing minimization step: 4296. Total energy = 5170.2211 kcal/mol (5167.1689 without restraints) Performing minimization step: 4297. Total energy = 5169.3138 kcal/mol (5166.2623 without restraints) Performing minimization step: 4298. Total energy = 5168.4074 kcal/mol (5165.3565 without restraints) Performing minimization step: 4299. Total energy = 5167.5022 kcal/mol (5164.4520 without restraints) Performing minimization step: 4300. Total energy = 5166.5981 kcal/mol (5163.5487 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 5165.6955 kcal/mol (5162.6466 without restraints) Performing minimization step: 4302. Total energy = 5164.7939 kcal/mol (5161.7460 without restraints) Performing minimization step: 4303. Total energy = 5163.8938 kcal/mol (5160.8465 without restraints) Performing minimization step: 4304. Total energy = 5162.9950 kcal/mol (5159.9484 without restraints) Performing minimization step: 4305. Total energy = 5162.0969 kcal/mol (5159.0510 without restraints) Performing minimization step: 4306. Total energy = 5161.2001 kcal/mol (5158.1549 without restraints) Performing minimization step: 4307. Total energy = 5160.3046 kcal/mol (5157.2602 without restraints) Performing minimization step: 4308. Total energy = 5159.4099 kcal/mol (5156.3662 without restraints) Performing minimization step: 4309. Total energy = 5158.5166 kcal/mol (5155.4736 without restraints) Performing minimization step: 4310. Total energy = 5157.6244 kcal/mol (5154.5820 without restraints) Performing minimization step: 4311. Total energy = 5156.7334 kcal/mol (5153.6919 without restraints) Performing minimization step: 4312. Total energy = 5155.8437 kcal/mol (5152.8029 without restraints) Performing minimization step: 4313. Total energy = 5154.9550 kcal/mol (5151.9148 without restraints) Performing minimization step: 4314. Total energy = 5154.0675 kcal/mol (5151.0280 without restraints) Performing minimization step: 4315. Total energy = 5153.1812 kcal/mol (5150.1424 without restraints) Performing minimization step: 4316. Total energy = 5152.2958 kcal/mol (5149.2577 without restraints) Performing minimization step: 4317. Total energy = 5151.4116 kcal/mol (5148.3742 without restraints) Performing minimization step: 4318. Total energy = 5150.5291 kcal/mol (5147.4925 without restraints) Performing minimization step: 4319. Total energy = 5149.6474 kcal/mol (5146.6114 without restraints) Performing minimization step: 4320. Total energy = 5148.7667 kcal/mol (5145.7315 without restraints) Performing minimization step: 4321. Total energy = 5147.8878 kcal/mol (5144.8533 without restraints) Performing minimization step: 4322. Total energy = 5147.0095 kcal/mol (5143.9756 without restraints) Performing minimization step: 4323. Total energy = 5146.1322 kcal/mol (5143.0991 without restraints) Performing minimization step: 4324. Total energy = 5145.2562 kcal/mol (5142.2237 without restraints) Performing minimization step: 4325. Total energy = 5144.3815 kcal/mol (5141.3497 without restraints) Performing minimization step: 4326. Total energy = 5143.5077 kcal/mol (5140.4767 without restraints) Performing minimization step: 4327. Total energy = 5142.6349 kcal/mol (5139.6045 without restraints) Performing minimization step: 4328. Total energy = 5141.7636 kcal/mol (5138.7339 without restraints) Performing minimization step: 4329. Total energy = 5140.8932 kcal/mol (5137.8643 without restraints) Performing minimization step: 4330. Total energy = 5140.0240 kcal/mol (5136.9957 without restraints) Performing minimization step: 4331. Total energy = 5139.1559 kcal/mol (5136.1284 without restraints) Performing minimization step: 4332. Total energy = 5138.2892 kcal/mol (5135.2623 without restraints) Performing minimization step: 4333. Total energy = 5137.4234 kcal/mol (5134.3972 without restraints) Performing minimization step: 4334. Total energy = 5136.5588 kcal/mol (5133.5335 without restraints) Performing minimization step: 4335. Total energy = 5135.6953 kcal/mol (5132.6704 without restraints) Performing minimization step: 4336. Total energy = 5134.8327 kcal/mol (5131.8087 without restraints) Performing minimization step: 4337. Total energy = 5133.9713 kcal/mol (5130.9479 without restraints) Performing minimization step: 4338. Total energy = 5133.1113 kcal/mol (5130.0886 without restraints) Performing minimization step: 4339. Total energy = 5132.2521 kcal/mol (5129.2301 without restraints) Performing minimization step: 4340. Total energy = 5131.3942 kcal/mol (5128.3730 without restraints) Performing minimization step: 4341. Total energy = 5130.5373 kcal/mol (5127.5167 without restraints) Performing minimization step: 4342. Total energy = 5129.6816 kcal/mol (5126.6617 without restraints) Performing minimization step: 4343. Total energy = 5128.8274 kcal/mol (5125.8083 without restraints) Performing minimization step: 4344. Total energy = 5127.9742 kcal/mol (5124.9557 without restraints) Performing minimization step: 4345. Total energy = 5127.1223 kcal/mol (5124.1046 without restraints) Performing minimization step: 4346. Total energy = 5126.2711 kcal/mol (5123.2541 without restraints) Performing minimization step: 4347. Total energy = 5125.4210 kcal/mol (5122.4048 without restraints) Performing minimization step: 4348. Total energy = 5124.5726 kcal/mol (5121.5569 without restraints) Performing minimization step: 4349. Total energy = 5123.7249 kcal/mol (5120.7099 without restraints) Performing minimization step: 4350. Total energy = 5122.8784 kcal/mol (5119.8641 without restraints) Performing minimization step: 4351. Total energy = 5122.0327 kcal/mol (5119.0191 without restraints) Performing minimization step: 4352. Total energy = 5121.1882 kcal/mol (5118.1753 without restraints) Performing minimization step: 4353. Total energy = 5120.3450 kcal/mol (5117.3328 without restraints) Performing minimization step: 4354. Total energy = 5119.5023 kcal/mol (5116.4908 without restraints) Performing minimization step: 4355. Total energy = 5118.6609 kcal/mol (5115.6501 without restraints) Performing minimization step: 4356. Total energy = 5117.8206 kcal/mol (5114.8104 without restraints) Performing minimization step: 4357. Total energy = 5116.9813 kcal/mol (5113.9718 without restraints) Performing minimization step: 4358. Total energy = 5116.1433 kcal/mol (5113.1346 without restraints) Performing minimization step: 4359. Total energy = 5115.3065 kcal/mol (5112.2984 without restraints) Performing minimization step: 4360. Total energy = 5114.4707 kcal/mol (5111.4632 without restraints) Performing minimization step: 4361. Total energy = 5113.6358 kcal/mol (5110.6291 without restraints) Performing minimization step: 4362. Total energy = 5112.8022 kcal/mol (5109.7962 without restraints) Performing minimization step: 4363. Total energy = 5111.9697 kcal/mol (5108.9643 without restraints) Performing minimization step: 4364. Total energy = 5111.1382 kcal/mol (5108.1336 without restraints) Performing minimization step: 4365. Total energy = 5110.3081 kcal/mol (5107.3042 without restraints) Performing minimization step: 4366. Total energy = 5109.4789 kcal/mol (5106.4757 without restraints) Performing minimization step: 4367. Total energy = 5108.6508 kcal/mol (5105.6482 without restraints) Performing minimization step: 4368. Total energy = 5107.8238 kcal/mol (5104.8219 without restraints) Performing minimization step: 4369. Total energy = 5106.9978 kcal/mol (5103.9966 without restraints) Performing minimization step: 4370. Total energy = 5106.1729 kcal/mol (5103.1724 without restraints) Performing minimization step: 4371. Total energy = 5105.3491 kcal/mol (5102.3493 without restraints) Performing minimization step: 4372. Total energy = 5104.5260 kcal/mol (5101.5269 without restraints) Performing minimization step: 4373. Total energy = 5103.7043 kcal/mol (5100.7059 without restraints) Performing minimization step: 4374. Total energy = 5102.8838 kcal/mol (5099.8860 without restraints) Performing minimization step: 4375. Total energy = 5102.0645 kcal/mol (5099.0674 without restraints) Performing minimization step: 4376. Total energy = 5101.2461 kcal/mol (5098.2497 without restraints) Performing minimization step: 4377. Total energy = 5100.4288 kcal/mol (5097.4332 without restraints) Performing minimization step: 4378. Total energy = 5099.6128 kcal/mol (5096.6178 without restraints) Performing minimization step: 4379. Total energy = 5098.7976 kcal/mol (5095.8032 without restraints) Performing minimization step: 4380. Total energy = 5097.9834 kcal/mol (5094.9897 without restraints) Performing minimization step: 4381. Total energy = 5097.1703 kcal/mol (5094.1773 without restraints) Performing minimization step: 4382. Total energy = 5096.3583 kcal/mol (5093.3660 without restraints) Performing minimization step: 4383. Total energy = 5095.5473 kcal/mol (5092.5557 without restraints) Performing minimization step: 4384. Total energy = 5094.7372 kcal/mol (5091.7463 without restraints) Performing minimization step: 4385. Total energy = 5093.9283 kcal/mol (5090.9380 without restraints) Performing minimization step: 4386. Total energy = 5093.1207 kcal/mol (5090.1312 without restraints) Performing minimization step: 4387. Total energy = 5092.3140 kcal/mol (5089.3251 without restraints) Performing minimization step: 4388. Total energy = 5091.5083 kcal/mol (5088.5202 without restraints) Performing minimization step: 4389. Total energy = 5090.7040 kcal/mol (5087.7167 without restraints) Performing minimization step: 4390. Total energy = 5089.9008 kcal/mol (5086.9140 without restraints) Performing minimization step: 4391. Total energy = 5089.0979 kcal/mol (5086.1117 without restraints) Performing minimization step: 4392. Total energy = 5088.2965 kcal/mol (5085.3110 without restraints) Performing minimization step: 4393. Total energy = 5087.4961 kcal/mol (5084.5113 without restraints) Performing minimization step: 4394. Total energy = 5086.6968 kcal/mol (5083.7127 without restraints) Performing minimization step: 4395. Total energy = 5085.8984 kcal/mol (5082.9150 without restraints) Performing minimization step: 4396. Total energy = 5085.1011 kcal/mol (5082.1184 without restraints) Performing minimization step: 4397. Total energy = 5084.3049 kcal/mol (5081.3228 without restraints) Performing minimization step: 4398. Total energy = 5083.5097 kcal/mol (5080.5284 without restraints) Performing minimization step: 4399. Total energy = 5082.7156 kcal/mol (5079.7350 without restraints) Performing minimization step: 4400. Total energy = 5081.9226 kcal/mol (5078.9426 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 5081.1306 kcal/mol (5078.1513 without restraints) Performing minimization step: 4402. Total energy = 5080.3399 kcal/mol (5077.3612 without restraints) Performing minimization step: 4403. Total energy = 5079.5496 kcal/mol (5076.5715 without restraints) Performing minimization step: 4404. Total energy = 5078.7608 kcal/mol (5075.7835 without restraints) Performing minimization step: 4405. Total energy = 5077.9730 kcal/mol (5074.9963 without restraints) Performing minimization step: 4406. Total energy = 5077.1860 kcal/mol (5074.2101 without restraints) Performing minimization step: 4407. Total energy = 5076.4003 kcal/mol (5073.4250 without restraints) Performing minimization step: 4408. Total energy = 5075.6156 kcal/mol (5072.6411 without restraints) Performing minimization step: 4409. Total energy = 5074.8320 kcal/mol (5071.8580 without restraints) Performing minimization step: 4410. Total energy = 5074.0493 kcal/mol (5071.0760 without restraints) Performing minimization step: 4411. Total energy = 5073.2677 kcal/mol (5070.2951 without restraints) Performing minimization step: 4412. Total energy = 5072.4868 kcal/mol (5069.5149 without restraints) Performing minimization step: 4413. Total energy = 5071.7071 kcal/mol (5068.7359 without restraints) Performing minimization step: 4414. Total energy = 5070.9285 kcal/mol (5067.9580 without restraints) Performing minimization step: 4415. Total energy = 5070.1511 kcal/mol (5067.1813 without restraints) Performing minimization step: 4416. Total energy = 5069.3744 kcal/mol (5066.4052 without restraints) Performing minimization step: 4417. Total energy = 5068.5990 kcal/mol (5065.6306 without restraints) Performing minimization step: 4418. Total energy = 5067.8247 kcal/mol (5064.8569 without restraints) Performing minimization step: 4419. Total energy = 5067.0514 kcal/mol (5064.0842 without restraints) Performing minimization step: 4420. Total energy = 5066.2790 kcal/mol (5063.3126 without restraints) Performing minimization step: 4421. Total energy = 5065.5079 kcal/mol (5062.5420 without restraints) Performing minimization step: 4422. Total energy = 5064.7373 kcal/mol (5061.7722 without restraints) Performing minimization step: 4423. Total energy = 5063.9676 kcal/mol (5061.0032 without restraints) Performing minimization step: 4424. Total energy = 5063.1990 kcal/mol (5060.2352 without restraints) Performing minimization step: 4425. Total energy = 5062.4316 kcal/mol (5059.4684 without restraints) Performing minimization step: 4426. Total energy = 5061.6652 kcal/mol (5058.7027 without restraints) Performing minimization step: 4427. Total energy = 5060.8998 kcal/mol (5057.9380 without restraints) Performing minimization step: 4428. Total energy = 5060.1352 kcal/mol (5057.1740 without restraints) Performing minimization step: 4429. Total energy = 5059.3715 kcal/mol (5056.4110 without restraints) Performing minimization step: 4430. Total energy = 5058.6092 kcal/mol (5055.6494 without restraints) Performing minimization step: 4431. Total energy = 5057.8474 kcal/mol (5054.8884 without restraints) Performing minimization step: 4432. Total energy = 5057.0871 kcal/mol (5054.1286 without restraints) Performing minimization step: 4433. Total energy = 5056.3277 kcal/mol (5053.3700 without restraints) Performing minimization step: 4434. Total energy = 5055.5693 kcal/mol (5052.6122 without restraints) Performing minimization step: 4435. Total energy = 5054.8119 kcal/mol (5051.8555 without restraints) Performing minimization step: 4436. Total energy = 5054.0555 kcal/mol (5051.0998 without restraints) Performing minimization step: 4437. Total energy = 5053.3001 kcal/mol (5050.3451 without restraints) Performing minimization step: 4438. Total energy = 5052.5455 kcal/mol (5049.5911 without restraints) Performing minimization step: 4439. Total energy = 5051.7920 kcal/mol (5048.8383 without restraints) Performing minimization step: 4440. Total energy = 5051.0398 kcal/mol (5048.0868 without restraints) Performing minimization step: 4441. Total energy = 5050.2885 kcal/mol (5047.3360 without restraints) Performing minimization step: 4442. Total energy = 5049.5382 kcal/mol (5046.5864 without restraints) Performing minimization step: 4443. Total energy = 5048.7886 kcal/mol (5045.8377 without restraints) Performing minimization step: 4444. Total energy = 5048.0403 kcal/mol (5045.0899 without restraints) Performing minimization step: 4445. Total energy = 5047.2928 kcal/mol (5044.3431 without restraints) Performing minimization step: 4446. Total energy = 5046.5462 kcal/mol (5043.5972 without restraints) Performing minimization step: 4447. Total energy = 5045.8007 kcal/mol (5042.8523 without restraints) Performing minimization step: 4448. Total energy = 5045.0564 kcal/mol (5042.1086 without restraints) Performing minimization step: 4449. Total energy = 5044.3128 kcal/mol (5041.3657 without restraints) Performing minimization step: 4450. Total energy = 5043.5702 kcal/mol (5040.6238 without restraints) Performing minimization step: 4451. Total energy = 5042.8286 kcal/mol (5039.8829 without restraints) Performing minimization step: 4452. Total energy = 5042.0882 kcal/mol (5039.1431 without restraints) Performing minimization step: 4453. Total energy = 5041.3486 kcal/mol (5038.4042 without restraints) Performing minimization step: 4454. Total energy = 5040.6099 kcal/mol (5037.6662 without restraints) Performing minimization step: 4455. Total energy = 5039.8721 kcal/mol (5036.9291 without restraints) Performing minimization step: 4456. Total energy = 5039.1355 kcal/mol (5036.1931 without restraints) Performing minimization step: 4457. Total energy = 5038.3998 kcal/mol (5035.4581 without restraints) Performing minimization step: 4458. Total energy = 5037.6652 kcal/mol (5034.7242 without restraints) Performing minimization step: 4459. Total energy = 5036.9317 kcal/mol (5033.9913 without restraints) Performing minimization step: 4460. Total energy = 5036.1989 kcal/mol (5033.2592 without restraints) Performing minimization step: 4461. Total energy = 5035.4670 kcal/mol (5032.5280 without restraints) Performing minimization step: 4462. Total energy = 5034.7362 kcal/mol (5031.7978 without restraints) Performing minimization step: 4463. Total energy = 5034.0061 kcal/mol (5031.0684 without restraints) Performing minimization step: 4464. Total energy = 5033.2777 kcal/mol (5030.3407 without restraints) Performing minimization step: 4465. Total energy = 5032.5500 kcal/mol (5029.6137 without restraints) Performing minimization step: 4466. Total energy = 5031.8232 kcal/mol (5028.8875 without restraints) Performing minimization step: 4467. Total energy = 5031.0972 kcal/mol (5028.1621 without restraints) Performing minimization step: 4468. Total energy = 5030.3721 kcal/mol (5027.4377 without restraints) Performing minimization step: 4469. Total energy = 5029.6482 kcal/mol (5026.7144 without restraints) Performing minimization step: 4470. Total energy = 5028.9250 kcal/mol (5025.9919 without restraints) Performing minimization step: 4471. Total energy = 5028.2028 kcal/mol (5025.2705 without restraints) Performing minimization step: 4472. Total energy = 5027.4817 kcal/mol (5024.5499 without restraints) Performing minimization step: 4473. Total energy = 5026.7614 kcal/mol (5023.8303 without restraints) Performing minimization step: 4474. Total energy = 5026.0423 kcal/mol (5023.1119 without restraints) Performing minimization step: 4475. Total energy = 5025.3242 kcal/mol (5022.3944 without restraints) Performing minimization step: 4476. Total energy = 5024.6067 kcal/mol (5021.6776 without restraints) Performing minimization step: 4477. Total energy = 5023.8901 kcal/mol (5020.9616 without restraints) Performing minimization step: 4478. Total energy = 5023.1747 kcal/mol (5020.2469 without restraints) Performing minimization step: 4479. Total energy = 5022.4602 kcal/mol (5019.5331 without restraints) Performing minimization step: 4480. Total energy = 5021.7466 kcal/mol (5018.8201 without restraints) Performing minimization step: 4481. Total energy = 5021.0342 kcal/mol (5018.1084 without restraints) Performing minimization step: 4482. Total energy = 5020.3225 kcal/mol (5017.3974 without restraints) Performing minimization step: 4483. Total energy = 5019.6115 kcal/mol (5016.6870 without restraints) Performing minimization step: 4484. Total energy = 5018.9016 kcal/mol (5015.9778 without restraints) Performing minimization step: 4485. Total energy = 5018.1924 kcal/mol (5015.2693 without restraints) Performing minimization step: 4486. Total energy = 5017.4845 kcal/mol (5014.5620 without restraints) Performing minimization step: 4487. Total energy = 5016.7775 kcal/mol (5013.8556 without restraints) Performing minimization step: 4488. Total energy = 5016.0715 kcal/mol (5013.1503 without restraints) Performing minimization step: 4489. Total energy = 5015.3663 kcal/mol (5012.4458 without restraints) Performing minimization step: 4490. Total energy = 5014.6622 kcal/mol (5011.7423 without restraints) Performing minimization step: 4491. Total energy = 5013.9587 kcal/mol (5011.0394 without restraints) Performing minimization step: 4492. Total energy = 5013.2558 kcal/mol (5010.3372 without restraints) Performing minimization step: 4493. Total energy = 5012.5552 kcal/mol (5009.6373 without restraints) Performing minimization step: 4494. Total energy = 5011.8547 kcal/mol (5008.9374 without restraints) Performing minimization step: 4495. Total energy = 5011.1553 kcal/mol (5008.2387 without restraints) Performing minimization step: 4496. Total energy = 5010.4567 kcal/mol (5007.5407 without restraints) Performing minimization step: 4497. Total energy = 5009.7589 kcal/mol (5006.8437 without restraints) Performing minimization step: 4498. Total energy = 5009.0620 kcal/mol (5006.1472 without restraints) Performing minimization step: 4499. Total energy = 5008.3661 kcal/mol (5005.4522 without restraints) Performing minimization step: 4500. Total energy = 5007.6712 kcal/mol (5004.7579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 5006.9772 kcal/mol (5004.0646 without restraints) Performing minimization step: 4502. Total energy = 5006.2841 kcal/mol (5003.3721 without restraints) Performing minimization step: 4503. Total energy = 5005.5920 kcal/mol (5002.6806 without restraints) Performing minimization step: 4504. Total energy = 5004.9003 kcal/mol (5001.9895 without restraints) Performing minimization step: 4505. Total energy = 5004.2099 kcal/mol (5001.2999 without restraints) Performing minimization step: 4506. Total energy = 5003.5207 kcal/mol (5000.6113 without restraints) Performing minimization step: 4507. Total energy = 5002.8322 kcal/mol (4999.9235 without restraints) Performing minimization step: 4508. Total energy = 5002.1443 kcal/mol (4999.2362 without restraints) Performing minimization step: 4509. Total energy = 5001.4576 kcal/mol (4998.5502 without restraints) Performing minimization step: 4510. Total energy = 5000.7719 kcal/mol (4997.8652 without restraints) Performing minimization step: 4511. Total energy = 5000.0871 kcal/mol (4997.1810 without restraints) Performing minimization step: 4512. Total energy = 4999.4032 kcal/mol (4996.4977 without restraints) Performing minimization step: 4513. Total energy = 4998.7204 kcal/mol (4995.8156 without restraints) Performing minimization step: 4514. Total energy = 4998.0384 kcal/mol (4995.1342 without restraints) Performing minimization step: 4515. Total energy = 4997.3578 kcal/mol (4994.4543 without restraints) Performing minimization step: 4516. Total energy = 4996.6776 kcal/mol (4993.7747 without restraints) Performing minimization step: 4517. Total energy = 4995.9982 kcal/mol (4993.0960 without restraints) Performing minimization step: 4518. Total energy = 4995.3200 kcal/mol (4992.4185 without restraints) Performing minimization step: 4519. Total energy = 4994.6423 kcal/mol (4991.7414 without restraints) Performing minimization step: 4520. Total energy = 4993.9656 kcal/mol (4991.0654 without restraints) Performing minimization step: 4521. Total energy = 4993.2899 kcal/mol (4990.3904 without restraints) Performing minimization step: 4522. Total energy = 4992.6149 kcal/mol (4989.7160 without restraints) Performing minimization step: 4523. Total energy = 4991.9409 kcal/mol (4989.0427 without restraints) Performing minimization step: 4524. Total energy = 4991.2684 kcal/mol (4988.3708 without restraints) Performing minimization step: 4525. Total energy = 4990.5963 kcal/mol (4987.6994 without restraints) Performing minimization step: 4526. Total energy = 4989.9247 kcal/mol (4987.0284 without restraints) Performing minimization step: 4527. Total energy = 4989.2545 kcal/mol (4986.3589 without restraints) Performing minimization step: 4528. Total energy = 4988.5851 kcal/mol (4985.6901 without restraints) Performing minimization step: 4529. Total energy = 4987.9167 kcal/mol (4985.0224 without restraints) Performing minimization step: 4530. Total energy = 4987.2493 kcal/mol (4984.3556 without restraints) Performing minimization step: 4531. Total energy = 4986.5826 kcal/mol (4983.6895 without restraints) Performing minimization step: 4532. Total energy = 4985.9167 kcal/mol (4983.0243 without restraints) Performing minimization step: 4533. Total energy = 4985.2518 kcal/mol (4982.3603 without restraints) Performing minimization step: 4534. Total energy = 4984.5879 kcal/mol (4981.6968 without restraints) Performing minimization step: 4535. Total energy = 4983.9245 kcal/mol (4981.0341 without restraints) Performing minimization step: 4536. Total energy = 4983.2622 kcal/mol (4980.3724 without restraints) Performing minimization step: 4537. Total energy = 4982.6007 kcal/mol (4979.7116 without restraints) Performing minimization step: 4538. Total energy = 4981.9404 kcal/mol (4979.0519 without restraints) Performing minimization step: 4539. Total energy = 4981.2803 kcal/mol (4978.3924 without restraints) Performing minimization step: 4540. Total energy = 4980.6215 kcal/mol (4977.7343 without restraints) Performing minimization step: 4541. Total energy = 4979.9638 kcal/mol (4977.0772 without restraints) Performing minimization step: 4542. Total energy = 4979.3067 kcal/mol (4976.4209 without restraints) Performing minimization step: 4543. Total energy = 4978.6507 kcal/mol (4975.7656 without restraints) Performing minimization step: 4544. Total energy = 4977.9955 kcal/mol (4975.1109 without restraints) Performing minimization step: 4545. Total energy = 4977.3410 kcal/mol (4974.4570 without restraints) Performing minimization step: 4546. Total energy = 4976.6874 kcal/mol (4973.8041 without restraints) Performing minimization step: 4547. Total energy = 4976.0347 kcal/mol (4973.1521 without restraints) Performing minimization step: 4548. Total energy = 4975.3830 kcal/mol (4972.5010 without restraints) Performing minimization step: 4549. Total energy = 4974.7317 kcal/mol (4971.8503 without restraints) Performing minimization step: 4550. Total energy = 4974.0816 kcal/mol (4971.2009 without restraints) Performing minimization step: 4551. Total energy = 4973.4325 kcal/mol (4970.5524 without restraints) Performing minimization step: 4552. Total energy = 4972.7843 kcal/mol (4969.9050 without restraints) Performing minimization step: 4553. Total energy = 4972.1370 kcal/mol (4969.2583 without restraints) Performing minimization step: 4554. Total energy = 4971.4903 kcal/mol (4968.6122 without restraints) Performing minimization step: 4555. Total energy = 4970.8445 kcal/mol (4967.9670 without restraints) Performing minimization step: 4556. Total energy = 4970.1997 kcal/mol (4967.3229 without restraints) Performing minimization step: 4557. Total energy = 4969.5557 kcal/mol (4966.6795 without restraints) Performing minimization step: 4558. Total energy = 4968.9125 kcal/mol (4966.0370 without restraints) Performing minimization step: 4559. Total energy = 4968.2703 kcal/mol (4965.3952 without restraints) Performing minimization step: 4560. Total energy = 4967.6289 kcal/mol (4964.7547 without restraints) Performing minimization step: 4561. Total energy = 4966.9885 kcal/mol (4964.1149 without restraints) Performing minimization step: 4562. Total energy = 4966.3488 kcal/mol (4963.4759 without restraints) Performing minimization step: 4563. Total energy = 4965.7103 kcal/mol (4962.8380 without restraints) Performing minimization step: 4564. Total energy = 4965.0724 kcal/mol (4962.2008 without restraints) Performing minimization step: 4565. Total energy = 4964.4354 kcal/mol (4961.5644 without restraints) Performing minimization step: 4566. Total energy = 4963.7992 kcal/mol (4960.9288 without restraints) Performing minimization step: 4567. Total energy = 4963.1638 kcal/mol (4960.2941 without restraints) Performing minimization step: 4568. Total energy = 4962.5293 kcal/mol (4959.6603 without restraints) Performing minimization step: 4569. Total energy = 4961.8957 kcal/mol (4959.0273 without restraints) Performing minimization step: 4570. Total energy = 4961.2631 kcal/mol (4958.3954 without restraints) Performing minimization step: 4571. Total energy = 4960.6312 kcal/mol (4957.7641 without restraints) Performing minimization step: 4572. Total energy = 4960.0001 kcal/mol (4957.1337 without restraints) Performing minimization step: 4573. Total energy = 4959.3699 kcal/mol (4956.5041 without restraints) Performing minimization step: 4574. Total energy = 4958.7408 kcal/mol (4955.8755 without restraints) Performing minimization step: 4575. Total energy = 4958.1123 kcal/mol (4955.2478 without restraints) Performing minimization step: 4576. Total energy = 4957.4849 kcal/mol (4954.6210 without restraints) Performing minimization step: 4577. Total energy = 4956.8585 kcal/mol (4953.9954 without restraints) Performing minimization step: 4578. Total energy = 4956.2326 kcal/mol (4953.3701 without restraints) Performing minimization step: 4579. Total energy = 4955.6075 kcal/mol (4952.7456 without restraints) Performing minimization step: 4580. Total energy = 4954.9832 kcal/mol (4952.1217 without restraints) Performing minimization step: 4581. Total energy = 4954.3594 kcal/mol (4951.4987 without restraints) Performing minimization step: 4582. Total energy = 4953.7366 kcal/mol (4950.8765 without restraints) Performing minimization step: 4583. Total energy = 4953.1146 kcal/mol (4950.2552 without restraints) Performing minimization step: 4584. Total energy = 4952.4941 kcal/mol (4949.6353 without restraints) Performing minimization step: 4585. Total energy = 4951.8737 kcal/mol (4949.0154 without restraints) Performing minimization step: 4586. Total energy = 4951.2542 kcal/mol (4948.3968 without restraints) Performing minimization step: 4587. Total energy = 4950.6358 kcal/mol (4947.7790 without restraints) Performing minimization step: 4588. Total energy = 4950.0182 kcal/mol (4947.1620 without restraints) Performing minimization step: 4589. Total energy = 4949.4016 kcal/mol (4946.5460 without restraints) Performing minimization step: 4590. Total energy = 4948.7856 kcal/mol (4945.9307 without restraints) Performing minimization step: 4591. Total energy = 4948.1709 kcal/mol (4945.3167 without restraints) Performing minimization step: 4592. Total energy = 4947.5571 kcal/mol (4944.7035 without restraints) Performing minimization step: 4593. Total energy = 4946.9440 kcal/mol (4944.0910 without restraints) Performing minimization step: 4594. Total energy = 4946.3315 kcal/mol (4943.4792 without restraints) Performing minimization step: 4595. Total energy = 4945.7197 kcal/mol (4942.8680 without restraints) Performing minimization step: 4596. Total energy = 4945.1090 kcal/mol (4942.2579 without restraints) Performing minimization step: 4597. Total energy = 4944.4987 kcal/mol (4941.6483 without restraints) Performing minimization step: 4598. Total energy = 4943.8896 kcal/mol (4941.0398 without restraints) Performing minimization step: 4599. Total energy = 4943.2809 kcal/mol (4940.4318 without restraints) Performing minimization step: 4600. Total energy = 4942.6732 kcal/mol (4939.8247 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4942.0664 kcal/mol (4939.2185 without restraints) Performing minimization step: 4602. Total energy = 4941.4605 kcal/mol (4938.6133 without restraints) Performing minimization step: 4603. Total energy = 4940.8553 kcal/mol (4938.0087 without restraints) Performing minimization step: 4604. Total energy = 4940.2507 kcal/mol (4937.4048 without restraints) Performing minimization step: 4605. Total energy = 4939.6469 kcal/mol (4936.8016 without restraints) Performing minimization step: 4606. Total energy = 4939.0441 kcal/mol (4936.1994 without restraints) Performing minimization step: 4607. Total energy = 4938.4421 kcal/mol (4935.5981 without restraints) Performing minimization step: 4608. Total energy = 4937.8410 kcal/mol (4934.9976 without restraints) Performing minimization step: 4609. Total energy = 4937.2410 kcal/mol (4934.3983 without restraints) Performing minimization step: 4610. Total energy = 4936.6415 kcal/mol (4933.7994 without restraints) Performing minimization step: 4611. Total energy = 4936.0428 kcal/mol (4933.2013 without restraints) Performing minimization step: 4612. Total energy = 4935.4447 kcal/mol (4932.6038 without restraints) Performing minimization step: 4613. Total energy = 4934.8475 kcal/mol (4932.0073 without restraints) Performing minimization step: 4614. Total energy = 4934.2516 kcal/mol (4931.4121 without restraints) Performing minimization step: 4615. Total energy = 4933.6562 kcal/mol (4930.8173 without restraints) Performing minimization step: 4616. Total energy = 4933.0615 kcal/mol (4930.2232 without restraints) Performing minimization step: 4617. Total energy = 4932.4679 kcal/mol (4929.6304 without restraints) Performing minimization step: 4618. Total energy = 4931.8749 kcal/mol (4929.0379 without restraints) Performing minimization step: 4619. Total energy = 4931.2826 kcal/mol (4928.4463 without restraints) Performing minimization step: 4620. Total energy = 4930.6914 kcal/mol (4927.8557 without restraints) Performing minimization step: 4621. Total energy = 4930.1010 kcal/mol (4927.2659 without restraints) Performing minimization step: 4622. Total energy = 4929.5113 kcal/mol (4926.6769 without restraints) Performing minimization step: 4623. Total energy = 4928.9222 kcal/mol (4926.0884 without restraints) Performing minimization step: 4624. Total energy = 4928.3339 kcal/mol (4925.5008 without restraints) Performing minimization step: 4625. Total energy = 4927.7465 kcal/mol (4924.9139 without restraints) Performing minimization step: 4626. Total energy = 4927.1598 kcal/mol (4924.3279 without restraints) Performing minimization step: 4627. Total energy = 4926.5738 kcal/mol (4923.7426 without restraints) Performing minimization step: 4628. Total energy = 4925.9887 kcal/mol (4923.1581 without restraints) Performing minimization step: 4629. Total energy = 4925.4044 kcal/mol (4922.5744 without restraints) Performing minimization step: 4630. Total energy = 4924.8207 kcal/mol (4921.9913 without restraints) Performing minimization step: 4631. Total energy = 4924.2379 kcal/mol (4921.4093 without restraints) Performing minimization step: 4632. Total energy = 4923.6560 kcal/mol (4920.8279 without restraints) Performing minimization step: 4633. Total energy = 4923.0750 kcal/mol (4920.2476 without restraints) Performing minimization step: 4634. Total energy = 4922.4947 kcal/mol (4919.6679 without restraints) Performing minimization step: 4635. Total energy = 4921.9151 kcal/mol (4919.0890 without restraints) Performing minimization step: 4636. Total energy = 4921.3363 kcal/mol (4918.5108 without restraints) Performing minimization step: 4637. Total energy = 4920.7582 kcal/mol (4917.9334 without restraints) Performing minimization step: 4638. Total energy = 4920.1810 kcal/mol (4917.3568 without restraints) Performing minimization step: 4639. Total energy = 4919.6046 kcal/mol (4916.7809 without restraints) Performing minimization step: 4640. Total energy = 4919.0289 kcal/mol (4916.2059 without restraints) Performing minimization step: 4641. Total energy = 4918.4542 kcal/mol (4915.6319 without restraints) Performing minimization step: 4642. Total energy = 4917.8801 kcal/mol (4915.0584 without restraints) Performing minimization step: 4643. Total energy = 4917.3068 kcal/mol (4914.4857 without restraints) Performing minimization step: 4644. Total energy = 4916.7344 kcal/mol (4913.9140 without restraints) Performing minimization step: 4645. Total energy = 4916.1631 kcal/mol (4913.3432 without restraints) Performing minimization step: 4646. Total energy = 4915.5921 kcal/mol (4912.7729 without restraints) Performing minimization step: 4647. Total energy = 4915.0219 kcal/mol (4912.2033 without restraints) Performing minimization step: 4648. Total energy = 4914.4527 kcal/mol (4911.6348 without restraints) Performing minimization step: 4649. Total energy = 4913.8839 kcal/mol (4911.0667 without restraints) Performing minimization step: 4650. Total energy = 4913.3160 kcal/mol (4910.4994 without restraints) Performing minimization step: 4651. Total energy = 4912.7488 kcal/mol (4909.9328 without restraints) Performing minimization step: 4652. Total energy = 4912.1822 kcal/mol (4909.3669 without restraints) Performing minimization step: 4653. Total energy = 4911.6168 kcal/mol (4908.8021 without restraints) Performing minimization step: 4654. Total energy = 4911.0520 kcal/mol (4908.2379 without restraints) Performing minimization step: 4655. Total energy = 4910.4882 kcal/mol (4907.6747 without restraints) Performing minimization step: 4656. Total energy = 4909.9249 kcal/mol (4907.1120 without restraints) Performing minimization step: 4657. Total energy = 4909.3620 kcal/mol (4906.5497 without restraints) Performing minimization step: 4658. Total energy = 4908.8003 kcal/mol (4905.9888 without restraints) Performing minimization step: 4659. Total energy = 4908.2396 kcal/mol (4905.4287 without restraints) Performing minimization step: 4660. Total energy = 4907.6796 kcal/mol (4904.8693 without restraints) Performing minimization step: 4661. Total energy = 4907.1201 kcal/mol (4904.3104 without restraints) Performing minimization step: 4662. Total energy = 4906.5614 kcal/mol (4903.7523 without restraints) Performing minimization step: 4663. Total energy = 4906.0038 kcal/mol (4903.1953 without restraints) Performing minimization step: 4664. Total energy = 4905.4469 kcal/mol (4902.6391 without restraints) Performing minimization step: 4665. Total energy = 4904.8902 kcal/mol (4902.0828 without restraints) Performing minimization step: 4666. Total energy = 4904.3342 kcal/mol (4901.5276 without restraints) Performing minimization step: 4667. Total energy = 4903.7792 kcal/mol (4900.9733 without restraints) Performing minimization step: 4668. Total energy = 4903.2250 kcal/mol (4900.4197 without restraints) Performing minimization step: 4669. Total energy = 4902.6715 kcal/mol (4899.8668 without restraints) Performing minimization step: 4670. Total energy = 4902.1186 kcal/mol (4899.3145 without restraints) Performing minimization step: 4671. Total energy = 4901.5666 kcal/mol (4898.7632 without restraints) Performing minimization step: 4672. Total energy = 4901.0154 kcal/mol (4898.2126 without restraints) Performing minimization step: 4673. Total energy = 4900.4647 kcal/mol (4897.6625 without restraints) Performing minimization step: 4674. Total energy = 4899.9149 kcal/mol (4897.1134 without restraints) Performing minimization step: 4675. Total energy = 4899.3659 kcal/mol (4896.5650 without restraints) Performing minimization step: 4676. Total energy = 4898.8175 kcal/mol (4896.0173 without restraints) Performing minimization step: 4677. Total energy = 4898.2704 kcal/mol (4895.4709 without restraints) Performing minimization step: 4678. Total energy = 4897.7237 kcal/mol (4894.9247 without restraints) Performing minimization step: 4679. Total energy = 4897.1777 kcal/mol (4894.3794 without restraints) Performing minimization step: 4680. Total energy = 4896.6323 kcal/mol (4893.8344 without restraints) Performing minimization step: 4681. Total energy = 4896.0877 kcal/mol (4893.2905 without restraints) Performing minimization step: 4682. Total energy = 4895.5442 kcal/mol (4892.7477 without restraints) Performing minimization step: 4683. Total energy = 4895.0014 kcal/mol (4892.2055 without restraints) Performing minimization step: 4684. Total energy = 4894.4587 kcal/mol (4891.6635 without restraints) Performing minimization step: 4685. Total energy = 4893.9172 kcal/mol (4891.1227 without restraints) Performing minimization step: 4686. Total energy = 4893.3765 kcal/mol (4890.5825 without restraints) Performing minimization step: 4687. Total energy = 4892.8362 kcal/mol (4890.0428 without restraints) Performing minimization step: 4688. Total energy = 4892.2968 kcal/mol (4889.5041 without restraints) Performing minimization step: 4689. Total energy = 4891.7578 kcal/mol (4888.9657 without restraints) Performing minimization step: 4690. Total energy = 4891.2202 kcal/mol (4888.4287 without restraints) Performing minimization step: 4691. Total energy = 4890.6830 kcal/mol (4887.8921 without restraints) Performing minimization step: 4692. Total energy = 4890.1467 kcal/mol (4887.3564 without restraints) Performing minimization step: 4693. Total energy = 4889.6108 kcal/mol (4886.8214 without restraints) Performing minimization step: 4694. Total energy = 4889.0760 kcal/mol (4886.2870 without restraints) Performing minimization step: 4695. Total energy = 4888.5419 kcal/mol (4885.7535 without restraints) Performing minimization step: 4696. Total energy = 4888.0083 kcal/mol (4885.2205 without restraints) Performing minimization step: 4697. Total energy = 4887.4752 kcal/mol (4884.6881 without restraints) Performing minimization step: 4698. Total energy = 4886.9431 kcal/mol (4884.1566 without restraints) Performing minimization step: 4699. Total energy = 4886.4116 kcal/mol (4883.6258 without restraints) Performing minimization step: 4700. Total energy = 4885.8811 kcal/mol (4883.0959 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4885.3514 kcal/mol (4882.5668 without restraints) Performing minimization step: 4702. Total energy = 4884.8221 kcal/mol (4882.0381 without restraints) Performing minimization step: 4703. Total energy = 4884.2936 kcal/mol (4881.5102 without restraints) Performing minimization step: 4704. Total energy = 4883.7661 kcal/mol (4880.9836 without restraints) Performing minimization step: 4705. Total energy = 4883.2392 kcal/mol (4880.4571 without restraints) Performing minimization step: 4706. Total energy = 4882.7127 kcal/mol (4879.9312 without restraints) Performing minimization step: 4707. Total energy = 4882.1875 kcal/mol (4879.4066 without restraints) Performing minimization step: 4708. Total energy = 4881.6625 kcal/mol (4878.8822 without restraints) Performing minimization step: 4709. Total energy = 4881.1380 kcal/mol (4878.3584 without restraints) Performing minimization step: 4710. Total energy = 4880.6144 kcal/mol (4877.8354 without restraints) Performing minimization step: 4711. Total energy = 4880.0913 kcal/mol (4877.3130 without restraints) Performing minimization step: 4712. Total energy = 4879.5692 kcal/mol (4876.7914 without restraints) Performing minimization step: 4713. Total energy = 4879.0478 kcal/mol (4876.2707 without restraints) Performing minimization step: 4714. Total energy = 4878.5271 kcal/mol (4875.7506 without restraints) Performing minimization step: 4715. Total energy = 4878.0071 kcal/mol (4875.2312 without restraints) Performing minimization step: 4716. Total energy = 4877.4877 kcal/mol (4874.7124 without restraints) Performing minimization step: 4717. Total energy = 4876.9691 kcal/mol (4874.1945 without restraints) Performing minimization step: 4718. Total energy = 4876.4513 kcal/mol (4873.6773 without restraints) Performing minimization step: 4719. Total energy = 4875.9339 kcal/mol (4873.1605 without restraints) Performing minimization step: 4720. Total energy = 4875.4174 kcal/mol (4872.6446 without restraints) Performing minimization step: 4721. Total energy = 4874.9016 kcal/mol (4872.1295 without restraints) Performing minimization step: 4722. Total energy = 4874.3866 kcal/mol (4871.6153 without restraints) Performing minimization step: 4723. Total energy = 4873.8723 kcal/mol (4871.1014 without restraints) Performing minimization step: 4724. Total energy = 4873.3586 kcal/mol (4870.5883 without restraints) Performing minimization step: 4725. Total energy = 4872.8455 kcal/mol (4870.0758 without restraints) Performing minimization step: 4726. Total energy = 4872.3331 kcal/mol (4869.5640 without restraints) Performing minimization step: 4727. Total energy = 4871.8216 kcal/mol (4869.0534 without restraints) Performing minimization step: 4728. Total energy = 4871.3106 kcal/mol (4868.5428 without restraints) Performing minimization step: 4729. Total energy = 4870.8004 kcal/mol (4868.0331 without restraints) Performing minimization step: 4730. Total energy = 4870.2907 kcal/mol (4867.5241 without restraints) Performing minimization step: 4731. Total energy = 4869.7818 kcal/mol (4867.0158 without restraints) Performing minimization step: 4732. Total energy = 4869.2736 kcal/mol (4866.5083 without restraints) Performing minimization step: 4733. Total energy = 4868.7661 kcal/mol (4866.0014 without restraints) Performing minimization step: 4734. Total energy = 4868.2590 kcal/mol (4865.4949 without restraints) Performing minimization step: 4735. Total energy = 4867.7529 kcal/mol (4864.9894 without restraints) Performing minimization step: 4736. Total energy = 4867.2473 kcal/mol (4864.4844 without restraints) Performing minimization step: 4737. Total energy = 4866.7427 kcal/mol (4863.9805 without restraints) Performing minimization step: 4738. Total energy = 4866.2392 kcal/mol (4863.4776 without restraints) Performing minimization step: 4739. Total energy = 4865.7355 kcal/mol (4862.9745 without restraints) Performing minimization step: 4740. Total energy = 4865.2325 kcal/mol (4862.4721 without restraints) Performing minimization step: 4741. Total energy = 4864.7305 kcal/mol (4861.9707 without restraints) Performing minimization step: 4742. Total energy = 4864.2291 kcal/mol (4861.4699 without restraints) Performing minimization step: 4743. Total energy = 4863.7283 kcal/mol (4860.9697 without restraints) Performing minimization step: 4744. Total energy = 4863.2282 kcal/mol (4860.4703 without restraints) Performing minimization step: 4745. Total energy = 4862.7292 kcal/mol (4859.9719 without restraints) Performing minimization step: 4746. Total energy = 4862.2306 kcal/mol (4859.4739 without restraints) Performing minimization step: 4747. Total energy = 4861.7325 kcal/mol (4858.9764 without restraints) Performing minimization step: 4748. Total energy = 4861.2354 kcal/mol (4858.4799 without restraints) Performing minimization step: 4749. Total energy = 4860.7387 kcal/mol (4857.9838 without restraints) Performing minimization step: 4750. Total energy = 4860.2426 kcal/mol (4857.4883 without restraints) Performing minimization step: 4751. Total energy = 4859.7474 kcal/mol (4856.9937 without restraints) Performing minimization step: 4752. Total energy = 4859.2527 kcal/mol (4856.4996 without restraints) Performing minimization step: 4753. Total energy = 4858.7586 kcal/mol (4856.0062 without restraints) Performing minimization step: 4754. Total energy = 4858.2650 kcal/mol (4855.5131 without restraints) Performing minimization step: 4755. Total energy = 4857.7722 kcal/mol (4855.0210 without restraints) Performing minimization step: 4756. Total energy = 4857.2802 kcal/mol (4854.5296 without restraints) Performing minimization step: 4757. Total energy = 4856.7887 kcal/mol (4854.0387 without restraints) Performing minimization step: 4758. Total energy = 4856.2980 kcal/mol (4853.5486 without restraints) Performing minimization step: 4759. Total energy = 4855.8079 kcal/mol (4853.0591 without restraints) Performing minimization step: 4760. Total energy = 4855.3184 kcal/mol (4852.5703 without restraints) Performing minimization step: 4761. Total energy = 4854.8301 kcal/mol (4852.0825 without restraints) Performing minimization step: 4762. Total energy = 4854.3422 kcal/mol (4851.5953 without restraints) Performing minimization step: 4763. Total energy = 4853.8548 kcal/mol (4851.1085 without restraints) Performing minimization step: 4764. Total energy = 4853.3680 kcal/mol (4850.6223 without restraints) Performing minimization step: 4765. Total energy = 4852.8818 kcal/mol (4850.1367 without restraints) Performing minimization step: 4766. Total energy = 4852.3963 kcal/mol (4849.6518 without restraints) Performing minimization step: 4767. Total energy = 4851.9112 kcal/mol (4849.1674 without restraints) Performing minimization step: 4768. Total energy = 4851.4273 kcal/mol (4848.6840 without restraints) Performing minimization step: 4769. Total energy = 4850.9437 kcal/mol (4848.2010 without restraints) Performing minimization step: 4770. Total energy = 4850.4607 kcal/mol (4847.7187 without restraints) Performing minimization step: 4771. Total energy = 4849.9784 kcal/mol (4847.2369 without restraints) Performing minimization step: 4772. Total energy = 4849.4967 kcal/mol (4846.7559 without restraints) Performing minimization step: 4773. Total energy = 4849.0157 kcal/mol (4846.2755 without restraints) Performing minimization step: 4774. Total energy = 4848.5358 kcal/mol (4845.7962 without restraints) Performing minimization step: 4775. Total energy = 4848.0562 kcal/mol (4845.3172 without restraints) Performing minimization step: 4776. Total energy = 4847.5773 kcal/mol (4844.8390 without restraints) Performing minimization step: 4777. Total energy = 4847.0991 kcal/mol (4844.3613 without restraints) Performing minimization step: 4778. Total energy = 4846.6213 kcal/mol (4843.8842 without restraints) Performing minimization step: 4779. Total energy = 4846.1441 kcal/mol (4843.4075 without restraints) Performing minimization step: 4780. Total energy = 4845.6677 kcal/mol (4842.9317 without restraints) Performing minimization step: 4781. Total energy = 4845.1916 kcal/mol (4842.4563 without restraints) Performing minimization step: 4782. Total energy = 4844.7164 kcal/mol (4841.9817 without restraints) Performing minimization step: 4783. Total energy = 4844.2417 kcal/mol (4841.5077 without restraints) Performing minimization step: 4784. Total energy = 4843.7679 kcal/mol (4841.0343 without restraints) Performing minimization step: 4785. Total energy = 4843.2949 kcal/mol (4840.5621 without restraints) Performing minimization step: 4786. Total energy = 4842.8224 kcal/mol (4840.0902 without restraints) Performing minimization step: 4787. Total energy = 4842.3502 kcal/mol (4839.6184 without restraints) Performing minimization step: 4788. Total energy = 4841.8790 kcal/mol (4839.1479 without restraints) Performing minimization step: 4789. Total energy = 4841.4084 kcal/mol (4838.6779 without restraints) Performing minimization step: 4790. Total energy = 4840.9382 kcal/mol (4838.2083 without restraints) Performing minimization step: 4791. Total energy = 4840.4687 kcal/mol (4837.7394 without restraints) Performing minimization step: 4792. Total energy = 4839.9998 kcal/mol (4837.2712 without restraints) Performing minimization step: 4793. Total energy = 4839.5316 kcal/mol (4836.8035 without restraints) Performing minimization step: 4794. Total energy = 4839.0639 kcal/mol (4836.3364 without restraints) Performing minimization step: 4795. Total energy = 4838.5967 kcal/mol (4835.8698 without restraints) Performing minimization step: 4796. Total energy = 4838.1305 kcal/mol (4835.4042 without restraints) Performing minimization step: 4797. Total energy = 4837.6649 kcal/mol (4834.9392 without restraints) Performing minimization step: 4798. Total energy = 4837.1999 kcal/mol (4834.4748 without restraints) Performing minimization step: 4799. Total energy = 4836.7354 kcal/mol (4834.0110 without restraints) Performing minimization step: 4800. Total energy = 4836.2713 kcal/mol (4833.5475 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 4835.8082 kcal/mol (4833.0850 without restraints) Performing minimization step: 4802. Total energy = 4835.3455 kcal/mol (4832.6229 without restraints) Performing minimization step: 4803. Total energy = 4834.8837 kcal/mol (4832.1616 without restraints) Performing minimization step: 4804. Total energy = 4834.4222 kcal/mol (4831.7007 without restraints) Performing minimization step: 4805. Total energy = 4833.9613 kcal/mol (4831.2403 without restraints) Performing minimization step: 4806. Total energy = 4833.5011 kcal/mol (4830.7808 without restraints) Performing minimization step: 4807. Total energy = 4833.0415 kcal/mol (4830.3218 without restraints) Performing minimization step: 4808. Total energy = 4832.5824 kcal/mol (4829.8633 without restraints) Performing minimization step: 4809. Total energy = 4832.1241 kcal/mol (4829.4056 without restraints) Performing minimization step: 4810. Total energy = 4831.6663 kcal/mol (4828.9483 without restraints) Performing minimization step: 4811. Total energy = 4831.2087 kcal/mol (4828.4915 without restraints) Performing minimization step: 4812. Total energy = 4830.7521 kcal/mol (4828.0355 without restraints) Performing minimization step: 4813. Total energy = 4830.2956 kcal/mol (4827.5794 without restraints) Performing minimization step: 4814. Total energy = 4829.8398 kcal/mol (4827.1243 without restraints) Performing minimization step: 4815. Total energy = 4829.3850 kcal/mol (4826.6701 without restraints) Performing minimization step: 4816. Total energy = 4828.9306 kcal/mol (4826.2163 without restraints) Performing minimization step: 4817. Total energy = 4828.4770 kcal/mol (4825.7635 without restraints) Performing minimization step: 4818. Total energy = 4828.0242 kcal/mol (4825.3111 without restraints) Performing minimization step: 4819. Total energy = 4827.5718 kcal/mol (4824.8593 without restraints) Performing minimization step: 4820. Total energy = 4827.1200 kcal/mol (4824.4081 without restraints) Performing minimization step: 4821. Total energy = 4826.6690 kcal/mol (4823.9577 without restraints) Performing minimization step: 4822. Total energy = 4826.2184 kcal/mol (4823.5077 without restraints) Performing minimization step: 4823. Total energy = 4825.7684 kcal/mol (4823.0583 without restraints) Performing minimization step: 4824. Total energy = 4825.3188 kcal/mol (4822.6093 without restraints) Performing minimization step: 4825. Total energy = 4824.8703 kcal/mol (4822.1614 without restraints) Performing minimization step: 4826. Total energy = 4824.4220 kcal/mol (4821.7137 without restraints) Performing minimization step: 4827. Total energy = 4823.9743 kcal/mol (4821.2666 without restraints) Performing minimization step: 4828. Total energy = 4823.5273 kcal/mol (4820.8202 without restraints) Performing minimization step: 4829. Total energy = 4823.0806 kcal/mol (4820.3741 without restraints) Performing minimization step: 4830. Total energy = 4822.6346 kcal/mol (4819.9288 without restraints) Performing minimization step: 4831. Total energy = 4822.1894 kcal/mol (4819.4841 without restraints) Performing minimization step: 4832. Total energy = 4821.7450 kcal/mol (4819.0404 without restraints) Performing minimization step: 4833. Total energy = 4821.3010 kcal/mol (4818.5968 without restraints) Performing minimization step: 4834. Total energy = 4820.8576 kcal/mol (4818.1541 without restraints) Performing minimization step: 4835. Total energy = 4820.4149 kcal/mol (4817.7119 without restraints) Performing minimization step: 4836. Total energy = 4819.9725 kcal/mol (4817.2701 without restraints) Performing minimization step: 4837. Total energy = 4819.5309 kcal/mol (4816.8292 without restraints) Performing minimization step: 4838. Total energy = 4819.0898 kcal/mol (4816.3886 without restraints) Performing minimization step: 4839. Total energy = 4818.6495 kcal/mol (4815.9489 without restraints) Performing minimization step: 4840. Total energy = 4818.2095 kcal/mol (4815.5096 without restraints) Performing minimization step: 4841. Total energy = 4817.7702 kcal/mol (4815.0708 without restraints) Performing minimization step: 4842. Total energy = 4817.3313 kcal/mol (4814.6325 without restraints) Performing minimization step: 4843. Total energy = 4816.8930 kcal/mol (4814.1947 without restraints) Performing minimization step: 4844. Total energy = 4816.4552 kcal/mol (4813.7576 without restraints) Performing minimization step: 4845. Total energy = 4816.0181 kcal/mol (4813.3211 without restraints) Performing minimization step: 4846. Total energy = 4815.5814 kcal/mol (4812.8849 without restraints) Performing minimization step: 4847. Total energy = 4815.1453 kcal/mol (4812.4495 without restraints) Performing minimization step: 4848. Total energy = 4814.7101 kcal/mol (4812.0148 without restraints) Performing minimization step: 4849. Total energy = 4814.2752 kcal/mol (4811.5805 without restraints) Performing minimization step: 4850. Total energy = 4813.8409 kcal/mol (4811.1468 without restraints) Performing minimization step: 4851. Total energy = 4813.4071 kcal/mol (4810.7136 without restraints) Performing minimization step: 4852. Total energy = 4812.9738 kcal/mol (4810.2808 without restraints) Performing minimization step: 4853. Total energy = 4812.5411 kcal/mol (4809.8488 without restraints) Performing minimization step: 4854. Total energy = 4812.1091 kcal/mol (4809.4173 without restraints) Performing minimization step: 4855. Total energy = 4811.6776 kcal/mol (4808.9865 without restraints) Performing minimization step: 4856. Total energy = 4811.2467 kcal/mol (4808.5561 without restraints) Performing minimization step: 4857. Total energy = 4810.8161 kcal/mol (4808.1262 without restraints) Performing minimization step: 4858. Total energy = 4810.3865 kcal/mol (4807.6971 without restraints) Performing minimization step: 4859. Total energy = 4809.9573 kcal/mol (4807.2685 without restraints) Performing minimization step: 4860. Total energy = 4809.5287 kcal/mol (4806.8403 without restraints) Performing minimization step: 4861. Total energy = 4809.1009 kcal/mol (4806.4133 without restraints) Performing minimization step: 4862. Total energy = 4808.6739 kcal/mol (4805.9869 without restraints) Performing minimization step: 4863. Total energy = 4808.2470 kcal/mol (4805.5605 without restraints) Performing minimization step: 4864. Total energy = 4807.8205 kcal/mol (4805.1346 without restraints) Performing minimization step: 4865. Total energy = 4807.3947 kcal/mol (4804.7094 without restraints) Performing minimization step: 4866. Total energy = 4806.9701 kcal/mol (4804.2854 without restraints) Performing minimization step: 4867. Total energy = 4806.5454 kcal/mol (4803.8614 without restraints) Performing minimization step: 4868. Total energy = 4806.1212 kcal/mol (4803.4377 without restraints) Performing minimization step: 4869. Total energy = 4805.6975 kcal/mol (4803.0145 without restraints) Performing minimization step: 4870. Total energy = 4805.2747 kcal/mol (4802.5923 without restraints) Performing minimization step: 4871. Total energy = 4804.8520 kcal/mol (4802.1701 without restraints) Performing minimization step: 4872. Total energy = 4804.4297 kcal/mol (4801.7485 without restraints) Performing minimization step: 4873. Total energy = 4804.0084 kcal/mol (4801.3277 without restraints) Performing minimization step: 4874. Total energy = 4803.5874 kcal/mol (4800.9073 without restraints) Performing minimization step: 4875. Total energy = 4803.1672 kcal/mol (4800.4877 without restraints) Performing minimization step: 4876. Total energy = 4802.7475 kcal/mol (4800.0686 without restraints) Performing minimization step: 4877. Total energy = 4802.3282 kcal/mol (4799.6500 without restraints) Performing minimization step: 4878. Total energy = 4801.9100 kcal/mol (4799.2322 without restraints) Performing minimization step: 4879. Total energy = 4801.4918 kcal/mol (4798.8146 without restraints) Performing minimization step: 4880. Total energy = 4801.0741 kcal/mol (4798.3976 without restraints) Performing minimization step: 4881. Total energy = 4800.6570 kcal/mol (4797.9810 without restraints) Performing minimization step: 4882. Total energy = 4800.2401 kcal/mol (4797.5647 without restraints) Performing minimization step: 4883. Total energy = 4799.8241 kcal/mol (4797.1493 without restraints) Performing minimization step: 4884. Total energy = 4799.4085 kcal/mol (4796.7343 without restraints) Performing minimization step: 4885. Total energy = 4798.9934 kcal/mol (4796.3197 without restraints) Performing minimization step: 4886. Total energy = 4798.5788 kcal/mol (4795.9057 without restraints) Performing minimization step: 4887. Total energy = 4798.1651 kcal/mol (4795.4925 without restraints) Performing minimization step: 4888. Total energy = 4797.7516 kcal/mol (4795.0797 without restraints) Performing minimization step: 4889. Total energy = 4797.3387 kcal/mol (4794.6673 without restraints) Performing minimization step: 4890. Total energy = 4796.9261 kcal/mol (4794.2553 without restraints) Performing minimization step: 4891. Total energy = 4796.5145 kcal/mol (4793.8442 without restraints) Performing minimization step: 4892. Total energy = 4796.1036 kcal/mol (4793.4339 without restraints) Performing minimization step: 4893. Total energy = 4795.6926 kcal/mol (4793.0235 without restraints) Performing minimization step: 4894. Total energy = 4795.2823 kcal/mol (4792.6138 without restraints) Performing minimization step: 4895. Total energy = 4794.8726 kcal/mol (4792.2046 without restraints) Performing minimization step: 4896. Total energy = 4794.4639 kcal/mol (4791.7966 without restraints) Performing minimization step: 4897. Total energy = 4794.0551 kcal/mol (4791.3883 without restraints) Performing minimization step: 4898. Total energy = 4793.6470 kcal/mol (4790.9807 without restraints) Performing minimization step: 4899. Total energy = 4793.2393 kcal/mol (4790.5737 without restraints) Performing minimization step: 4900. Total energy = 4792.8321 kcal/mol (4790.1669 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 4792.4253 kcal/mol (4789.7608 without restraints) Performing minimization step: 4902. Total energy = 4792.0194 kcal/mol (4789.3555 without restraints) Performing minimization step: 4903. Total energy = 4791.6138 kcal/mol (4788.9505 without restraints) Performing minimization step: 4904. Total energy = 4791.2091 kcal/mol (4788.5464 without restraints) Performing minimization step: 4905. Total energy = 4790.8045 kcal/mol (4788.1423 without restraints) Performing minimization step: 4906. Total energy = 4790.4005 kcal/mol (4787.7388 without restraints) Performing minimization step: 4907. Total energy = 4789.9972 kcal/mol (4787.3361 without restraints) Performing minimization step: 4908. Total energy = 4789.5940 kcal/mol (4786.9335 without restraints) Performing minimization step: 4909. Total energy = 4789.1914 kcal/mol (4786.5314 without restraints) Performing minimization step: 4910. Total energy = 4788.7894 kcal/mol (4786.1299 without restraints) Performing minimization step: 4911. Total energy = 4788.3880 kcal/mol (4785.7292 without restraints) Performing minimization step: 4912. Total energy = 4787.9870 kcal/mol (4785.3288 without restraints) Performing minimization step: 4913. Total energy = 4787.5867 kcal/mol (4784.9291 without restraints) Performing minimization step: 4914. Total energy = 4787.1868 kcal/mol (4784.5297 without restraints) Performing minimization step: 4915. Total energy = 4786.7873 kcal/mol (4784.1308 without restraints) Performing minimization step: 4916. Total energy = 4786.3884 kcal/mol (4783.7324 without restraints) Performing minimization step: 4917. Total energy = 4785.9900 kcal/mol (4783.3346 without restraints) Performing minimization step: 4918. Total energy = 4785.5921 kcal/mol (4782.9373 without restraints) Performing minimization step: 4919. Total energy = 4785.1945 kcal/mol (4782.5402 without restraints) Performing minimization step: 4920. Total energy = 4784.7975 kcal/mol (4782.1437 without restraints) Performing minimization step: 4921. Total energy = 4784.4010 kcal/mol (4781.7479 without restraints) Performing minimization step: 4922. Total energy = 4784.0051 kcal/mol (4781.3525 without restraints) Performing minimization step: 4923. Total energy = 4783.6097 kcal/mol (4780.9577 without restraints) Performing minimization step: 4924. Total energy = 4783.2145 kcal/mol (4780.5631 without restraints) Performing minimization step: 4925. Total energy = 4782.8199 kcal/mol (4780.1690 without restraints) Performing minimization step: 4926. Total energy = 4782.4260 kcal/mol (4779.7756 without restraints) Performing minimization step: 4927. Total energy = 4782.0328 kcal/mol (4779.3830 without restraints) Performing minimization step: 4928. Total energy = 4781.6401 kcal/mol (4778.9909 without restraints) Performing minimization step: 4929. Total energy = 4781.2476 kcal/mol (4778.5990 without restraints) Performing minimization step: 4930. Total energy = 4780.8557 kcal/mol (4778.2076 without restraints) Performing minimization step: 4931. Total energy = 4780.4641 kcal/mol (4777.8165 without restraints) Performing minimization step: 4932. Total energy = 4780.0731 kcal/mol (4777.4261 without restraints) Performing minimization step: 4933. Total energy = 4779.6828 kcal/mol (4777.0364 without restraints) Performing minimization step: 4934. Total energy = 4779.2926 kcal/mol (4776.6468 without restraints) Performing minimization step: 4935. Total energy = 4778.9036 kcal/mol (4776.2583 without restraints) Performing minimization step: 4936. Total energy = 4778.5146 kcal/mol (4775.8699 without restraints) Performing minimization step: 4937. Total energy = 4778.1261 kcal/mol (4775.4819 without restraints) Performing minimization step: 4938. Total energy = 4777.7381 kcal/mol (4775.0945 without restraints) Performing minimization step: 4939. Total energy = 4777.3508 kcal/mol (4774.7078 without restraints) Performing minimization step: 4940. Total energy = 4776.9636 kcal/mol (4774.3211 without restraints) Performing minimization step: 4941. Total energy = 4776.5770 kcal/mol (4773.9352 without restraints) Performing minimization step: 4942. Total energy = 4776.1910 kcal/mol (4773.5497 without restraints) Performing minimization step: 4943. Total energy = 4775.8050 kcal/mol (4773.1642 without restraints) Performing minimization step: 4944. Total energy = 4775.4196 kcal/mol (4772.7793 without restraints) Performing minimization step: 4945. Total energy = 4775.0351 kcal/mol (4772.3954 without restraints) Performing minimization step: 4946. Total energy = 4774.6509 kcal/mol (4772.0118 without restraints) Performing minimization step: 4947. Total energy = 4774.2676 kcal/mol (4771.6291 without restraints) Performing minimization step: 4948. Total energy = 4773.8846 kcal/mol (4771.2467 without restraints) Performing minimization step: 4949. Total energy = 4773.5018 kcal/mol (4770.8643 without restraints) Performing minimization step: 4950. Total energy = 4773.1196 kcal/mol (4770.4827 without restraints) Performing minimization step: 4951. Total energy = 4772.7379 kcal/mol (4770.1015 without restraints) Performing minimization step: 4952. Total energy = 4772.3564 kcal/mol (4769.7206 without restraints) Performing minimization step: 4953. Total energy = 4771.9756 kcal/mol (4769.3405 without restraints) Performing minimization step: 4954. Total energy = 4771.5952 kcal/mol (4768.9605 without restraints) Performing minimization step: 4955. Total energy = 4771.2153 kcal/mol (4768.5810 without restraints) Performing minimization step: 4956. Total energy = 4770.8358 kcal/mol (4768.2022 without restraints) Performing minimization step: 4957. Total energy = 4770.4568 kcal/mol (4767.8238 without restraints) Performing minimization step: 4958. Total energy = 4770.0784 kcal/mol (4767.4458 without restraints) Performing minimization step: 4959. Total energy = 4769.7005 kcal/mol (4767.0685 without restraints) Performing minimization step: 4960. Total energy = 4769.3230 kcal/mol (4766.6916 without restraints) Performing minimization step: 4961. Total energy = 4768.9460 kcal/mol (4766.3152 without restraints) Performing minimization step: 4962. Total energy = 4768.5692 kcal/mol (4765.9390 without restraints) Performing minimization step: 4963. Total energy = 4768.1932 kcal/mol (4765.5634 without restraints) Performing minimization step: 4964. Total energy = 4767.8176 kcal/mol (4765.1885 without restraints) Performing minimization step: 4965. Total energy = 4767.4424 kcal/mol (4764.8137 without restraints) Performing minimization step: 4966. Total energy = 4767.0677 kcal/mol (4764.4396 without restraints) Performing minimization step: 4967. Total energy = 4766.6937 kcal/mol (4764.0661 without restraints) Performing minimization step: 4968. Total energy = 4766.3198 kcal/mol (4763.6928 without restraints) Performing minimization step: 4969. Total energy = 4765.9465 kcal/mol (4763.3200 without restraints) Performing minimization step: 4970. Total energy = 4765.5741 kcal/mol (4762.9482 without restraints) Performing minimization step: 4971. Total energy = 4765.2017 kcal/mol (4762.5763 without restraints) Performing minimization step: 4972. Total energy = 4764.8299 kcal/mol (4762.2053 without restraints) Performing minimization step: 4973. Total energy = 4764.4586 kcal/mol (4761.8343 without restraints) Performing minimization step: 4974. Total energy = 4764.0875 kcal/mol (4761.4638 without restraints) Performing minimization step: 4975. Total energy = 4763.7171 kcal/mol (4761.0939 without restraints) Performing minimization step: 4976. Total energy = 4763.3476 kcal/mol (4760.7249 without restraints) Performing minimization step: 4977. Total energy = 4762.9782 kcal/mol (4760.3561 without restraints) Performing minimization step: 4978. Total energy = 4762.6090 kcal/mol (4759.9874 without restraints) Performing minimization step: 4979. Total energy = 4762.2406 kcal/mol (4759.6195 without restraints) Performing minimization step: 4980. Total energy = 4761.8723 kcal/mol (4759.2518 without restraints) Performing minimization step: 4981. Total energy = 4761.5044 kcal/mol (4758.8845 without restraints) Performing minimization step: 4982. Total energy = 4761.1376 kcal/mol (4758.5183 without restraints) Performing minimization step: 4983. Total energy = 4760.7707 kcal/mol (4758.1519 without restraints) Performing minimization step: 4984. Total energy = 4760.4043 kcal/mol (4757.7859 without restraints) Performing minimization step: 4985. Total energy = 4760.0384 kcal/mol (4757.4206 without restraints) Performing minimization step: 4986. Total energy = 4759.6730 kcal/mol (4757.0558 without restraints) Performing minimization step: 4987. Total energy = 4759.3079 kcal/mol (4756.6912 without restraints) Performing minimization step: 4988. Total energy = 4758.9435 kcal/mol (4756.3274 without restraints) Performing minimization step: 4989. Total energy = 4758.5792 kcal/mol (4755.9636 without restraints) Performing minimization step: 4990. Total energy = 4758.2154 kcal/mol (4755.6003 without restraints) Performing minimization step: 4991. Total energy = 4757.8520 kcal/mol (4755.2374 without restraints) Performing minimization step: 4992. Total energy = 4757.4890 kcal/mol (4754.8750 without restraints) Performing minimization step: 4993. Total energy = 4757.1265 kcal/mol (4754.5130 without restraints) Performing minimization step: 4994. Total energy = 4756.7647 kcal/mol (4754.1520 without restraints) Performing minimization step: 4995. Total energy = 4756.4033 kcal/mol (4753.7911 without restraints) Performing minimization step: 4996. Total energy = 4756.0421 kcal/mol (4753.4302 without restraints) Performing minimization step: 4997. Total energy = 4755.6815 kcal/mol (4753.0702 without restraints) Performing minimization step: 4998. Total energy = 4755.3212 kcal/mol (4752.7105 without restraints) Performing minimization step: 4999. Total energy = 4754.9614 kcal/mol (4752.3511 without restraints) Performing minimization step: 5000. Total energy = 4754.6021 kcal/mol (4751.9923 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/e034d33b/tmp/apt602_rank_1_refx/apt602_rank_1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to apt602_rank_1_refx.pdb DONE!