============================================================================= Reading config file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/configfile.txt ============================================================================= ----------------------------------------------------------------------------- Warning: Non-parallel version of QRNA cannot spawn threads. Warning: More threads than cores available. Parameters to be used: Number of minimization steps (NSTEPS): 5000 Golden section step sizes: maximal (MAXSTEP): 0.0001 minimal (MINSTEP): 1e-08 Verbosity (VERBOSE): 1 Write output every: 100 steps (WRITEFREQ) Record trajectory (TRAJECTORY): disabled Pedantic treatment of molecules (PEDANTICMOL): disabled Van der Waals cutoff radius (CUTOFF): 12 Born generalized solvent (USEBORN): disabled Constraints on secondary struct. (SSCONSTR): enabled Auto-detection of secondary struct. (SSDETECT): enabled Secondary structure (SECSTRUCT): none specified Hydrogen bonds (HBONDS): enabled Electrostatics (ELECTR): enabled van der Waals interactions (VANDERWAALS): enabled Anti-blow-up protection (BLOWGUARD): enabled Occupancy as positional restraint (POSRESTRAINTS): disabled Restraints description (RESTRFILE): none Number of parallel threads: 1 ----------------------------------------------------------------------------- Internal Warning: unknown atom type(s) in bond: C2 H5 Internal Warning: unknown atom type(s) in bond: C2 N* Internal Warning: unknown atom type(s) in bond: C2 NB Internal Warning: unknown atom type(s) in bond: C C1 Internal Warning: unknown atom type(s) in bond: CA C1 Internal Warning: unknown atom type(s) in bond: C1 C1 Internal Warning: unknown atom type(s) in bond: C1 CT Internal Warning: unknown atom type(s) in bond: C1 HA Internal Warning: unknown atom type(s) in bond: C1 H4 Internal Warning: unknown atom type(s) in bond: C1 N* Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in improper: C C1 N* CT Internal Warning: unknown atom(s) in improper: C C1 C1 CT Internal Warning: unknown atom(s) in improper: C1 N2 CA NC Initializing... Generic atom descriptions read: 47 Generic bond descriptions read: 199 Generic angle descriptions read: 567 Generic dihedral descriptions read: 812 Generic improper descriptions read: 116 Generic vdW descriptions read: 47 ----------------------------------------------------------------------------- ============================================================================= Reading PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1.pdb ============================================================================= Error: recognition of atom ATOM 19 'H5' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 20 'HO5 DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 24 1H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 25 2H2' DA A 1 ... failed. Atom erased. Error: recognition of atom ATOM 47 C5M DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 51 HN3 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 52 1HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 53 2HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 54 3HM5 DT A 2 ... failed. Atom erased. Error: recognition of atom ATOM 81 'H5' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 85 1H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 86 2H2' DA A 3 ... failed. Atom erased. Error: recognition of atom ATOM 114 'H5' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 118 1H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 119 2H2' DG A 4 ... failed. Atom erased. Error: recognition of atom ATOM 144 'H5' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 148 1H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 149 2H2' DC A 5 ... failed. Atom erased. Error: recognition of atom ATOM 176 'H5' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 180 1H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 181 2H2' DA A 6 ... failed. Atom erased. Error: recognition of atom ATOM 203 C5M DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 207 HN3 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 208 1HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 209 2HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 210 3HM5 DT A 7 ... failed. Atom erased. Error: recognition of atom ATOM 238 'H5' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 242 1H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 243 2H2' DG A 8 ... failed. Atom erased. Error: recognition of atom ATOM 270 'H5' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 274 1H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 275 2H2' DA A 9 ... failed. Atom erased. Error: recognition of atom ATOM 302 'H5' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 306 1H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 307 2H2' DA A 10 ... failed. Atom erased. Error: recognition of atom ATOM 329 C5M DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 333 HN3 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 334 1HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 335 2HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 336 3HM5 DT A 11 ... failed. Atom erased. Error: recognition of atom ATOM 358 C5M DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 362 HN3 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 363 1HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 364 2HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 365 3HM5 DT A 12 ... failed. Atom erased. Error: recognition of atom ATOM 390 'H5' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 394 1H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 395 2H2' DC A 13 ... failed. Atom erased. Error: recognition of atom ATOM 420 'H5' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 424 1H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 425 2H2' DC A 14 ... failed. Atom erased. Error: recognition of atom ATOM 450 'H5' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 454 1H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 455 2H2' DC A 15 ... failed. Atom erased. Error: recognition of atom ATOM 483 'H5' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 487 1H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 488 2H2' DG A 16 ... failed. Atom erased. Error: recognition of atom ATOM 515 'H5' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 519 1H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 520 2H2' DA A 17 ... failed. Atom erased. Error: recognition of atom ATOM 547 'H5' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 551 1H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 552 2H2' DA A 18 ... failed. Atom erased. Error: recognition of atom ATOM 580 'H5' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 584 1H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 585 2H2' DG A 19 ... failed. Atom erased. Error: recognition of atom ATOM 612 'H5' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 616 1H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 617 2H2' DA A 20 ... failed. Atom erased. Error: recognition of atom ATOM 642 'H5' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 646 1H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 647 2H2' DC A 21 ... failed. Atom erased. Error: recognition of atom ATOM 675 'H5' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 679 1H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 680 2H2' DG A 22 ... failed. Atom erased. Error: recognition of atom ATOM 705 'H5' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 709 1H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 710 2H2' DC A 23 ... failed. Atom erased. Error: recognition of atom ATOM 738 'H5' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 742 1H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 743 2H2' DG A 24 ... failed. Atom erased. Error: recognition of atom ATOM 771 'H5' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 775 1H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 776 2H2' DG A 25 ... failed. Atom erased. Error: recognition of atom ATOM 804 'H5' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 808 1H2' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 809 2H2' DG A 26 ... failed. Atom erased. Error: recognition of atom ATOM 834 'H5' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 838 1H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 839 2H2' DC A 27 ... failed. Atom erased. Error: recognition of atom ATOM 867 'H5' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 871 1H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 872 2H2' DG A 28 ... failed. Atom erased. Error: recognition of atom ATOM 894 C5M DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 898 HN3 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 899 1HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 900 2HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 901 3HM5 DT A 29 ... failed. Atom erased. Error: recognition of atom ATOM 926 'H5' DC A 30 ... failed. Atom erased. Error: recognition of atom ATOM 930 1H2' DC A 30 ... failed. Atom erased. Error: recognition of atom ATOM 931 2H2' DC A 30 ... failed. Atom erased. Error: recognition of atom ATOM 953 C5M DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 957 HN3 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 958 1HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 959 2HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 960 3HM5 DT A 31 ... failed. Atom erased. Error: recognition of atom ATOM 982 C5M DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 986 HN3 DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 987 1HM5 DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 988 2HM5 DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 989 3HM5 DT A 32 ... failed. Atom erased. Error: recognition of atom ATOM 1014 'H5' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1018 1H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1019 2H2' DC A 33 ... failed. Atom erased. Error: recognition of atom ATOM 1047 'H5' DG A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1051 1H2' DG A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1052 2H2' DG A 34 ... failed. Atom erased. Error: recognition of atom ATOM 1080 'H5' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1084 1H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1085 2H2' DG A 35 ... failed. Atom erased. Error: recognition of atom ATOM 1113 'H5' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1117 1H2' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1118 2H2' DG A 36 ... failed. Atom erased. Error: recognition of atom ATOM 1145 'H5' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1149 1H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1150 2H2' DA A 37 ... failed. Atom erased. Error: recognition of atom ATOM 1177 'H5' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1181 1H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1182 2H2' DA A 38 ... failed. Atom erased. Error: recognition of atom ATOM 1204 C5M DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1208 HN3 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1209 1HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1210 2HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1211 3HM5 DT A 39 ... failed. Atom erased. Error: recognition of atom ATOM 1233 C5M DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1237 HN3 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1238 1HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1239 2HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1240 3HM5 DT A 40 ... failed. Atom erased. Error: recognition of atom ATOM 1265 'H5' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1269 1H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1270 2H2' DC A 41 ... failed. Atom erased. Error: recognition of atom ATOM 1297 'H5' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1301 1H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1302 2H2' DA A 42 ... failed. Atom erased. Error: recognition of atom ATOM 1324 C5M DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1328 HN3 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1329 1HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1330 2HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1331 3HM5 DT A 43 ... failed. Atom erased. Error: recognition of atom ATOM 1359 'H5' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1363 1H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1364 2H2' DG A 44 ... failed. Atom erased. Error: recognition of atom ATOM 1389 'H5' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1393 1H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1394 2H2' DC A 45 ... failed. Atom erased. Error: recognition of atom ATOM 1416 C5M DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1420 HN3 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1421 1HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1422 2HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1423 3HM5 DT A 46 ... failed. Atom erased. Error: recognition of atom ATOM 1450 'H5' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1454 1H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1455 2H2' DA A 47 ... failed. Atom erased. Error: recognition of atom ATOM 1477 C5M DT A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1481 HN3 DT A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1482 1HM5 DT A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1483 2HM5 DT A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1484 3HM5 DT A 48 ... failed. Atom erased. Error: recognition of atom ATOM 1511 'H5' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1515 1H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1516 2H2' DA A 49 ... failed. Atom erased. Error: recognition of atom ATOM 1543 'H5' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1547 1H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1548 2H2' DA A 50 ... failed. Atom erased. Error: recognition of atom ATOM 1573 'H5' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1577 1H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1578 2H2' DC A 51 ... failed. Atom erased. Error: recognition of atom ATOM 1603 'H5' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1607 1H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1608 2H2' DC A 52 ... failed. Atom erased. Error: recognition of atom ATOM 1630 C5M DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1634 HN3 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1635 1HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1636 2HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1637 3HM5 DT A 53 ... failed. Atom erased. Error: recognition of atom ATOM 1665 'H5' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1669 1H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1670 2H2' DG A 54 ... failed. Atom erased. Error: recognition of atom ATOM 1698 'H5' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1702 1H2' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1703 2H2' DG A 55 ... failed. Atom erased. Error: recognition of atom ATOM 1725 C5M DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1729 HN3 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1730 1HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1731 2HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1732 3HM5 DT A 56 ... failed. Atom erased. Error: recognition of atom ATOM 1759 'H5' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1763 1H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1764 2H2' DA A 57 ... failed. Atom erased. Error: recognition of atom ATOM 1792 'H5' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1796 1H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1797 2H2' DG A 58 ... failed. Atom erased. Error: recognition of atom ATOM 1822 'H5' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1826 1H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1827 2H2' DC A 59 ... failed. Atom erased. Error: recognition of atom ATOM 1855 'H5' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1859 1H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1860 2H2' DG A 60 ... failed. Atom erased. Error: recognition of atom ATOM 1882 C5M DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1886 HN3 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1887 1HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1888 2HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1889 3HM5 DT A 61 ... failed. Atom erased. Error: recognition of atom ATOM 1914 'H5' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1918 1H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1919 2H2' DC A 62 ... failed. Atom erased. Error: recognition of atom ATOM 1947 'H5' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1951 1H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1952 2H2' DG A 63 ... failed. Atom erased. Error: recognition of atom ATOM 1979 'H5' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1983 1H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 1984 2H2' DA A 64 ... failed. Atom erased. Error: recognition of atom ATOM 2009 'H5' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2013 1H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2014 2H2' DC A 65 ... failed. Atom erased. Error: recognition of atom ATOM 2042 'H5' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2046 1H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2047 2H2' DG A 66 ... failed. Atom erased. Error: recognition of atom ATOM 2074 'H5' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2078 1H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2079 2H2' DA A 67 ... failed. Atom erased. Error: recognition of atom ATOM 2107 'H5' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2111 1H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2112 2H2' DG A 68 ... failed. Atom erased. Error: recognition of atom ATOM 2140 'H5' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2144 1H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2145 2H2' DG A 69 ... failed. Atom erased. Error: recognition of atom ATOM 2167 C5M DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2171 HN3 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2172 1HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2173 2HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2174 3HM5 DT A 70 ... failed. Atom erased. Error: recognition of atom ATOM 2199 'H5' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2203 1H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2204 2H2' DC A 71 ... failed. Atom erased. Error: recognition of atom ATOM 2226 C5M DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2230 HN3 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2231 1HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2232 2HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2233 3HM5 DT A 72 ... failed. Atom erased. Error: recognition of atom ATOM 2260 'H5' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2264 1H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2265 2H2' DA A 73 ... failed. Atom erased. Error: recognition of atom ATOM 2293 'H5' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2297 1H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2298 2H2' DG A 74 ... failed. Atom erased. Error: recognition of atom ATOM 2325 'H5' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2329 1H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2330 2H2' DA A 75 ... failed. Atom erased. Error: recognition of atom ATOM 2357 'H5' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2361 1H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2362 2H2' DA A 76 ... failed. Atom erased. Error: recognition of atom ATOM 2384 C5M DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2388 HN3 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2389 1HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2390 2HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2391 3HM5 DT A 77 ... failed. Atom erased. Error: recognition of atom ATOM 2418 'H5' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2422 1H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2423 2H2' DA A 78 ... failed. Atom erased. Error: recognition of atom ATOM 2448 'H5' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2452 1H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2453 2H2' DC A 79 ... failed. Atom erased. Error: recognition of atom ATOM 2478 'H5' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2482 1H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2483 2H2' DC A 80 ... failed. Atom erased. Error: recognition of atom ATOM 2510 'H5' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2514 1H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2515 2H2' DA A 81 ... failed. Atom erased. Error: recognition of atom ATOM 2543 'H5' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2544 'HO3 DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2548 1H2' DG A 82 ... failed. Atom erased. Error: recognition of atom ATOM 2549 2H2' DG A 82 ... failed. Atom erased. Missing atom added: HETATM 1 P DA A 1 1.197 0.565 -2.640 1.00 0.00 P Missing atom added: HETATM 24 H5'2 DA A 1 2.445 -0.548 -0.224 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 1 1.745 0.249 4.002 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 1 -0.207 -0.144 3.824 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 2 0.405 -4.029 4.179 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 2 -3.328 -2.401 6.327 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 2 -3.244 -3.853 7.317 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 2 -6.882 -0.959 4.714 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 2 -3.887 -1.946 1.318 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 2 -4.037 -1.027 0.756 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 2 -4.527 -2.730 0.916 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 2 -2.846 -2.253 1.245 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 3 -3.749 -7.536 7.475 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 3 -7.499 -6.492 9.407 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 3 -8.387 -6.768 7.637 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 4 -9.348 -10.469 7.944 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 4 -13.414 -8.965 7.330 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 4 -13.118 -9.274 5.377 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 5 -14.260 -12.981 4.916 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 5 -17.032 -11.344 2.034 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 5 -15.540 -11.537 0.717 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 6 -17.154 -14.833 -0.451 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 6 -18.342 -13.388 -4.356 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 6 -16.416 -13.726 -4.774 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 7 -17.458 -17.154 -5.796 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 7 -14.171 -14.844 -8.267 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 7 -14.636 -15.902 -9.594 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 7 -10.249 -13.773 -7.102 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 7 -12.315 -15.571 -3.398 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 7 -12.021 -14.770 -2.715 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 7 -11.593 -16.391 -3.315 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 7 -13.301 -15.940 -3.106 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 8 -14.412 -18.975 -11.199 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 8 -11.370 -16.929 -13.565 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 8 -10.016 -17.716 -12.323 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 9 -9.338 -21.005 -14.296 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 9 -5.367 -19.370 -14.680 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 9 -4.971 -20.230 -12.919 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 10 -3.733 -23.797 -14.194 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 10 -0.002 -22.474 -12.423 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 10 -0.719 -23.138 -10.679 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 11 0.909 -26.726 -11.635 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 11 1.470 -25.894 -7.086 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 11 2.664 -27.183 -7.173 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 11 -1.828 -25.131 -4.298 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 11 -3.608 -25.361 -8.513 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 11 -4.137 -24.409 -8.488 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 11 -4.288 -26.162 -8.218 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 11 -3.248 -25.549 -9.525 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 12 3.470 -30.333 -7.156 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 12 1.229 -29.219 -3.110 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 12 2.173 -30.528 -2.409 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 12 -2.890 -28.223 -2.534 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 12 -2.209 -28.987 -7.017 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 12 -2.732 -28.094 -7.372 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 12 -2.909 -29.831 -7.029 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 12 -1.386 -29.207 -7.704 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 13 2.444 -34.021 -1.828 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 13 0.130 -33.279 1.826 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 13 -1.494 -33.752 0.761 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 14 -1.385 -37.575 1.698 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 14 -5.271 -36.760 3.598 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 14 -6.023 -37.110 1.779 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 15 -6.541 -40.994 2.619 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 15 -10.788 -39.852 2.115 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 15 -10.462 -40.086 0.157 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 16 -11.536 -43.860 0.367 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 16 -14.968 -42.327 -1.818 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 16 -13.855 -42.582 -3.459 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 17 -15.056 -46.267 -4.139 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 17 -16.778 -44.492 -7.667 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 17 -15.006 -44.806 -8.539 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 18 -15.830 -48.312 -9.971 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 18 -15.300 -46.250 -13.722 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 18 -13.355 -46.684 -13.564 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 19 -13.550 -50.004 -15.495 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 19 -11.019 -47.829 -18.247 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 19 -9.468 -48.503 -17.180 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 20 -8.837 -51.713 -19.195 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 20 -5.093 -49.744 -20.083 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 20 -4.391 -50.598 -18.418 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 21 -3.039 -53.736 -20.254 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 21 0.842 -52.279 -18.722 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 21 0.394 -53.333 -17.083 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 22 1.893 -56.958 -18.124 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 22 4.490 -56.235 -14.723 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 22 3.016 -56.988 -13.602 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 23 4.353 -60.536 -13.546 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 23 4.462 -60.117 -9.189 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 23 2.607 -60.854 -9.298 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 24 1.001 -64.340 -10.676 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 24 -0.435 -65.766 -6.328 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 24 0.144 -63.975 -5.655 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 25 -1.083 -60.812 -5.688 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 25 -2.675 -61.850 -1.682 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 25 -1.428 -60.307 -1.435 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 26 -3.169 -57.199 -0.859 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 26 -0.630 -55.544 2.141 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 26 0.169 -54.627 0.554 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 27 -1.342 -52.660 -2.333 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 27 2.621 -53.310 -2.630 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 27 1.794 -52.746 -4.360 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 28 3.201 -48.501 -4.194 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 28 5.199 -48.972 -8.058 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 28 3.418 -48.659 -8.910 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 29 4.384 -45.066 -9.400 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 29 2.020 -46.620 -13.091 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 29 2.545 -45.103 -13.810 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 29 -2.063 -48.195 -12.626 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 29 -0.515 -47.215 -8.424 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 29 -0.894 -48.124 -7.956 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 29 -1.232 -46.405 -8.271 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 29 0.436 -46.943 -7.965 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 30 1.891 -41.552 -14.022 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 30 -0.920 -42.627 -17.162 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 30 -2.342 -42.526 -15.761 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 31 -2.752 -38.710 -17.074 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 31 -6.905 -40.852 -16.832 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 31 -7.496 -39.341 -17.511 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 31 -8.220 -42.742 -13.129 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 31 -3.896 -41.433 -12.561 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 31 -3.530 -42.369 -12.152 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 31 -4.160 -40.752 -11.755 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 31 -3.139 -40.982 -13.193 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 32 -8.234 -36.068 -17.373 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 32 -11.180 -38.446 -14.506 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 32 -12.351 -37.197 -14.911 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 32 -10.255 -40.598 -10.927 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 32 -6.448 -38.438 -12.304 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 32 -5.785 -39.305 -12.257 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 32 -6.379 -37.886 -11.362 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 32 -6.124 -37.787 -13.119 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 33 -13.627 -34.017 -14.212 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 33 -16.210 -36.044 -11.286 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 33 -14.824 -35.559 -9.929 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 34 -16.556 -32.206 -9.023 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 34 -17.302 -34.338 -5.312 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 34 -15.488 -33.712 -4.752 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 35 -16.722 -30.395 -3.086 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 35 -15.296 -32.239 0.506 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 35 -13.511 -31.450 0.073 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 36 -13.960 -28.209 2.041 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 36 -10.767 -29.839 4.431 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 36 -9.521 -28.951 3.145 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 37 -9.211 -25.628 5.090 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 37 -5.096 -26.891 5.471 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 37 -4.789 -25.986 3.714 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 38 -3.899 -22.320 5.056 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 38 -0.053 -23.277 3.287 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 38 -0.821 -22.670 1.544 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 39 0.462 -18.948 2.561 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 39 1.175 -19.728 -1.983 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 39 2.243 -18.333 -1.880 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 39 -2.016 -20.766 -4.820 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 39 -3.863 -20.641 -0.626 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 39 -4.328 -21.626 -0.652 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 39 -4.592 -19.888 -0.932 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 39 -3.528 -20.426 0.388 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 40 2.726 -15.099 -1.884 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 40 0.619 -16.367 -5.962 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 40 1.436 -14.963 -6.638 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 40 -3.309 -17.897 -6.573 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 40 -2.846 -16.901 -2.115 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 40 -3.265 -17.835 -1.730 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 40 -3.643 -16.150 -2.161 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 40 -2.076 -16.550 -1.423 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 41 1.312 -11.505 -7.196 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 41 -1.105 -12.345 -10.720 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 41 -2.684 -11.884 -9.584 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 42 -2.665 -8.075 -10.597 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 42 -6.323 -9.214 -12.698 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 42 -7.221 -8.987 -10.926 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 43 -7.759 -5.192 -11.836 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 43 -11.243 -7.289 -9.490 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 43 -12.235 -5.959 -10.074 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 43 -11.121 -9.103 -5.624 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 43 -6.886 -7.578 -6.596 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 43 -6.369 -8.501 -6.326 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 43 -6.867 -6.895 -5.742 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 43 -6.366 -7.111 -7.435 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 44 -13.366 -2.701 -9.613 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 44 -16.630 -4.610 -7.446 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 44 -15.612 -4.249 -5.764 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 45 -16.774 -0.510 -4.790 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 45 -18.030 -2.516 -1.168 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 45 -16.150 -2.285 -0.528 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 46 -17.734 1.082 1.062 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 46 -15.019 -0.877 4.259 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 46 -15.716 0.365 5.293 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 46 -10.884 -2.126 3.315 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 46 -12.537 -0.269 -0.487 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 46 -12.345 -1.105 -1.151 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 46 -11.707 0.431 -0.517 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 46 -13.456 0.231 -0.775 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 47 -15.596 3.457 6.768 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 47 -12.486 1.417 9.474 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 47 -11.119 1.981 8.128 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 48 -10.894 5.764 10.279 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 48 -6.930 4.703 8.370 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 48 -6.166 5.726 9.581 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 48 -5.307 4.235 4.608 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 48 -9.881 4.762 4.212 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 48 -10.063 3.831 3.676 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 48 -9.777 5.579 3.495 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 48 -10.723 4.970 4.872 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 49 -5.570 9.267 10.794 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 49 -4.588 9.397 6.527 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 49 -5.237 11.180 7.155 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 50 -1.428 13.212 10.507 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 50 -2.313 17.424 10.214 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 50 -3.796 17.038 11.498 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 51 1.086 15.210 14.171 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 51 4.724 18.042 13.350 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 51 3.597 19.560 14.001 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 52 5.425 18.302 18.167 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 52 3.878 19.111 22.274 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 52 1.943 18.632 22.115 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 53 3.586 15.895 24.678 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 53 0.640 18.662 27.014 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 53 1.061 17.633 28.378 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 53 -3.213 19.903 25.082 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 53 -0.991 17.047 22.254 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 53 -0.989 17.677 21.367 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 53 -1.848 16.373 22.221 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 53 -0.072 16.462 22.287 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 54 0.319 14.826 30.276 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 54 -3.330 17.042 31.743 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 54 -4.407 16.146 30.317 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 55 -5.664 12.987 29.918 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 55 -9.045 16.255 31.207 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 55 -9.790 15.350 29.587 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 56 -11.238 12.276 32.266 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 56 -11.841 12.990 27.300 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 56 -13.580 13.220 27.436 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 56 -10.122 11.104 23.828 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 56 -7.438 10.176 27.418 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 56 -6.496 10.493 26.965 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 56 -7.563 9.099 27.262 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 56 -7.399 10.374 28.492 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 57 -14.876 11.696 26.959 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 57 -17.344 7.914 24.627 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 57 -15.744 6.715 24.649 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 58 -16.121 6.245 30.277 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 58 -11.611 6.022 29.144 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 58 -12.261 7.912 29.126 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 59 -9.193 8.287 32.566 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 59 -8.341 3.121 33.098 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 59 -9.093 2.991 31.250 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 60 -8.752 3.019 29.523 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 60 -9.555 1.294 25.440 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 60 -7.834 0.293 25.625 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 61 -7.622 -2.774 27.642 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 61 -6.010 -3.794 24.820 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 61 -6.545 -5.466 24.716 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 61 -2.191 -2.206 25.805 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 61 -4.719 -0.473 29.132 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 61 -4.309 0.534 29.064 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 61 -4.179 -1.035 29.895 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 61 -5.772 -0.418 29.401 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 62 -6.093 -8.659 26.558 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 62 -1.583 -8.553 25.475 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 62 -1.274 -7.821 27.309 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 63 -2.942 -10.436 31.130 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 63 1.149 -9.268 31.331 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 63 0.688 -10.633 32.717 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 64 -0.061 -12.961 33.356 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 64 1.677 -13.922 37.115 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 64 3.464 -13.567 36.292 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 65 -0.443 -9.027 38.205 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 65 0.445 -8.589 42.771 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 65 2.071 -7.492 42.386 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 66 -0.612 -4.967 38.489 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 66 1.213 -4.204 37.068 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 66 0.625 -5.954 36.301 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 67 -0.808 -0.244 34.961 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 67 2.551 -2.192 33.379 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 67 0.842 -2.546 32.403 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 68 0.506 3.228 33.305 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 68 -0.858 5.181 35.757 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 68 0.828 6.167 35.329 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 69 -1.113 6.321 29.043 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 69 2.540 8.088 27.064 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 69 3.417 9.150 28.513 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 70 4.248 3.961 26.988 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 70 7.869 6.255 29.527 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 70 9.218 5.507 28.680 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 70 8.649 8.806 32.735 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 70 4.640 6.647 33.392 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 70 4.028 7.529 33.608 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 70 4.998 6.227 34.339 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 70 4.014 5.900 32.893 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 71 10.248 1.212 26.111 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 71 10.472 -3.392 25.211 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 71 8.475 -3.386 25.134 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 72 9.745 -1.989 20.796 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 72 5.968 -4.628 21.042 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 72 6.246 -5.031 19.352 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 72 2.252 -4.769 22.728 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 72 4.679 -1.688 25.112 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 72 4.690 -2.193 26.083 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 72 3.836 -0.986 25.092 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 72 5.607 -1.117 25.004 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 73 4.483 -2.371 17.849 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 73 1.514 -5.360 16.261 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 73 0.391 -3.998 17.198 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 74 0.288 -3.361 12.464 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 74 -3.828 -5.557 13.260 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 74 -4.524 -3.867 14.070 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 75 -6.511 -1.893 11.505 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 75 -9.501 -0.325 14.306 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 75 -8.220 1.201 14.471 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 76 -5.356 2.463 11.454 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 76 -4.611 4.466 15.714 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 76 -2.994 4.957 14.646 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DT A 77 -7.632 7.277 13.456 1.00 0.00 H Missing atom added: HETATM 25 H2' DT A 77 -10.009 6.938 15.652 1.00 0.00 H Missing atom added: HETATM 26 H2'2 DT A 77 -11.172 7.903 14.751 1.00 0.00 H Missing atom added: HETATM 28 H3 DT A 77 -10.072 7.742 19.726 1.00 0.00 H Missing atom added: HETATM 19 C7 DT A 77 -5.630 7.451 18.493 1.00 0.00 C Missing atom added: HETATM 30 H72 DT A 77 -5.314 6.805 19.308 1.00 0.00 H Missing atom added: HETATM 29 H71 DT A 77 -5.448 8.492 18.757 1.00 0.00 H Missing atom added: HETATM 31 H73 DT A 77 -5.076 7.202 17.591 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 78 -12.325 11.663 14.141 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 78 -15.355 12.121 16.964 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 78 -13.826 12.706 18.111 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 79 -14.373 16.464 17.180 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 79 -15.444 16.775 21.333 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 79 -13.478 16.896 21.676 1.00 0.00 H Missing atom added: HETATM 22 H5'2 DC A 80 -14.096 20.734 21.882 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DC A 80 -13.134 21.427 25.851 1.00 0.00 H Missing atom added: HETATM 25 H2' DC A 80 -11.275 21.608 25.139 1.00 0.00 H Missing atom added: HETATM 24 H5'2 DA A 81 -11.647 25.627 24.394 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DA A 81 -8.573 25.722 27.568 1.00 0.00 H Missing atom added: HETATM 27 H2' DA A 81 -7.262 25.354 26.104 1.00 0.00 H Missing atom added: HETATM 25 H5'2 DG A 82 -5.730 27.798 24.475 1.00 0.00 H Missing atom added: HETATM 11 H2'2 DG A 82 -2.689 27.434 26.802 1.00 0.00 H Missing atom added: HETATM 28 H2' DG A 82 -2.116 26.768 25.006 1.00 0.00 H Number of atoms: 2607 Number of residues: 82 Building intraresidual bonds... Warning: Bond expected, but some of the atoms are missing: P OP2, residue No. A 1 Warning: Bond expected, but some of the atoms are missing: P OP1, residue No. A 1 Building intraresidual angles... Warning: Angle expected, but some of the atoms are missing: OP2 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P O5', residue No. A 1 Warning: Angle expected, but some of the atoms are missing: OP1 P OP2, residue No. A 1 Building intraresidual dihedrals... Warning: Dihedral expected, but some of the atoms are missing: OP2 P O5' C5', residue No. A 1 Warning: Dihedral expected, but some of the atoms are missing: OP1 P O5' C5', residue No. A 1 Building intraresidual impropers... Building interresidual bonds... Building interresidual angles... Internal Warning: unknown atoms in angle: H5 C2 N* Internal Warning: unknown atoms in angle: H5 C2 NB Internal Warning: unknown atoms in angle: N* C2 NB Internal Warning: unknown atoms in angle: CB N* C2 Internal Warning: unknown atoms in angle: C2 N* CT Internal Warning: unknown atoms in angle: CB NB C2 Internal Warning: unknown atoms in angle: C1 C NA Internal Warning: unknown atoms in angle: C1 C O Internal Warning: unknown atoms in angle: C1 CA N2 Internal Warning: unknown atoms in angle: C1 CA NC Internal Warning: unknown atoms in angle: C C1 C1 Internal Warning: unknown atoms in angle: C C1 CT Internal Warning: unknown atoms in angle: C C1 HA Internal Warning: unknown atoms in angle: C C1 H4 Internal Warning: unknown atoms in angle: CA C1 C1 Internal Warning: unknown atoms in angle: CA C1 HA Internal Warning: unknown atoms in angle: CA C1 H4 Internal Warning: unknown atoms in angle: C1 C1 CT Internal Warning: unknown atoms in angle: C1 C1 HA Internal Warning: unknown atoms in angle: C1 C1 H4 Internal Warning: unknown atoms in angle: C1 C1 N* Internal Warning: unknown atoms in angle: H4 C1 N* Internal Warning: unknown atoms in angle: H1 CT C1 Internal Warning: unknown atoms in angle: HC CT C1 Internal Warning: unknown atoms in angle: C N* C1 Internal Warning: unknown atoms in angle: C1 N* CT Building interresidual dihedrals... Internal Warning: unknown atom(s) in dihedral: X C2 N* X Internal Warning: unknown atom(s) in dihedral: X C2 NB X Internal Warning: unknown atom(s) in dihedral: X C C1 X Internal Warning: unknown atom(s) in dihedral: X CA C1 X Internal Warning: unknown atom(s) in dihedral: X C1 C1 X Internal Warning: unknown atom(s) in dihedral: X C1 CT X Internal Warning: unknown atom(s) in dihedral: X C1 N* X Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: HC CT C1 C1 Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: C1 C1 C O Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C2 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Internal Warning: unknown atom(s) in dihedral: OS CT N* C1 Number of bonds built: 2815 Number of angles built: 5110 Number of dihedrals built: 7639 Number of impropers built: 560 ----------------------------------------------------------------------------- End of molecule (chain) ----------------------------------------------------------------------------- ----------------------------------------------------------------------------- Building interresidual nonbonded pairs & H-bonds (it may take a while)... Number of electrostatic pairs: 3388996 Number of van der Waals pairs: 315757 Number of H-bonds built: 66 Number of spring restraints: 0 Number of positional restraints: 0 Number of base pairs built: 18 Number of molecules (chains) read: 1 ----------------------------------------------------------------------------- Performing minimization step: 1. Total energy = 225888.1295 kcal/mol (225108.8241 without restraints) Performing minimization step: 2. Total energy = 219610.4513 kcal/mol (218872.4958 without restraints) Performing minimization step: 3. Total energy = 213668.1008 kcal/mol (212967.9981 without restraints) Performing minimization step: 4. Total energy = 208033.1495 kcal/mol (207367.7976 without restraints) Performing minimization step: 5. Total energy = 202680.7920 kcal/mol (202047.4320 without restraints) Performing minimization step: 6. Total energy = 197588.9361 kcal/mol (196985.1073 without restraints) Performing minimization step: 7. Total energy = 192737.8505 kcal/mol (192161.3519 without restraints) Performing minimization step: 8. Total energy = 188109.8618 kcal/mol (187558.7194 without restraints) Performing minimization step: 9. Total energy = 183689.0952 kcal/mol (183161.5330 without restraints) Performing minimization step: 10. Total energy = 179461.2503 kcal/mol (178955.6661 without restraints) Performing minimization step: 11. Total energy = 175413.4089 kcal/mol (174928.3534 without restraints) Performing minimization step: 12. Total energy = 171533.8694 kcal/mol (171068.0279 without restraints) Performing minimization step: 13. Total energy = 167812.0033 kcal/mol (167364.1802 without restraints) Performing minimization step: 14. Total energy = 164238.1319 kcal/mol (163807.2367 without restraints) Performing minimization step: 15. Total energy = 160803.4182 kcal/mol (160388.4542 without restraints) Performing minimization step: 16. Total energy = 157499.7736 kcal/mol (157099.8273 without restraints) Performing minimization step: 17. Total energy = 154319.7771 kcal/mol (153934.0093 without restraints) Performing minimization step: 18. Total energy = 151256.6034 kcal/mol (150884.2415 without restraints) Performing minimization step: 19. Total energy = 148303.9613 kcal/mol (147944.2920 without restraints) Performing minimization step: 20. Total energy = 145456.0390 kcal/mol (145108.4030 without restraints) Performing minimization step: 21. Total energy = 142707.4559 kcal/mol (142371.2421 without restraints) Performing minimization step: 22. Total energy = 140053.2199 kcal/mol (139727.8605 without restraints) Performing minimization step: 23. Total energy = 137488.6911 kcal/mol (137173.6580 without restraints) Performing minimization step: 24. Total energy = 135009.5480 kcal/mol (134704.3489 without restraints) Performing minimization step: 25. Total energy = 132611.7584 kcal/mol (132315.9335 without restraints) Performing minimization step: 26. Total energy = 130291.5534 kcal/mol (130004.6726 without restraints) Performing minimization step: 27. Total energy = 128045.4043 kcal/mol (127767.0644 without restraints) Performing minimization step: 28. Total energy = 125870.0017 kcal/mol (125599.8244 without restraints) Performing minimization step: 29. Total energy = 123762.2373 kcal/mol (123499.8670 without restraints) Performing minimization step: 30. Total energy = 121719.1873 kcal/mol (121464.2893 without restraints) Performing minimization step: 31. Total energy = 119738.0978 kcal/mol (119490.3565 without restraints) Performing minimization step: 32. Total energy = 117816.3714 kcal/mol (117575.4891 without restraints) Performing minimization step: 33. Total energy = 115951.5550 kcal/mol (115717.2501 without restraints) Performing minimization step: 34. Total energy = 114141.3290 kcal/mol (113913.3354 without restraints) Performing minimization step: 35. Total energy = 112383.4984 kcal/mol (112161.5639 without restraints) Performing minimization step: 36. Total energy = 110675.9827 kcal/mol (110459.8683 without restraints) Performing minimization step: 37. Total energy = 109016.8089 kcal/mol (108806.2878 without restraints) Performing minimization step: 38. Total energy = 107404.1041 kcal/mol (107198.9609 without restraints) Performing minimization step: 39. Total energy = 105836.0885 kcal/mol (105636.1183 without restraints) Performing minimization step: 40. Total energy = 104311.0694 kcal/mol (104116.0775 without restraints) Performing minimization step: 41. Total energy = 102827.4366 kcal/mol (102637.2374 without restraints) Performing minimization step: 42. Total energy = 101383.6550 kcal/mol (101198.0717 without restraints) Performing minimization step: 43. Total energy = 99978.2630 kcal/mol (99797.1273 without restraints) Performing minimization step: 44. Total energy = 98609.8662 kcal/mol (98433.0174 without restraints) Performing minimization step: 45. Total energy = 97277.1343 kcal/mol (97104.4189 without restraints) Performing minimization step: 46. Total energy = 95978.7967 kcal/mol (95810.0681 without restraints) Performing minimization step: 47. Total energy = 94713.6406 kcal/mol (94548.7589 without restraints) Performing minimization step: 48. Total energy = 93480.5058 kcal/mol (93319.3373 without restraints) Performing minimization step: 49. Total energy = 92278.2838 kcal/mol (92120.7003 without restraints) Performing minimization step: 50. Total energy = 91105.9139 kcal/mol (90951.7932 without restraints) Performing minimization step: 51. Total energy = 89962.3811 kcal/mol (89811.6058 without restraints) Performing minimization step: 52. Total energy = 88846.7133 kcal/mol (88699.1713 without restraints) Performing minimization step: 53. Total energy = 87757.9800 kcal/mol (87613.5638 without restraints) Performing minimization step: 54. Total energy = 86695.2897 kcal/mol (86553.8962 without restraints) Performing minimization step: 55. Total energy = 85657.7873 kcal/mol (85519.3177 without restraints) Performing minimization step: 56. Total energy = 84644.6536 kcal/mol (84509.0133 without restraints) Performing minimization step: 57. Total energy = 83655.1030 kcal/mol (83522.2011 without restraints) Performing minimization step: 58. Total energy = 82688.3815 kcal/mol (82558.1309 without restraints) Performing minimization step: 59. Total energy = 81743.7654 kcal/mol (81616.0825 without restraints) Performing minimization step: 60. Total energy = 80820.5610 kcal/mol (80695.3654 without restraints) Performing minimization step: 61. Total energy = 79918.1011 kcal/mol (79795.3157 without restraints) Performing minimization step: 62. Total energy = 79035.7453 kcal/mol (78915.2961 without restraints) Performing minimization step: 63. Total energy = 78172.8781 kcal/mol (78054.6939 without restraints) Performing minimization step: 64. Total energy = 77328.9087 kcal/mol (77212.9210 without restraints) Performing minimization step: 65. Total energy = 76503.2685 kcal/mol (76389.4116 without restraints) Performing minimization step: 66. Total energy = 75695.4109 kcal/mol (75583.6215 without restraints) Performing minimization step: 67. Total energy = 74904.8102 kcal/mol (74795.0275 without restraints) Performing minimization step: 68. Total energy = 74130.9608 kcal/mol (74023.1261 without restraints) Performing minimization step: 69. Total energy = 73373.3759 kcal/mol (73267.4331 without restraints) Performing minimization step: 70. Total energy = 72631.5871 kcal/mol (72527.4817 without restraints) Performing minimization step: 71. Total energy = 71905.1434 kcal/mol (71802.8233 without restraints) Performing minimization step: 72. Total energy = 71193.6101 kcal/mol (71093.0250 without restraints) Performing minimization step: 73. Total energy = 70496.5688 kcal/mol (70397.6701 without restraints) Performing minimization step: 74. Total energy = 69813.6164 kcal/mol (69716.3575 without restraints) Performing minimization step: 75. Total energy = 69144.3636 kcal/mol (69048.6994 without restraints) Performing minimization step: 76. Total energy = 68488.4359 kcal/mol (68394.3229 without restraints) Performing minimization step: 77. Total energy = 67845.4716 kcal/mol (67752.8680 without restraints) Performing minimization step: 78. Total energy = 67215.1222 kcal/mol (67123.9874 without restraints) Performing minimization step: 79. Total energy = 66597.0509 kcal/mol (66507.3460 without restraints) Performing minimization step: 80. Total energy = 65990.9325 kcal/mol (65902.6198 without restraints) Performing minimization step: 81. Total energy = 65396.4544 kcal/mol (65309.4977 without restraints) Performing minimization step: 82. Total energy = 64813.3128 kcal/mol (64727.6766 without restraints) Performing minimization step: 83. Total energy = 64241.2151 kcal/mol (64156.8656 without restraints) Performing minimization step: 84. Total energy = 63679.8785 kcal/mol (63596.7830 without restraints) Performing minimization step: 85. Total energy = 63129.0298 kcal/mol (63047.1565 without restraints) Performing minimization step: 86. Total energy = 62588.4046 kcal/mol (62507.7228 without restraints) Performing minimization step: 87. Total energy = 62057.7473 kcal/mol (61978.2273 without restraints) Performing minimization step: 88. Total energy = 61536.8106 kcal/mol (61458.4238 without restraints) Performing minimization step: 89. Total energy = 61025.3552 kcal/mol (60948.0737 without restraints) Performing minimization step: 90. Total energy = 60523.1496 kcal/mol (60446.9465 without restraints) Performing minimization step: 91. Total energy = 60029.9693 kcal/mol (59954.8186 without restraints) Performing minimization step: 92. Total energy = 59545.5971 kcal/mol (59471.4735 without restraints) Performing minimization step: 93. Total energy = 59069.8228 kcal/mol (58996.7022 without restraints) Performing minimization step: 94. Total energy = 58602.4428 kcal/mol (58530.3013 without restraints) Performing minimization step: 95. Total energy = 58143.2592 kcal/mol (58072.0737 without restraints) Performing minimization step: 96. Total energy = 57692.0803 kcal/mol (57621.8286 without restraints) Performing minimization step: 97. Total energy = 57248.7204 kcal/mol (57179.3810 without restraints) Performing minimization step: 98. Total energy = 56812.9992 kcal/mol (56744.5510 without restraints) Performing minimization step: 99. Total energy = 56384.7418 kcal/mol (56317.1646 without restraints) Performing minimization step: 100. Total energy = 55963.7784 kcal/mol (55897.0525 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 101. Total energy = 55549.9450 kcal/mol (55484.0511 without restraints) Performing minimization step: 102. Total energy = 55143.0813 kcal/mol (55078.0009 without restraints) Performing minimization step: 103. Total energy = 54743.0317 kcal/mol (54678.7467 without restraints) Performing minimization step: 104. Total energy = 54349.6457 kcal/mol (54286.1386 without restraints) Performing minimization step: 105. Total energy = 53962.7765 kcal/mol (53900.0303 without restraints) Performing minimization step: 106. Total energy = 53582.2820 kcal/mol (53520.2800 without restraints) Performing minimization step: 107. Total energy = 53208.0228 kcal/mol (53146.7489 without restraints) Performing minimization step: 108. Total energy = 52839.8650 kcal/mol (52779.3035 without restraints) Performing minimization step: 109. Total energy = 52477.6776 kcal/mol (52417.8133 without restraints) Performing minimization step: 110. Total energy = 52121.3326 kcal/mol (52062.1507 without restraints) Performing minimization step: 111. Total energy = 51770.7062 kcal/mol (51712.1922 without restraints) Performing minimization step: 112. Total energy = 51425.6778 kcal/mol (51367.8177 without restraints) Performing minimization step: 113. Total energy = 51086.1303 kcal/mol (51028.9104 without restraints) Performing minimization step: 114. Total energy = 50751.9491 kcal/mol (50695.3560 without restraints) Performing minimization step: 115. Total energy = 50423.0228 kcal/mol (50367.0436 without restraints) Performing minimization step: 116. Total energy = 50099.2430 kcal/mol (50043.8650 without restraints) Performing minimization step: 117. Total energy = 49780.5038 kcal/mol (49725.7149 without restraints) Performing minimization step: 118. Total energy = 49466.7024 kcal/mol (49412.4905 without restraints) Performing minimization step: 119. Total energy = 49157.7389 kcal/mol (49104.0923 without restraints) Performing minimization step: 120. Total energy = 48853.5149 kcal/mol (48800.4222 without restraints) Performing minimization step: 121. Total energy = 48553.9352 kcal/mol (48501.3854 without restraints) Performing minimization step: 122. Total energy = 48258.9070 kcal/mol (48206.8891 without restraints) Performing minimization step: 123. Total energy = 47968.3395 kcal/mol (47916.8430 without restraints) Performing minimization step: 124. Total energy = 47682.1443 kcal/mol (47631.1588 without restraints) Performing minimization step: 125. Total energy = 47400.2350 kcal/mol (47349.7506 without restraints) Performing minimization step: 126. Total energy = 47122.5277 kcal/mol (47072.5344 without restraints) Performing minimization step: 127. Total energy = 46848.9397 kcal/mol (46799.4281 without restraints) Performing minimization step: 128. Total energy = 46579.3914 kcal/mol (46530.3521 without restraints) Performing minimization step: 129. Total energy = 46313.8043 kcal/mol (46265.2281 without restraints) Performing minimization step: 130. Total energy = 46052.1021 kcal/mol (46003.9802 without restraints) Performing minimization step: 131. Total energy = 45794.2096 kcal/mol (45746.5331 without restraints) Performing minimization step: 132. Total energy = 45540.0544 kcal/mol (45492.8150 without restraints) Performing minimization step: 133. Total energy = 45289.5652 kcal/mol (45242.7545 without restraints) Performing minimization step: 134. Total energy = 45042.6724 kcal/mol (44996.2824 without restraints) Performing minimization step: 135. Total energy = 44799.3080 kcal/mol (44753.3307 without restraints) Performing minimization step: 136. Total energy = 44559.4056 kcal/mol (44513.8333 without restraints) Performing minimization step: 137. Total energy = 44322.9003 kcal/mol (44277.7253 without restraints) Performing minimization step: 138. Total energy = 44089.7287 kcal/mol (44044.9436 without restraints) Performing minimization step: 139. Total energy = 43859.8286 kcal/mol (43815.4263 without restraints) Performing minimization step: 140. Total energy = 43633.1395 kcal/mol (43589.1128 without restraints) Performing minimization step: 141. Total energy = 43409.6021 kcal/mol (43365.9441 without restraints) Performing minimization step: 142. Total energy = 43189.1584 kcal/mol (43145.8624 without restraints) Performing minimization step: 143. Total energy = 42971.7515 kcal/mol (42928.8108 without restraints) Performing minimization step: 144. Total energy = 42757.3259 kcal/mol (42714.7341 without restraints) Performing minimization step: 145. Total energy = 42545.8275 kcal/mol (42503.5783 without restraints) Performing minimization step: 146. Total energy = 42337.2028 kcal/mol (42295.2899 without restraints) Performing minimization step: 147. Total energy = 42131.4008 kcal/mol (42089.8181 without restraints) Performing minimization step: 148. Total energy = 41928.3698 kcal/mol (41887.1115 without restraints) Performing minimization step: 149. Total energy = 41728.0604 kcal/mol (41687.1206 without restraints) Performing minimization step: 150. Total energy = 41530.4237 kcal/mol (41489.7968 without restraints) Performing minimization step: 151. Total energy = 41335.4122 kcal/mol (41295.0925 without restraints) Performing minimization step: 152. Total energy = 41142.9789 kcal/mol (41102.9611 without restraints) Performing minimization step: 153. Total energy = 40953.0784 kcal/mol (40913.3571 without restraints) Performing minimization step: 154. Total energy = 40765.6659 kcal/mol (40726.2359 without restraints) Performing minimization step: 155. Total energy = 40580.6975 kcal/mol (40541.5536 without restraints) Performing minimization step: 156. Total energy = 40398.1301 kcal/mol (40359.2674 without restraints) Performing minimization step: 157. Total energy = 40217.9221 kcal/mol (40179.3357 without restraints) Performing minimization step: 158. Total energy = 40040.0322 kcal/mol (40001.7171 without restraints) Performing minimization step: 159. Total energy = 39864.4199 kcal/mol (39826.3716 without restraints) Performing minimization step: 160. Total energy = 39691.0457 kcal/mol (39653.2594 without restraints) Performing minimization step: 161. Total energy = 39519.8712 kcal/mol (39482.3425 without restraints) Performing minimization step: 162. Total energy = 39350.8580 kcal/mol (39313.5826 without restraints) Performing minimization step: 163. Total energy = 39183.9693 kcal/mol (39146.9427 without restraints) Performing minimization step: 164. Total energy = 39019.1685 kcal/mol (38982.3865 without restraints) Performing minimization step: 165. Total energy = 38856.4200 kcal/mol (38819.8784 without restraints) Performing minimization step: 166. Total energy = 38695.6889 kcal/mol (38659.3836 without restraints) Performing minimization step: 167. Total energy = 38536.9407 kcal/mol (38500.8678 without restraints) Performing minimization step: 168. Total energy = 38380.1418 kcal/mol (38344.2972 without restraints) Performing minimization step: 169. Total energy = 38225.2588 kcal/mol (38189.6387 without restraints) Performing minimization step: 170. Total energy = 38072.2600 kcal/mol (38036.8606 without restraints) Performing minimization step: 171. Total energy = 37921.1138 kcal/mol (37885.9315 without restraints) Performing minimization step: 172. Total energy = 37771.7889 kcal/mol (37736.8200 without restraints) Performing minimization step: 173. Total energy = 37624.2547 kcal/mol (37589.4956 without restraints) Performing minimization step: 174. Total energy = 37478.4814 kcal/mol (37443.9289 without restraints) Performing minimization step: 175. Total energy = 37334.4395 kcal/mol (37300.0899 without restraints) Performing minimization step: 176. Total energy = 37192.1007 kcal/mol (37157.9507 without restraints) Performing minimization step: 177. Total energy = 37051.4365 kcal/mol (37017.4828 without restraints) Performing minimization step: 178. Total energy = 36912.4197 kcal/mol (36878.6591 without restraints) Performing minimization step: 179. Total energy = 36775.0228 kcal/mol (36741.4521 without restraints) Performing minimization step: 180. Total energy = 36639.2193 kcal/mol (36605.8354 without restraints) Performing minimization step: 181. Total energy = 36504.9828 kcal/mol (36471.7827 without restraints) Performing minimization step: 182. Total energy = 36372.2881 kcal/mol (36339.2688 without restraints) Performing minimization step: 183. Total energy = 36241.1101 kcal/mol (36208.2686 without restraints) Performing minimization step: 184. Total energy = 36111.4236 kcal/mol (36078.7570 without restraints) Performing minimization step: 185. Total energy = 35983.2047 kcal/mol (35950.7103 without restraints) Performing minimization step: 186. Total energy = 35856.4297 kcal/mol (35824.1046 without restraints) Performing minimization step: 187. Total energy = 35731.0752 kcal/mol (35698.9167 without restraints) Performing minimization step: 188. Total energy = 35607.1181 kcal/mol (35575.1234 without restraints) Performing minimization step: 189. Total energy = 35484.5362 kcal/mol (35452.7031 without restraints) Performing minimization step: 190. Total energy = 35363.3079 kcal/mol (35331.6336 without restraints) Performing minimization step: 191. Total energy = 35243.4109 kcal/mol (35211.8928 without restraints) Performing minimization step: 192. Total energy = 35124.8241 kcal/mol (35093.4597 without restraints) Performing minimization step: 193. Total energy = 35007.5267 kcal/mol (34976.3137 without restraints) Performing minimization step: 194. Total energy = 34891.4984 kcal/mol (34860.4343 without restraints) Performing minimization step: 195. Total energy = 34776.7187 kcal/mol (34745.8011 without restraints) Performing minimization step: 196. Total energy = 34663.1684 kcal/mol (34632.3951 without restraints) Performing minimization step: 197. Total energy = 34550.8274 kcal/mol (34520.1962 without restraints) Performing minimization step: 198. Total energy = 34439.6772 kcal/mol (34409.1858 without restraints) Performing minimization step: 199. Total energy = 34329.6993 kcal/mol (34299.3454 without restraints) Performing minimization step: 200. Total energy = 34220.8746 kcal/mol (34190.6563 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 201. Total energy = 34113.1856 kcal/mol (34083.1005 without restraints) Performing minimization step: 202. Total energy = 34006.6144 kcal/mol (33976.6607 without restraints) Performing minimization step: 203. Total energy = 33901.1432 kcal/mol (33871.3186 without restraints) Performing minimization step: 204. Total energy = 33796.7557 kcal/mol (33767.0585 without restraints) Performing minimization step: 205. Total energy = 33693.4348 kcal/mol (33663.8629 without restraints) Performing minimization step: 206. Total energy = 33591.1645 kcal/mol (33561.7160 without restraints) Performing minimization step: 207. Total energy = 33489.9278 kcal/mol (33460.6008 without restraints) Performing minimization step: 208. Total energy = 33389.7088 kcal/mol (33360.5014 without restraints) Performing minimization step: 209. Total energy = 33290.4928 kcal/mol (33261.4033 without restraints) Performing minimization step: 210. Total energy = 33192.2631 kcal/mol (33163.2895 without restraints) Performing minimization step: 211. Total energy = 33095.0058 kcal/mol (33066.1465 without restraints) Performing minimization step: 212. Total energy = 32998.7057 kcal/mol (32969.9589 without restraints) Performing minimization step: 213. Total energy = 32903.3481 kcal/mol (32874.7120 without restraints) Performing minimization step: 214. Total energy = 32808.9188 kcal/mol (32780.3920 without restraints) Performing minimization step: 215. Total energy = 32715.4039 kcal/mol (32686.9846 without restraints) Performing minimization step: 216. Total energy = 32622.7894 kcal/mol (32594.4760 without restraints) Performing minimization step: 217. Total energy = 32531.0616 kcal/mol (32502.8526 without restraints) Performing minimization step: 218. Total energy = 32440.2076 kcal/mol (32412.1013 without restraints) Performing minimization step: 219. Total energy = 32350.2139 kcal/mol (32322.2088 without restraints) Performing minimization step: 220. Total energy = 32261.0675 kcal/mol (32233.1619 without restraints) Performing minimization step: 221. Total energy = 32172.7559 kcal/mol (32144.9488 without restraints) Performing minimization step: 222. Total energy = 32085.2672 kcal/mol (32057.5569 without restraints) Performing minimization step: 223. Total energy = 31998.5884 kcal/mol (31970.9736 without restraints) Performing minimization step: 224. Total energy = 31912.7079 kcal/mol (31885.1870 without restraints) Performing minimization step: 225. Total energy = 31827.6136 kcal/mol (31800.1853 without restraints) Performing minimization step: 226. Total energy = 31743.2940 kcal/mol (31715.9568 without restraints) Performing minimization step: 227. Total energy = 31659.7375 kcal/mol (31632.4903 without restraints) Performing minimization step: 228. Total energy = 31576.9333 kcal/mol (31549.7748 without restraints) Performing minimization step: 229. Total energy = 31494.8705 kcal/mol (31467.7993 without restraints) Performing minimization step: 230. Total energy = 31413.5376 kcal/mol (31386.5524 without restraints) Performing minimization step: 231. Total energy = 31332.9242 kcal/mol (31306.0236 without restraints) Performing minimization step: 232. Total energy = 31253.0199 kcal/mol (31226.2029 without restraints) Performing minimization step: 233. Total energy = 31173.8144 kcal/mol (31147.0800 without restraints) Performing minimization step: 234. Total energy = 31095.2972 kcal/mol (31068.6439 without restraints) Performing minimization step: 235. Total energy = 31017.4591 kcal/mol (30990.8858 without restraints) Performing minimization step: 236. Total energy = 30940.2895 kcal/mol (30913.7952 without restraints) Performing minimization step: 237. Total energy = 30863.7792 kcal/mol (30837.3626 without restraints) Performing minimization step: 238. Total energy = 30787.9183 kcal/mol (30761.5784 without restraints) Performing minimization step: 239. Total energy = 30712.6984 kcal/mol (30686.4340 without restraints) Performing minimization step: 240. Total energy = 30638.1094 kcal/mol (30611.9196 without restraints) Performing minimization step: 241. Total energy = 30564.1428 kcal/mol (30538.0265 without restraints) Performing minimization step: 242. Total energy = 30490.7893 kcal/mol (30464.7454 without restraints) Performing minimization step: 243. Total energy = 30418.0406 kcal/mol (30392.0681 without restraints) Performing minimization step: 244. Total energy = 30345.8883 kcal/mol (30319.9862 without restraints) Performing minimization step: 245. Total energy = 30274.3234 kcal/mol (30248.4907 without restraints) Performing minimization step: 246. Total energy = 30203.3377 kcal/mol (30177.5734 without restraints) Performing minimization step: 247. Total energy = 30132.9233 kcal/mol (30107.2266 without restraints) Performing minimization step: 248. Total energy = 30063.0720 kcal/mol (30037.4419 without restraints) Performing minimization step: 249. Total energy = 29993.7759 kcal/mol (29968.2112 without restraints) Performing minimization step: 250. Total energy = 29925.0276 kcal/mol (29899.5280 without restraints) Performing minimization step: 251. Total energy = 29856.8196 kcal/mol (29831.3838 without restraints) Performing minimization step: 252. Total energy = 29789.1437 kcal/mol (29763.7708 without restraints) Performing minimization step: 253. Total energy = 29721.9931 kcal/mol (29696.6825 without restraints) Performing minimization step: 254. Total energy = 29655.3607 kcal/mol (29630.1113 without restraints) Performing minimization step: 255. Total energy = 29589.2385 kcal/mol (29564.0496 without restraints) Performing minimization step: 256. Total energy = 29523.6200 kcal/mol (29498.4906 without restraints) Performing minimization step: 257. Total energy = 29458.4981 kcal/mol (29433.4277 without restraints) Performing minimization step: 258. Total energy = 29393.8663 kcal/mol (29368.8539 without restraints) Performing minimization step: 259. Total energy = 29329.7175 kcal/mol (29304.7623 without restraints) Performing minimization step: 260. Total energy = 29266.0456 kcal/mol (29241.1469 without restraints) Performing minimization step: 261. Total energy = 29202.8439 kcal/mol (29178.0010 without restraints) Performing minimization step: 262. Total energy = 29140.1068 kcal/mol (29115.3190 without restraints) Performing minimization step: 263. Total energy = 29077.8266 kcal/mol (29053.0929 without restraints) Performing minimization step: 264. Total energy = 29015.9978 kcal/mol (28991.3178 without restraints) Performing minimization step: 265. Total energy = 28954.6147 kcal/mol (28929.9875 without restraints) Performing minimization step: 266. Total energy = 28893.6708 kcal/mol (28869.0957 without restraints) Performing minimization step: 267. Total energy = 28833.1603 kcal/mol (28808.6366 without restraints) Performing minimization step: 268. Total energy = 28773.0773 kcal/mol (28748.6044 without restraints) Performing minimization step: 269. Total energy = 28713.4165 kcal/mol (28688.9939 without restraints) Performing minimization step: 270. Total energy = 28654.1722 kcal/mol (28629.7992 without restraints) Performing minimization step: 271. Total energy = 28595.3393 kcal/mol (28571.0150 without restraints) Performing minimization step: 272. Total energy = 28536.9121 kcal/mol (28512.6361 without restraints) Performing minimization step: 273. Total energy = 28478.8852 kcal/mol (28454.6567 without restraints) Performing minimization step: 274. Total energy = 28421.2532 kcal/mol (28397.0720 without restraints) Performing minimization step: 275. Total energy = 28364.0113 kcal/mol (28339.8763 without restraints) Performing minimization step: 276. Total energy = 28307.1543 kcal/mol (28283.0651 without restraints) Performing minimization step: 277. Total energy = 28250.6769 kcal/mol (28226.6330 without restraints) Performing minimization step: 278. Total energy = 28194.5745 kcal/mol (28170.5753 without restraints) Performing minimization step: 279. Total energy = 28138.8424 kcal/mol (28114.8873 without restraints) Performing minimization step: 280. Total energy = 28083.4753 kcal/mol (28059.5638 without restraints) Performing minimization step: 281. Total energy = 28028.4688 kcal/mol (28004.6003 without restraints) Performing minimization step: 282. Total energy = 27973.8188 kcal/mol (27949.9929 without restraints) Performing minimization step: 283. Total energy = 27919.5209 kcal/mol (27895.7367 without restraints) Performing minimization step: 284. Total energy = 27865.5692 kcal/mol (27841.8264 without restraints) Performing minimization step: 285. Total energy = 27811.9599 kcal/mol (27788.2581 without restraints) Performing minimization step: 286. Total energy = 27758.6893 kcal/mol (27735.0280 without restraints) Performing minimization step: 287. Total energy = 27705.7530 kcal/mol (27682.1317 without restraints) Performing minimization step: 288. Total energy = 27653.1464 kcal/mol (27629.5644 without restraints) Performing minimization step: 289. Total energy = 27600.8658 kcal/mol (27577.3228 without restraints) Performing minimization step: 290. Total energy = 27548.9066 kcal/mol (27525.4021 without restraints) Performing minimization step: 291. Total energy = 27497.2653 kcal/mol (27473.7988 without restraints) Performing minimization step: 292. Total energy = 27445.9383 kcal/mol (27422.5094 without restraints) Performing minimization step: 293. Total energy = 27394.9211 kcal/mol (27371.5295 without restraints) Performing minimization step: 294. Total energy = 27344.2100 kcal/mol (27320.8549 without restraints) Performing minimization step: 295. Total energy = 27293.8011 kcal/mol (27270.4823 without restraints) Performing minimization step: 296. Total energy = 27243.6910 kcal/mol (27220.4080 without restraints) Performing minimization step: 297. Total energy = 27193.8755 kcal/mol (27170.6279 without restraints) Performing minimization step: 298. Total energy = 27144.3520 kcal/mol (27121.1394 without restraints) Performing minimization step: 299. Total energy = 27095.1164 kcal/mol (27071.9382 without restraints) Performing minimization step: 300. Total energy = 27046.1649 kcal/mol (27023.0211 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 301. Total energy = 26997.4951 kcal/mol (26974.3851 without restraints) Performing minimization step: 302. Total energy = 26949.1030 kcal/mol (26926.0264 without restraints) Performing minimization step: 303. Total energy = 26900.9853 kcal/mol (26877.9416 without restraints) Performing minimization step: 304. Total energy = 26853.1389 kcal/mol (26830.1279 without restraints) Performing minimization step: 305. Total energy = 26805.5607 kcal/mol (26782.5821 without restraints) Performing minimization step: 306. Total energy = 26758.2477 kcal/mol (26735.3009 without restraints) Performing minimization step: 307. Total energy = 26711.1963 kcal/mol (26688.2810 without restraints) Performing minimization step: 308. Total energy = 26664.4032 kcal/mol (26641.5191 without restraints) Performing minimization step: 309. Total energy = 26617.8662 kcal/mol (26595.0129 without restraints) Performing minimization step: 310. Total energy = 26571.5817 kcal/mol (26548.7589 without restraints) Performing minimization step: 311. Total energy = 26525.5473 kcal/mol (26502.7547 without restraints) Performing minimization step: 312. Total energy = 26479.7595 kcal/mol (26456.9965 without restraints) Performing minimization step: 313. Total energy = 26434.2160 kcal/mol (26411.4827 without restraints) Performing minimization step: 314. Total energy = 26388.9137 kcal/mol (26366.2095 without restraints) Performing minimization step: 315. Total energy = 26343.8501 kcal/mol (26321.1749 without restraints) Performing minimization step: 316. Total energy = 26299.0226 kcal/mol (26276.3760 without restraints) Performing minimization step: 317. Total energy = 26254.4281 kcal/mol (26231.8096 without restraints) Performing minimization step: 318. Total energy = 26210.0641 kcal/mol (26187.4734 without restraints) Performing minimization step: 319. Total energy = 26165.9281 kcal/mol (26143.3653 without restraints) Performing minimization step: 320. Total energy = 26122.0182 kcal/mol (26099.4827 without restraints) Performing minimization step: 321. Total energy = 26078.3304 kcal/mol (26055.8220 without restraints) Performing minimization step: 322. Total energy = 26034.8643 kcal/mol (26012.3826 without restraints) Performing minimization step: 323. Total energy = 25991.6158 kcal/mol (25969.1606 without restraints) Performing minimization step: 324. Total energy = 25948.5829 kcal/mol (25926.1540 without restraints) Performing minimization step: 325. Total energy = 25905.7637 kcal/mol (25883.3607 without restraints) Performing minimization step: 326. Total energy = 25863.1554 kcal/mol (25840.7780 without restraints) Performing minimization step: 327. Total energy = 25820.7560 kcal/mol (25798.4042 without restraints) Performing minimization step: 328. Total energy = 25778.5632 kcal/mol (25756.2366 without restraints) Performing minimization step: 329. Total energy = 25736.5746 kcal/mol (25714.2727 without restraints) Performing minimization step: 330. Total energy = 25694.7880 kcal/mol (25672.5108 without restraints) Performing minimization step: 331. Total energy = 25653.2016 kcal/mol (25630.9488 without restraints) Performing minimization step: 332. Total energy = 25611.8133 kcal/mol (25589.5848 without restraints) Performing minimization step: 333. Total energy = 25570.6207 kcal/mol (25548.4160 without restraints) Performing minimization step: 334. Total energy = 25529.6218 kcal/mol (25507.4408 without restraints) Performing minimization step: 335. Total energy = 25488.8150 kcal/mol (25466.6576 without restraints) Performing minimization step: 336. Total energy = 25448.1977 kcal/mol (25426.0634 without restraints) Performing minimization step: 337. Total energy = 25407.7680 kcal/mol (25385.6566 without restraints) Performing minimization step: 338. Total energy = 25367.5244 kcal/mol (25345.4359 without restraints) Performing minimization step: 339. Total energy = 25327.4646 kcal/mol (25305.3986 without restraints) Performing minimization step: 340. Total energy = 25287.5869 kcal/mol (25265.5433 without restraints) Performing minimization step: 341. Total energy = 25247.8888 kcal/mol (25225.8674 without restraints) Performing minimization step: 342. Total energy = 25208.3694 kcal/mol (25186.3698 without restraints) Performing minimization step: 343. Total energy = 25169.0269 kcal/mol (25147.0491 without restraints) Performing minimization step: 344. Total energy = 25129.8591 kcal/mol (25107.9027 without restraints) Performing minimization step: 345. Total energy = 25090.8641 kcal/mol (25068.9288 without restraints) Performing minimization step: 346. Total energy = 25052.0403 kcal/mol (25030.1263 without restraints) Performing minimization step: 347. Total energy = 25013.3868 kcal/mol (24991.4940 without restraints) Performing minimization step: 348. Total energy = 24974.9015 kcal/mol (24953.0292 without restraints) Performing minimization step: 349. Total energy = 24936.5818 kcal/mol (24914.7300 without restraints) Performing minimization step: 350. Total energy = 24898.4272 kcal/mol (24876.5958 without restraints) Performing minimization step: 351. Total energy = 24860.4359 kcal/mol (24838.6247 without restraints) Performing minimization step: 352. Total energy = 24822.6060 kcal/mol (24800.8147 without restraints) Performing minimization step: 353. Total energy = 24784.9356 kcal/mol (24763.1641 without restraints) Performing minimization step: 354. Total energy = 24747.4240 kcal/mol (24725.6723 without restraints) Performing minimization step: 355. Total energy = 24710.0695 kcal/mol (24688.3372 without restraints) Performing minimization step: 356. Total energy = 24672.8706 kcal/mol (24651.1576 without restraints) Performing minimization step: 357. Total energy = 24635.8260 kcal/mol (24614.1321 without restraints) Performing minimization step: 358. Total energy = 24598.9338 kcal/mol (24577.2588 without restraints) Performing minimization step: 359. Total energy = 24562.1925 kcal/mol (24540.5363 without restraints) Performing minimization step: 360. Total energy = 24525.6011 kcal/mol (24503.9635 without restraints) Performing minimization step: 361. Total energy = 24489.1583 kcal/mol (24467.5391 without restraints) Performing minimization step: 362. Total energy = 24452.8619 kcal/mol (24431.2611 without restraints) Performing minimization step: 363. Total energy = 24416.7114 kcal/mol (24395.1286 without restraints) Performing minimization step: 364. Total energy = 24380.7052 kcal/mol (24359.1406 without restraints) Performing minimization step: 365. Total energy = 24344.8420 kcal/mol (24323.2951 without restraints) Performing minimization step: 366. Total energy = 24309.1206 kcal/mol (24287.5916 without restraints) Performing minimization step: 367. Total energy = 24273.5399 kcal/mol (24252.0282 without restraints) Performing minimization step: 368. Total energy = 24238.0979 kcal/mol (24216.6038 without restraints) Performing minimization step: 369. Total energy = 24202.7943 kcal/mol (24181.3175 without restraints) Performing minimization step: 370. Total energy = 24167.6276 kcal/mol (24146.1680 without restraints) Performing minimization step: 371. Total energy = 24132.5967 kcal/mol (24111.1541 without restraints) Performing minimization step: 372. Total energy = 24097.7002 kcal/mol (24076.2746 without restraints) Performing minimization step: 373. Total energy = 24062.9373 kcal/mol (24041.5283 without restraints) Performing minimization step: 374. Total energy = 24028.3059 kcal/mol (24006.9136 without restraints) Performing minimization step: 375. Total energy = 23993.8054 kcal/mol (23972.4294 without restraints) Performing minimization step: 376. Total energy = 23959.4346 kcal/mol (23938.0751 without restraints) Performing minimization step: 377. Total energy = 23925.1928 kcal/mol (23903.8495 without restraints) Performing minimization step: 378. Total energy = 23891.0783 kcal/mol (23869.7512 without restraints) Performing minimization step: 379. Total energy = 23857.0908 kcal/mol (23835.7796 without restraints) Performing minimization step: 380. Total energy = 23823.2288 kcal/mol (23801.9334 without restraints) Performing minimization step: 381. Total energy = 23789.4912 kcal/mol (23768.2116 without restraints) Performing minimization step: 382. Total energy = 23755.8772 kcal/mol (23734.6132 without restraints) Performing minimization step: 383. Total energy = 23722.3855 kcal/mol (23701.1371 without restraints) Performing minimization step: 384. Total energy = 23689.0154 kcal/mol (23667.7824 without restraints) Performing minimization step: 385. Total energy = 23655.7659 kcal/mol (23634.5481 without restraints) Performing minimization step: 386. Total energy = 23622.6356 kcal/mol (23601.4331 without restraints) Performing minimization step: 387. Total energy = 23589.6233 kcal/mol (23568.4357 without restraints) Performing minimization step: 388. Total energy = 23556.7289 kcal/mol (23535.5564 without restraints) Performing minimization step: 389. Total energy = 23523.9511 kcal/mol (23502.7932 without restraints) Performing minimization step: 390. Total energy = 23491.2888 kcal/mol (23470.1458 without restraints) Performing minimization step: 391. Total energy = 23458.7415 kcal/mol (23437.6132 without restraints) Performing minimization step: 392. Total energy = 23426.3080 kcal/mol (23405.1942 without restraints) Performing minimization step: 393. Total energy = 23393.9876 kcal/mol (23372.8881 without restraints) Performing minimization step: 394. Total energy = 23361.7792 kcal/mol (23340.6940 without restraints) Performing minimization step: 395. Total energy = 23329.6820 kcal/mol (23308.6113 without restraints) Performing minimization step: 396. Total energy = 23297.6953 kcal/mol (23276.6386 without restraints) Performing minimization step: 397. Total energy = 23265.8179 kcal/mol (23244.7754 without restraints) Performing minimization step: 398. Total energy = 23234.0494 kcal/mol (23213.0208 without restraints) Performing minimization step: 399. Total energy = 23202.3890 kcal/mol (23181.3742 without restraints) Performing minimization step: 400. Total energy = 23170.8352 kcal/mol (23149.8342 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 401. Total energy = 23139.3882 kcal/mol (23118.4009 without restraints) Performing minimization step: 402. Total energy = 23108.0468 kcal/mol (23087.0730 without restraints) Performing minimization step: 403. Total energy = 23076.8091 kcal/mol (23055.8489 without restraints) Performing minimization step: 404. Total energy = 23045.6763 kcal/mol (23024.7294 without restraints) Performing minimization step: 405. Total energy = 23014.6461 kcal/mol (22993.7127 without restraints) Performing minimization step: 406. Total energy = 22983.7187 kcal/mol (22962.7984 without restraints) Performing minimization step: 407. Total energy = 22952.8929 kcal/mol (22931.9858 without restraints) Performing minimization step: 408. Total energy = 22922.1683 kcal/mol (22901.2744 without restraints) Performing minimization step: 409. Total energy = 22891.5438 kcal/mol (22870.6628 without restraints) Performing minimization step: 410. Total energy = 22861.0193 kcal/mol (22840.1512 without restraints) Performing minimization step: 411. Total energy = 22830.5931 kcal/mol (22809.7379 without restraints) Performing minimization step: 412. Total energy = 22800.2656 kcal/mol (22779.4230 without restraints) Performing minimization step: 413. Total energy = 22770.0346 kcal/mol (22749.2048 without restraints) Performing minimization step: 414. Total energy = 22739.9008 kcal/mol (22719.0836 without restraints) Performing minimization step: 415. Total energy = 22709.8633 kcal/mol (22689.0585 without restraints) Performing minimization step: 416. Total energy = 22679.9211 kcal/mol (22659.1289 without restraints) Performing minimization step: 417. Total energy = 22650.0739 kcal/mol (22629.2941 without restraints) Performing minimization step: 418. Total energy = 22620.3207 kcal/mol (22599.5532 without restraints) Performing minimization step: 419. Total energy = 22590.6610 kcal/mol (22569.9057 without restraints) Performing minimization step: 420. Total energy = 22561.0943 kcal/mol (22540.3513 without restraints) Performing minimization step: 421. Total energy = 22531.6197 kcal/mol (22510.8886 without restraints) Performing minimization step: 422. Total energy = 22502.2369 kcal/mol (22481.5181 without restraints) Performing minimization step: 423. Total energy = 22472.9450 kcal/mol (22452.2380 without restraints) Performing minimization step: 424. Total energy = 22443.7437 kcal/mol (22423.0486 without restraints) Performing minimization step: 425. Total energy = 22414.6324 kcal/mol (22393.9491 without restraints) Performing minimization step: 426. Total energy = 22385.6096 kcal/mol (22364.9381 without restraints) Performing minimization step: 427. Total energy = 22356.6761 kcal/mol (22336.0163 without restraints) Performing minimization step: 428. Total energy = 22327.8307 kcal/mol (22307.1826 without restraints) Performing minimization step: 429. Total energy = 22299.0730 kcal/mol (22278.4364 without restraints) Performing minimization step: 430. Total energy = 22270.4021 kcal/mol (22249.7767 without restraints) Performing minimization step: 431. Total energy = 22241.8177 kcal/mol (22221.2041 without restraints) Performing minimization step: 432. Total energy = 22213.3194 kcal/mol (22192.7171 without restraints) Performing minimization step: 433. Total energy = 22184.9063 kcal/mol (22164.3154 without restraints) Performing minimization step: 434. Total energy = 22156.5779 kcal/mol (22135.9982 without restraints) Performing minimization step: 435. Total energy = 22128.3338 kcal/mol (22107.7654 without restraints) Performing minimization step: 436. Total energy = 22100.1736 kcal/mol (22079.6164 without restraints) Performing minimization step: 437. Total energy = 22072.0972 kcal/mol (22051.5511 without restraints) Performing minimization step: 438. Total energy = 22044.1037 kcal/mol (22023.5686 without restraints) Performing minimization step: 439. Total energy = 22016.1923 kcal/mol (21995.6682 without restraints) Performing minimization step: 440. Total energy = 21988.3624 kcal/mol (21967.8492 without restraints) Performing minimization step: 441. Total energy = 21960.6138 kcal/mol (21940.1115 without restraints) Performing minimization step: 442. Total energy = 21932.9463 kcal/mol (21912.4548 without restraints) Performing minimization step: 443. Total energy = 21905.3585 kcal/mol (21884.8776 without restraints) Performing minimization step: 444. Total energy = 21877.8510 kcal/mol (21857.3812 without restraints) Performing minimization step: 445. Total energy = 21850.4238 kcal/mol (21829.9645 without restraints) Performing minimization step: 446. Total energy = 21823.0749 kcal/mol (21802.6262 without restraints) Performing minimization step: 447. Total energy = 21795.8044 kcal/mol (21775.3663 without restraints) Performing minimization step: 448. Total energy = 21768.6122 kcal/mol (21748.1846 without restraints) Performing minimization step: 449. Total energy = 21741.4976 kcal/mol (21721.0805 without restraints) Performing minimization step: 450. Total energy = 21714.4599 kcal/mol (21694.0532 without restraints) Performing minimization step: 451. Total energy = 21687.4995 kcal/mol (21667.1036 without restraints) Performing minimization step: 452. Total energy = 21660.6154 kcal/mol (21640.2292 without restraints) Performing minimization step: 453. Total energy = 21633.8065 kcal/mol (21613.4307 without restraints) Performing minimization step: 454. Total energy = 21607.0732 kcal/mol (21586.7078 without restraints) Performing minimization step: 455. Total energy = 21580.4150 kcal/mol (21560.0596 without restraints) Performing minimization step: 456. Total energy = 21553.8315 kcal/mol (21533.4863 without restraints) Performing minimization step: 457. Total energy = 21527.3219 kcal/mol (21506.9868 without restraints) Performing minimization step: 458. Total energy = 21500.8863 kcal/mol (21480.5614 without restraints) Performing minimization step: 459. Total energy = 21474.5240 kcal/mol (21454.2087 without restraints) Performing minimization step: 460. Total energy = 21448.2344 kcal/mol (21427.9292 without restraints) Performing minimization step: 461. Total energy = 21422.0176 kcal/mol (21401.7225 without restraints) Performing minimization step: 462. Total energy = 21395.8733 kcal/mol (21375.5880 without restraints) Performing minimization step: 463. Total energy = 21369.8003 kcal/mol (21349.5247 without restraints) Performing minimization step: 464. Total energy = 21343.7989 kcal/mol (21323.5332 without restraints) Performing minimization step: 465. Total energy = 21317.8692 kcal/mol (21297.6135 without restraints) Performing minimization step: 466. Total energy = 21292.0106 kcal/mol (21271.7645 without restraints) Performing minimization step: 467. Total energy = 21266.2219 kcal/mol (21245.9854 without restraints) Performing minimization step: 468. Total energy = 21240.5025 kcal/mol (21220.2752 without restraints) Performing minimization step: 469. Total energy = 21214.8526 kcal/mol (21194.6353 without restraints) Performing minimization step: 470. Total energy = 21189.2725 kcal/mol (21169.0648 without restraints) Performing minimization step: 471. Total energy = 21163.7615 kcal/mol (21143.5633 without restraints) Performing minimization step: 472. Total energy = 21138.3193 kcal/mol (21118.1305 without restraints) Performing minimization step: 473. Total energy = 21112.9446 kcal/mol (21092.7654 without restraints) Performing minimization step: 474. Total energy = 21087.6383 kcal/mol (21067.4683 without restraints) Performing minimization step: 475. Total energy = 21062.3997 kcal/mol (21042.2389 without restraints) Performing minimization step: 476. Total energy = 21037.2284 kcal/mol (21017.0772 without restraints) Performing minimization step: 477. Total energy = 21012.1240 kcal/mol (20991.9821 without restraints) Performing minimization step: 478. Total energy = 20987.0860 kcal/mol (20966.9535 without restraints) Performing minimization step: 479. Total energy = 20962.1138 kcal/mol (20941.9902 without restraints) Performing minimization step: 480. Total energy = 20937.2076 kcal/mol (20917.0933 without restraints) Performing minimization step: 481. Total energy = 20912.3673 kcal/mol (20892.2622 without restraints) Performing minimization step: 482. Total energy = 20887.5921 kcal/mol (20867.4959 without restraints) Performing minimization step: 483. Total energy = 20862.8818 kcal/mol (20842.7950 without restraints) Performing minimization step: 484. Total energy = 20838.2366 kcal/mol (20818.1587 without restraints) Performing minimization step: 485. Total energy = 20813.6557 kcal/mol (20793.5869 without restraints) Performing minimization step: 486. Total energy = 20789.1383 kcal/mol (20769.0785 without restraints) Performing minimization step: 487. Total energy = 20764.6848 kcal/mol (20744.6339 without restraints) Performing minimization step: 488. Total energy = 20740.2950 kcal/mol (20720.2531 without restraints) Performing minimization step: 489. Total energy = 20715.9684 kcal/mol (20695.9354 without restraints) Performing minimization step: 490. Total energy = 20691.7051 kcal/mol (20671.6809 without restraints) Performing minimization step: 491. Total energy = 20667.5040 kcal/mol (20647.4887 without restraints) Performing minimization step: 492. Total energy = 20643.3653 kcal/mol (20623.3588 without restraints) Performing minimization step: 493. Total energy = 20619.2889 kcal/mol (20599.2913 without restraints) Performing minimization step: 494. Total energy = 20595.2737 kcal/mol (20575.2846 without restraints) Performing minimization step: 495. Total energy = 20571.3198 kcal/mol (20551.3396 without restraints) Performing minimization step: 496. Total energy = 20547.4278 kcal/mol (20527.4561 without restraints) Performing minimization step: 497. Total energy = 20523.5963 kcal/mol (20503.6334 without restraints) Performing minimization step: 498. Total energy = 20499.8250 kcal/mol (20479.8708 without restraints) Performing minimization step: 499. Total energy = 20476.1150 kcal/mol (20456.1692 without restraints) Performing minimization step: 500. Total energy = 20452.4648 kcal/mol (20432.5276 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 501. Total energy = 20428.8739 kcal/mol (20408.9452 without restraints) Performing minimization step: 502. Total energy = 20405.3436 kcal/mol (20385.4235 without restraints) Performing minimization step: 503. Total energy = 20381.8725 kcal/mol (20361.9612 without restraints) Performing minimization step: 504. Total energy = 20358.4604 kcal/mol (20338.5572 without restraints) Performing minimization step: 505. Total energy = 20335.1067 kcal/mol (20315.2120 without restraints) Performing minimization step: 506. Total energy = 20311.8116 kcal/mol (20291.9252 without restraints) Performing minimization step: 507. Total energy = 20288.5750 kcal/mol (20268.6970 without restraints) Performing minimization step: 508. Total energy = 20265.3962 kcal/mol (20245.5266 without restraints) Performing minimization step: 509. Total energy = 20242.2755 kcal/mol (20222.4142 without restraints) Performing minimization step: 510. Total energy = 20219.2122 kcal/mol (20199.3592 without restraints) Performing minimization step: 511. Total energy = 20196.2062 kcal/mol (20176.3615 without restraints) Performing minimization step: 512. Total energy = 20173.2573 kcal/mol (20153.4209 without restraints) Performing minimization step: 513. Total energy = 20150.3646 kcal/mol (20130.5363 without restraints) Performing minimization step: 514. Total energy = 20127.5289 kcal/mol (20107.7088 without restraints) Performing minimization step: 515. Total energy = 20104.7495 kcal/mol (20084.9377 without restraints) Performing minimization step: 516. Total energy = 20082.0266 kcal/mol (20062.2228 without restraints) Performing minimization step: 517. Total energy = 20059.3591 kcal/mol (20039.5634 without restraints) Performing minimization step: 518. Total energy = 20036.7479 kcal/mol (20016.9604 without restraints) Performing minimization step: 519. Total energy = 20014.1923 kcal/mol (19994.4128 without restraints) Performing minimization step: 520. Total energy = 19991.6916 kcal/mol (19971.9202 without restraints) Performing minimization step: 521. Total energy = 19969.2462 kcal/mol (19949.4829 without restraints) Performing minimization step: 522. Total energy = 19946.8560 kcal/mol (19927.1006 without restraints) Performing minimization step: 523. Total energy = 19924.5199 kcal/mol (19904.7727 without restraints) Performing minimization step: 524. Total energy = 19902.2380 kcal/mol (19882.4987 without restraints) Performing minimization step: 525. Total energy = 19880.0110 kcal/mol (19860.2796 without restraints) Performing minimization step: 526. Total energy = 19857.8373 kcal/mol (19838.1137 without restraints) Performing minimization step: 527. Total energy = 19835.7173 kcal/mol (19816.0017 without restraints) Performing minimization step: 528. Total energy = 19813.6515 kcal/mol (19793.9438 without restraints) Performing minimization step: 529. Total energy = 19791.6388 kcal/mol (19771.9389 without restraints) Performing minimization step: 530. Total energy = 19769.6788 kcal/mol (19749.9868 without restraints) Performing minimization step: 531. Total energy = 19747.7720 kcal/mol (19728.0877 without restraints) Performing minimization step: 532. Total energy = 19725.9183 kcal/mol (19706.2418 without restraints) Performing minimization step: 533. Total energy = 19704.1167 kcal/mol (19684.4481 without restraints) Performing minimization step: 534. Total energy = 19682.3675 kcal/mol (19662.7066 without restraints) Performing minimization step: 535. Total energy = 19660.6704 kcal/mol (19641.0171 without restraints) Performing minimization step: 536. Total energy = 19639.0250 kcal/mol (19619.3795 without restraints) Performing minimization step: 537. Total energy = 19617.4313 kcal/mol (19597.7935 without restraints) Performing minimization step: 538. Total energy = 19595.8895 kcal/mol (19576.2593 without restraints) Performing minimization step: 539. Total energy = 19574.3988 kcal/mol (19554.7763 without restraints) Performing minimization step: 540. Total energy = 19552.9596 kcal/mol (19533.3448 without restraints) Performing minimization step: 541. Total energy = 19531.5712 kcal/mol (19511.9639 without restraints) Performing minimization step: 542. Total energy = 19510.2336 kcal/mol (19490.6341 without restraints) Performing minimization step: 543. Total energy = 19488.9468 kcal/mol (19469.3546 without restraints) Performing minimization step: 544. Total energy = 19467.7099 kcal/mol (19448.1254 without restraints) Performing minimization step: 545. Total energy = 19446.5237 kcal/mol (19426.9468 without restraints) Performing minimization step: 546. Total energy = 19425.3877 kcal/mol (19405.8183 without restraints) Performing minimization step: 547. Total energy = 19404.3013 kcal/mol (19384.7393 without restraints) Performing minimization step: 548. Total energy = 19383.2647 kcal/mol (19363.7102 without restraints) Performing minimization step: 549. Total energy = 19362.2772 kcal/mol (19342.7302 without restraints) Performing minimization step: 550. Total energy = 19341.3388 kcal/mol (19321.7992 without restraints) Performing minimization step: 551. Total energy = 19320.4508 kcal/mol (19300.9186 without restraints) Performing minimization step: 552. Total energy = 19299.6107 kcal/mol (19280.0859 without restraints) Performing minimization step: 553. Total energy = 19278.8197 kcal/mol (19259.3024 without restraints) Performing minimization step: 554. Total energy = 19258.0776 kcal/mol (19238.5678 without restraints) Performing minimization step: 555. Total energy = 19237.3837 kcal/mol (19217.8812 without restraints) Performing minimization step: 556. Total energy = 19216.7380 kcal/mol (19197.2428 without restraints) Performing minimization step: 557. Total energy = 19196.1401 kcal/mol (19176.6521 without restraints) Performing minimization step: 558. Total energy = 19175.5901 kcal/mol (19156.1095 without restraints) Performing minimization step: 559. Total energy = 19155.0883 kcal/mol (19135.6150 without restraints) Performing minimization step: 560. Total energy = 19134.6337 kcal/mol (19115.1675 without restraints) Performing minimization step: 561. Total energy = 19114.2267 kcal/mol (19094.7679 without restraints) Performing minimization step: 562. Total energy = 19093.8678 kcal/mol (19074.4162 without restraints) Performing minimization step: 563. Total energy = 19073.5551 kcal/mol (19054.1108 without restraints) Performing minimization step: 564. Total energy = 19053.2897 kcal/mol (19033.8527 without restraints) Performing minimization step: 565. Total energy = 19033.0707 kcal/mol (19013.6407 without restraints) Performing minimization step: 566. Total energy = 19012.8985 kcal/mol (18993.4756 without restraints) Performing minimization step: 567. Total energy = 18992.7725 kcal/mol (18973.3568 without restraints) Performing minimization step: 568. Total energy = 18972.6932 kcal/mol (18953.2846 without restraints) Performing minimization step: 569. Total energy = 18952.6600 kcal/mol (18933.2586 without restraints) Performing minimization step: 570. Total energy = 18932.6725 kcal/mol (18913.2783 without restraints) Performing minimization step: 571. Total energy = 18912.7311 kcal/mol (18893.3439 without restraints) Performing minimization step: 572. Total energy = 18892.8357 kcal/mol (18873.4555 without restraints) Performing minimization step: 573. Total energy = 18872.9858 kcal/mol (18853.6128 without restraints) Performing minimization step: 574. Total energy = 18853.1812 kcal/mol (18833.8153 without restraints) Performing minimization step: 575. Total energy = 18833.4217 kcal/mol (18814.0628 without restraints) Performing minimization step: 576. Total energy = 18813.7078 kcal/mol (18794.3559 without restraints) Performing minimization step: 577. Total energy = 18794.0380 kcal/mol (18774.6930 without restraints) Performing minimization step: 578. Total energy = 18774.4138 kcal/mol (18755.0759 without restraints) Performing minimization step: 579. Total energy = 18754.8339 kcal/mol (18735.5031 without restraints) Performing minimization step: 580. Total energy = 18735.2987 kcal/mol (18715.9749 without restraints) Performing minimization step: 581. Total energy = 18715.8077 kcal/mol (18696.4907 without restraints) Performing minimization step: 582. Total energy = 18696.3607 kcal/mol (18677.0505 without restraints) Performing minimization step: 583. Total energy = 18676.9573 kcal/mol (18657.6542 without restraints) Performing minimization step: 584. Total energy = 18657.5984 kcal/mol (18638.3022 without restraints) Performing minimization step: 585. Total energy = 18638.2836 kcal/mol (18618.9944 without restraints) Performing minimization step: 586. Total energy = 18619.0123 kcal/mol (18599.7300 without restraints) Performing minimization step: 587. Total energy = 18599.7844 kcal/mol (18580.5087 without restraints) Performing minimization step: 588. Total energy = 18580.5997 kcal/mol (18561.3311 without restraints) Performing minimization step: 589. Total energy = 18561.4585 kcal/mol (18542.1967 without restraints) Performing minimization step: 590. Total energy = 18542.3605 kcal/mol (18523.1055 without restraints) Performing minimization step: 591. Total energy = 18523.3051 kcal/mol (18504.0567 without restraints) Performing minimization step: 592. Total energy = 18504.2929 kcal/mol (18485.0515 without restraints) Performing minimization step: 593. Total energy = 18485.3233 kcal/mol (18466.0887 without restraints) Performing minimization step: 594. Total energy = 18466.3962 kcal/mol (18447.1684 without restraints) Performing minimization step: 595. Total energy = 18447.5113 kcal/mol (18428.2903 without restraints) Performing minimization step: 596. Total energy = 18428.6689 kcal/mol (18409.4547 without restraints) Performing minimization step: 597. Total energy = 18409.8687 kcal/mol (18390.6611 without restraints) Performing minimization step: 598. Total energy = 18391.1102 kcal/mol (18371.9093 without restraints) Performing minimization step: 599. Total energy = 18372.3942 kcal/mol (18353.2000 without restraints) Performing minimization step: 600. Total energy = 18353.7196 kcal/mol (18334.5321 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 601. Total energy = 18335.0861 kcal/mol (18315.9054 without restraints) Performing minimization step: 602. Total energy = 18316.4946 kcal/mol (18297.3205 without restraints) Performing minimization step: 603. Total energy = 18297.9448 kcal/mol (18278.7775 without restraints) Performing minimization step: 604. Total energy = 18279.4360 kcal/mol (18260.2752 without restraints) Performing minimization step: 605. Total energy = 18260.9683 kcal/mol (18241.8143 without restraints) Performing minimization step: 606. Total energy = 18242.5411 kcal/mol (18223.3936 without restraints) Performing minimization step: 607. Total energy = 18224.1553 kcal/mol (18205.0145 without restraints) Performing minimization step: 608. Total energy = 18205.8104 kcal/mol (18186.6763 without restraints) Performing minimization step: 609. Total energy = 18187.5061 kcal/mol (18168.3784 without restraints) Performing minimization step: 610. Total energy = 18169.2414 kcal/mol (18150.1202 without restraints) Performing minimization step: 611. Total energy = 18151.0175 kcal/mol (18131.9031 without restraints) Performing minimization step: 612. Total energy = 18132.8338 kcal/mol (18113.7260 without restraints) Performing minimization step: 613. Total energy = 18114.6903 kcal/mol (18095.5888 without restraints) Performing minimization step: 614. Total energy = 18096.5863 kcal/mol (18077.4914 without restraints) Performing minimization step: 615. Total energy = 18078.5228 kcal/mol (18059.4345 without restraints) Performing minimization step: 616. Total energy = 18060.4992 kcal/mol (18041.4172 without restraints) Performing minimization step: 617. Total energy = 18042.5145 kcal/mol (18023.4392 without restraints) Performing minimization step: 618. Total energy = 18024.5698 kcal/mol (18005.5009 without restraints) Performing minimization step: 619. Total energy = 18006.6641 kcal/mol (17987.6017 without restraints) Performing minimization step: 620. Total energy = 17988.7978 kcal/mol (17969.7419 without restraints) Performing minimization step: 621. Total energy = 17970.9706 kcal/mol (17951.9211 without restraints) Performing minimization step: 622. Total energy = 17953.1827 kcal/mol (17934.1397 without restraints) Performing minimization step: 623. Total energy = 17935.4335 kcal/mol (17916.3968 without restraints) Performing minimization step: 624. Total energy = 17917.7228 kcal/mol (17898.6926 without restraints) Performing minimization step: 625. Total energy = 17900.0511 kcal/mol (17881.0274 without restraints) Performing minimization step: 626. Total energy = 17882.4180 kcal/mol (17863.4007 without restraints) Performing minimization step: 627. Total energy = 17864.8237 kcal/mol (17845.8128 without restraints) Performing minimization step: 628. Total energy = 17847.2674 kcal/mol (17828.2628 without restraints) Performing minimization step: 629. Total energy = 17829.7492 kcal/mol (17810.7510 without restraints) Performing minimization step: 630. Total energy = 17812.2691 kcal/mol (17793.2773 without restraints) Performing minimization step: 631. Total energy = 17794.8274 kcal/mol (17775.8419 without restraints) Performing minimization step: 632. Total energy = 17777.4234 kcal/mol (17758.4443 without restraints) Performing minimization step: 633. Total energy = 17760.0568 kcal/mol (17741.0839 without restraints) Performing minimization step: 634. Total energy = 17742.7279 kcal/mol (17723.7614 without restraints) Performing minimization step: 635. Total energy = 17725.4370 kcal/mol (17706.4768 without restraints) Performing minimization step: 636. Total energy = 17708.1834 kcal/mol (17689.2295 without restraints) Performing minimization step: 637. Total energy = 17690.9670 kcal/mol (17672.0195 without restraints) Performing minimization step: 638. Total energy = 17673.7879 kcal/mol (17654.8466 without restraints) Performing minimization step: 639. Total energy = 17656.6457 kcal/mol (17637.7105 without restraints) Performing minimization step: 640. Total energy = 17639.5403 kcal/mol (17620.6115 without restraints) Performing minimization step: 641. Total energy = 17622.4722 kcal/mol (17603.5496 without restraints) Performing minimization step: 642. Total energy = 17605.4410 kcal/mol (17586.5247 without restraints) Performing minimization step: 643. Total energy = 17588.4458 kcal/mol (17569.5358 without restraints) Performing minimization step: 644. Total energy = 17571.4874 kcal/mol (17552.5836 without restraints) Performing minimization step: 645. Total energy = 17554.5655 kcal/mol (17535.6679 without restraints) Performing minimization step: 646. Total energy = 17537.6794 kcal/mol (17518.7879 without restraints) Performing minimization step: 647. Total energy = 17520.8300 kcal/mol (17501.9448 without restraints) Performing minimization step: 648. Total energy = 17504.0168 kcal/mol (17485.1378 without restraints) Performing minimization step: 649. Total energy = 17487.2392 kcal/mol (17468.3664 without restraints) Performing minimization step: 650. Total energy = 17470.4981 kcal/mol (17451.6315 without restraints) Performing minimization step: 651. Total energy = 17453.7928 kcal/mol (17434.9322 without restraints) Performing minimization step: 652. Total energy = 17437.1230 kcal/mol (17418.2686 without restraints) Performing minimization step: 653. Total energy = 17420.4891 kcal/mol (17401.6408 without restraints) Performing minimization step: 654. Total energy = 17403.8907 kcal/mol (17385.0485 without restraints) Performing minimization step: 655. Total energy = 17387.3273 kcal/mol (17368.4913 without restraints) Performing minimization step: 656. Total energy = 17370.7994 kcal/mol (17351.9695 without restraints) Performing minimization step: 657. Total energy = 17354.3071 kcal/mol (17335.4835 without restraints) Performing minimization step: 658. Total energy = 17337.8494 kcal/mol (17319.0317 without restraints) Performing minimization step: 659. Total energy = 17321.4268 kcal/mol (17302.6152 without restraints) Performing minimization step: 660. Total energy = 17305.0386 kcal/mol (17286.2331 without restraints) Performing minimization step: 661. Total energy = 17288.6861 kcal/mol (17269.8866 without restraints) Performing minimization step: 662. Total energy = 17272.3680 kcal/mol (17253.5747 without restraints) Performing minimization step: 663. Total energy = 17256.0840 kcal/mol (17237.2966 without restraints) Performing minimization step: 664. Total energy = 17239.8348 kcal/mol (17221.0534 without restraints) Performing minimization step: 665. Total energy = 17223.6199 kcal/mol (17204.8447 without restraints) Performing minimization step: 666. Total energy = 17207.4395 kcal/mol (17188.6702 without restraints) Performing minimization step: 667. Total energy = 17191.2929 kcal/mol (17172.5297 without restraints) Performing minimization step: 668. Total energy = 17175.1808 kcal/mol (17156.4236 without restraints) Performing minimization step: 669. Total energy = 17159.1025 kcal/mol (17140.3513 without restraints) Performing minimization step: 670. Total energy = 17143.0584 kcal/mol (17124.3131 without restraints) Performing minimization step: 671. Total energy = 17127.0482 kcal/mol (17108.3090 without restraints) Performing minimization step: 672. Total energy = 17111.0713 kcal/mol (17092.3380 without restraints) Performing minimization step: 673. Total energy = 17095.1276 kcal/mol (17076.4003 without restraints) Performing minimization step: 674. Total energy = 17079.2177 kcal/mol (17060.4963 without restraints) Performing minimization step: 675. Total energy = 17063.3414 kcal/mol (17044.6259 without restraints) Performing minimization step: 676. Total energy = 17047.4988 kcal/mol (17028.7893 without restraints) Performing minimization step: 677. Total energy = 17031.6894 kcal/mol (17012.9861 without restraints) Performing minimization step: 678. Total energy = 17015.9125 kcal/mol (16997.2147 without restraints) Performing minimization step: 679. Total energy = 17000.1688 kcal/mol (16981.4770 without restraints) Performing minimization step: 680. Total energy = 16984.4575 kcal/mol (16965.7716 without restraints) Performing minimization step: 681. Total energy = 16968.7797 kcal/mol (16950.0997 without restraints) Performing minimization step: 682. Total energy = 16953.1342 kcal/mol (16934.4601 without restraints) Performing minimization step: 683. Total energy = 16937.5215 kcal/mol (16918.8533 without restraints) Performing minimization step: 684. Total energy = 16921.9420 kcal/mol (16903.2798 without restraints) Performing minimization step: 685. Total energy = 16906.3942 kcal/mol (16887.7378 without restraints) Performing minimization step: 686. Total energy = 16890.8789 kcal/mol (16872.2284 without restraints) Performing minimization step: 687. Total energy = 16875.3957 kcal/mol (16856.7508 without restraints) Performing minimization step: 688. Total energy = 16859.9449 kcal/mol (16841.3061 without restraints) Performing minimization step: 689. Total energy = 16844.5269 kcal/mol (16825.8941 without restraints) Performing minimization step: 690. Total energy = 16829.1409 kcal/mol (16810.5138 without restraints) Performing minimization step: 691. Total energy = 16813.7867 kcal/mol (16795.1655 without restraints) Performing minimization step: 692. Total energy = 16798.4640 kcal/mol (16779.8485 without restraints) Performing minimization step: 693. Total energy = 16783.1727 kcal/mol (16764.5629 without restraints) Performing minimization step: 694. Total energy = 16767.9136 kcal/mol (16749.3096 without restraints) Performing minimization step: 695. Total energy = 16752.6858 kcal/mol (16734.0877 without restraints) Performing minimization step: 696. Total energy = 16737.4897 kcal/mol (16718.8973 without restraints) Performing minimization step: 697. Total energy = 16722.3245 kcal/mol (16703.7379 without restraints) Performing minimization step: 698. Total energy = 16707.1909 kcal/mol (16688.6101 without restraints) Performing minimization step: 699. Total energy = 16692.0882 kcal/mol (16673.5131 without restraints) Performing minimization step: 700. Total energy = 16677.0169 kcal/mol (16658.4476 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 701. Total energy = 16661.9764 kcal/mol (16643.4129 without restraints) Performing minimization step: 702. Total energy = 16646.9671 kcal/mol (16628.4093 without restraints) Performing minimization step: 703. Total energy = 16631.9885 kcal/mol (16613.4365 without restraints) Performing minimization step: 704. Total energy = 16617.0408 kcal/mol (16598.4944 without restraints) Performing minimization step: 705. Total energy = 16602.1237 kcal/mol (16583.5830 without restraints) Performing minimization step: 706. Total energy = 16587.2369 kcal/mol (16568.7019 without restraints) Performing minimization step: 707. Total energy = 16572.3809 kcal/mol (16553.8517 without restraints) Performing minimization step: 708. Total energy = 16557.5556 kcal/mol (16539.0320 without restraints) Performing minimization step: 709. Total energy = 16542.7603 kcal/mol (16524.2425 without restraints) Performing minimization step: 710. Total energy = 16527.9949 kcal/mol (16509.4827 without restraints) Performing minimization step: 711. Total energy = 16513.2598 kcal/mol (16494.7532 without restraints) Performing minimization step: 712. Total energy = 16498.5549 kcal/mol (16480.0541 without restraints) Performing minimization step: 713. Total energy = 16483.8801 kcal/mol (16465.3849 without restraints) Performing minimization step: 714. Total energy = 16469.2356 kcal/mol (16450.7460 without restraints) Performing minimization step: 715. Total energy = 16454.6209 kcal/mol (16436.1371 without restraints) Performing minimization step: 716. Total energy = 16440.0349 kcal/mol (16421.5565 without restraints) Performing minimization step: 717. Total energy = 16425.4785 kcal/mol (16407.0059 without restraints) Performing minimization step: 718. Total energy = 16410.9524 kcal/mol (16392.4855 without restraints) Performing minimization step: 719. Total energy = 16396.4560 kcal/mol (16377.9946 without restraints) Performing minimization step: 720. Total energy = 16381.9886 kcal/mol (16363.5329 without restraints) Performing minimization step: 721. Total energy = 16367.5507 kcal/mol (16349.1008 without restraints) Performing minimization step: 722. Total energy = 16353.1420 kcal/mol (16334.6974 without restraints) Performing minimization step: 723. Total energy = 16338.7619 kcal/mol (16320.3228 without restraints) Performing minimization step: 724. Total energy = 16324.4112 kcal/mol (16305.9778 without restraints) Performing minimization step: 725. Total energy = 16310.0895 kcal/mol (16291.6617 without restraints) Performing minimization step: 726. Total energy = 16295.7965 kcal/mol (16277.3743 without restraints) Performing minimization step: 727. Total energy = 16281.5324 kcal/mol (16263.1157 without restraints) Performing minimization step: 728. Total energy = 16267.2976 kcal/mol (16248.8865 without restraints) Performing minimization step: 729. Total energy = 16253.0913 kcal/mol (16234.6857 without restraints) Performing minimization step: 730. Total energy = 16238.9132 kcal/mol (16220.5132 without restraints) Performing minimization step: 731. Total energy = 16224.7641 kcal/mol (16206.3697 without restraints) Performing minimization step: 732. Total energy = 16210.6427 kcal/mol (16192.2537 without restraints) Performing minimization step: 733. Total energy = 16196.5498 kcal/mol (16178.1664 without restraints) Performing minimization step: 734. Total energy = 16182.4852 kcal/mol (16164.1073 without restraints) Performing minimization step: 735. Total energy = 16168.4487 kcal/mol (16150.0762 without restraints) Performing minimization step: 736. Total energy = 16154.4404 kcal/mol (16136.0735 without restraints) Performing minimization step: 737. Total energy = 16140.4600 kcal/mol (16122.0986 without restraints) Performing minimization step: 738. Total energy = 16126.5076 kcal/mol (16108.1517 without restraints) Performing minimization step: 739. Total energy = 16112.5831 kcal/mol (16094.2327 without restraints) Performing minimization step: 740. Total energy = 16098.6864 kcal/mol (16080.3415 without restraints) Performing minimization step: 741. Total energy = 16084.8173 kcal/mol (16066.4778 without restraints) Performing minimization step: 742. Total energy = 16070.9754 kcal/mol (16052.6413 without restraints) Performing minimization step: 743. Total energy = 16057.1616 kcal/mol (16038.8331 without restraints) Performing minimization step: 744. Total energy = 16043.3751 kcal/mol (16025.0520 without restraints) Performing minimization step: 745. Total energy = 16029.6158 kcal/mol (16011.2982 without restraints) Performing minimization step: 746. Total energy = 16015.8836 kcal/mol (15997.5715 without restraints) Performing minimization step: 747. Total energy = 16002.1789 kcal/mol (15983.8722 without restraints) Performing minimization step: 748. Total energy = 15988.5007 kcal/mol (15970.1992 without restraints) Performing minimization step: 749. Total energy = 15974.8501 kcal/mol (15956.5543 without restraints) Performing minimization step: 750. Total energy = 15961.2266 kcal/mol (15942.9361 without restraints) Performing minimization step: 751. Total energy = 15947.6301 kcal/mol (15929.3451 without restraints) Performing minimization step: 752. Total energy = 15934.0600 kcal/mol (15915.7804 without restraints) Performing minimization step: 753. Total energy = 15920.5166 kcal/mol (15902.2423 without restraints) Performing minimization step: 754. Total energy = 15906.9999 kcal/mol (15888.7311 without restraints) Performing minimization step: 755. Total energy = 15893.5099 kcal/mol (15875.2465 without restraints) Performing minimization step: 756. Total energy = 15880.0467 kcal/mol (15861.7888 without restraints) Performing minimization step: 757. Total energy = 15866.6095 kcal/mol (15848.3568 without restraints) Performing minimization step: 758. Total energy = 15853.1992 kcal/mol (15834.9520 without restraints) Performing minimization step: 759. Total energy = 15839.8152 kcal/mol (15821.5733 without restraints) Performing minimization step: 760. Total energy = 15826.4575 kcal/mol (15808.2209 without restraints) Performing minimization step: 761. Total energy = 15813.1253 kcal/mol (15794.8941 without restraints) Performing minimization step: 762. Total energy = 15799.8197 kcal/mol (15781.5938 without restraints) Performing minimization step: 763. Total energy = 15786.5398 kcal/mol (15768.3193 without restraints) Performing minimization step: 764. Total energy = 15773.2859 kcal/mol (15755.0707 without restraints) Performing minimization step: 765. Total energy = 15760.0577 kcal/mol (15741.8478 without restraints) Performing minimization step: 766. Total energy = 15746.8554 kcal/mol (15728.6509 without restraints) Performing minimization step: 767. Total energy = 15733.6788 kcal/mol (15715.4797 without restraints) Performing minimization step: 768. Total energy = 15720.5275 kcal/mol (15702.3336 without restraints) Performing minimization step: 769. Total energy = 15707.4021 kcal/mol (15689.2135 without restraints) Performing minimization step: 770. Total energy = 15694.3019 kcal/mol (15676.1185 without restraints) Performing minimization step: 771. Total energy = 15681.2274 kcal/mol (15663.0495 without restraints) Performing minimization step: 772. Total energy = 15668.1783 kcal/mol (15650.0056 without restraints) Performing minimization step: 773. Total energy = 15655.1552 kcal/mol (15636.9878 without restraints) Performing minimization step: 774. Total energy = 15642.1563 kcal/mol (15623.9942 without restraints) Performing minimization step: 775. Total energy = 15629.1830 kcal/mol (15611.0263 without restraints) Performing minimization step: 776. Total energy = 15616.2344 kcal/mol (15598.0829 without restraints) Performing minimization step: 777. Total energy = 15603.3106 kcal/mol (15585.1643 without restraints) Performing minimization step: 778. Total energy = 15590.4118 kcal/mol (15572.2708 without restraints) Performing minimization step: 779. Total energy = 15577.5381 kcal/mol (15559.4025 without restraints) Performing minimization step: 780. Total energy = 15564.6895 kcal/mol (15546.5592 without restraints) Performing minimization step: 781. Total energy = 15551.8653 kcal/mol (15533.7402 without restraints) Performing minimization step: 782. Total energy = 15539.0660 kcal/mol (15520.9460 without restraints) Performing minimization step: 783. Total energy = 15526.2907 kcal/mol (15508.1760 without restraints) Performing minimization step: 784. Total energy = 15513.5400 kcal/mol (15495.4305 without restraints) Performing minimization step: 785. Total energy = 15500.8136 kcal/mol (15482.7093 without restraints) Performing minimization step: 786. Total energy = 15488.1114 kcal/mol (15470.0124 without restraints) Performing minimization step: 787. Total energy = 15475.4336 kcal/mol (15457.3397 without restraints) Performing minimization step: 788. Total energy = 15462.7799 kcal/mol (15444.6913 without restraints) Performing minimization step: 789. Total energy = 15450.1501 kcal/mol (15432.0667 without restraints) Performing minimization step: 790. Total energy = 15437.5446 kcal/mol (15419.4663 without restraints) Performing minimization step: 791. Total energy = 15424.9631 kcal/mol (15406.8900 without restraints) Performing minimization step: 792. Total energy = 15412.4057 kcal/mol (15394.3380 without restraints) Performing minimization step: 793. Total energy = 15399.8722 kcal/mol (15381.8096 without restraints) Performing minimization step: 794. Total energy = 15387.3624 kcal/mol (15369.3049 without restraints) Performing minimization step: 795. Total energy = 15374.8761 kcal/mol (15356.8238 without restraints) Performing minimization step: 796. Total energy = 15362.4138 kcal/mol (15344.3667 without restraints) Performing minimization step: 797. Total energy = 15349.9748 kcal/mol (15331.9328 without restraints) Performing minimization step: 798. Total energy = 15337.5591 kcal/mol (15319.5222 without restraints) Performing minimization step: 799. Total energy = 15325.1668 kcal/mol (15307.1351 without restraints) Performing minimization step: 800. Total energy = 15312.7980 kcal/mol (15294.7715 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 801. Total energy = 15300.4527 kcal/mol (15282.4313 without restraints) Performing minimization step: 802. Total energy = 15288.1308 kcal/mol (15270.1146 without restraints) Performing minimization step: 803. Total energy = 15275.8319 kcal/mol (15257.8208 without restraints) Performing minimization step: 804. Total energy = 15263.5565 kcal/mol (15245.5505 without restraints) Performing minimization step: 805. Total energy = 15251.3040 kcal/mol (15233.3031 without restraints) Performing minimization step: 806. Total energy = 15239.0745 kcal/mol (15221.0787 without restraints) Performing minimization step: 807. Total energy = 15226.8675 kcal/mol (15208.8769 without restraints) Performing minimization step: 808. Total energy = 15214.6836 kcal/mol (15196.6980 without restraints) Performing minimization step: 809. Total energy = 15202.5220 kcal/mol (15184.5415 without restraints) Performing minimization step: 810. Total energy = 15190.3834 kcal/mol (15172.4082 without restraints) Performing minimization step: 811. Total energy = 15178.2673 kcal/mol (15160.2972 without restraints) Performing minimization step: 812. Total energy = 15166.1739 kcal/mol (15148.2087 without restraints) Performing minimization step: 813. Total energy = 15154.1028 kcal/mol (15136.1429 without restraints) Performing minimization step: 814. Total energy = 15142.0546 kcal/mol (15124.0997 without restraints) Performing minimization step: 815. Total energy = 15130.0284 kcal/mol (15112.0786 without restraints) Performing minimization step: 816. Total energy = 15118.0248 kcal/mol (15100.0799 without restraints) Performing minimization step: 817. Total energy = 15106.0430 kcal/mol (15088.1031 without restraints) Performing minimization step: 818. Total energy = 15094.0836 kcal/mol (15076.1488 without restraints) Performing minimization step: 819. Total energy = 15082.1464 kcal/mol (15064.2168 without restraints) Performing minimization step: 820. Total energy = 15070.2310 kcal/mol (15052.3064 without restraints) Performing minimization step: 821. Total energy = 15058.3378 kcal/mol (15040.4183 without restraints) Performing minimization step: 822. Total energy = 15046.4664 kcal/mol (15028.5520 without restraints) Performing minimization step: 823. Total energy = 15034.6170 kcal/mol (15016.7076 without restraints) Performing minimization step: 824. Total energy = 15022.7896 kcal/mol (15004.8852 without restraints) Performing minimization step: 825. Total energy = 15010.9835 kcal/mol (14993.0842 without restraints) Performing minimization step: 826. Total energy = 14999.1992 kcal/mol (14981.3048 without restraints) Performing minimization step: 827. Total energy = 14987.4366 kcal/mol (14969.5473 without restraints) Performing minimization step: 828. Total energy = 14975.6956 kcal/mol (14957.8114 without restraints) Performing minimization step: 829. Total energy = 14963.9761 kcal/mol (14946.0969 without restraints) Performing minimization step: 830. Total energy = 14952.2779 kcal/mol (14934.4036 without restraints) Performing minimization step: 831. Total energy = 14940.6011 kcal/mol (14922.7319 without restraints) Performing minimization step: 832. Total energy = 14928.9457 kcal/mol (14911.0815 without restraints) Performing minimization step: 833. Total energy = 14917.3114 kcal/mol (14899.4521 without restraints) Performing minimization step: 834. Total energy = 14905.6983 kcal/mol (14887.8439 without restraints) Performing minimization step: 835. Total energy = 14894.1062 kcal/mol (14876.2571 without restraints) Performing minimization step: 836. Total energy = 14882.5353 kcal/mol (14864.6911 without restraints) Performing minimization step: 837. Total energy = 14870.9856 kcal/mol (14853.1463 without restraints) Performing minimization step: 838. Total energy = 14859.4563 kcal/mol (14841.6221 without restraints) Performing minimization step: 839. Total energy = 14847.9482 kcal/mol (14830.1188 without restraints) Performing minimization step: 840. Total energy = 14836.4607 kcal/mol (14818.6363 without restraints) Performing minimization step: 841. Total energy = 14824.9946 kcal/mol (14807.1753 without restraints) Performing minimization step: 842. Total energy = 14813.5491 kcal/mol (14795.7347 without restraints) Performing minimization step: 843. Total energy = 14802.1241 kcal/mol (14784.3147 without restraints) Performing minimization step: 844. Total energy = 14790.7196 kcal/mol (14772.9150 without restraints) Performing minimization step: 845. Total energy = 14779.3355 kcal/mol (14761.5360 without restraints) Performing minimization step: 846. Total energy = 14767.9719 kcal/mol (14750.1771 without restraints) Performing minimization step: 847. Total energy = 14756.6282 kcal/mol (14738.8384 without restraints) Performing minimization step: 848. Total energy = 14745.3055 kcal/mol (14727.5207 without restraints) Performing minimization step: 849. Total energy = 14734.0031 kcal/mol (14716.2232 without restraints) Performing minimization step: 850. Total energy = 14722.7209 kcal/mol (14704.9460 without restraints) Performing minimization step: 851. Total energy = 14711.4588 kcal/mol (14693.6888 without restraints) Performing minimization step: 852. Total energy = 14700.2168 kcal/mol (14682.4516 without restraints) Performing minimization step: 853. Total energy = 14688.9945 kcal/mol (14671.2341 without restraints) Performing minimization step: 854. Total energy = 14677.7921 kcal/mol (14660.0368 without restraints) Performing minimization step: 855. Total energy = 14666.6110 kcal/mol (14648.8606 without restraints) Performing minimization step: 856. Total energy = 14655.4487 kcal/mol (14637.7030 without restraints) Performing minimization step: 857. Total energy = 14644.3059 kcal/mol (14626.5653 without restraints) Performing minimization step: 858. Total energy = 14633.1832 kcal/mol (14615.4475 without restraints) Performing minimization step: 859. Total energy = 14622.0801 kcal/mol (14604.3494 without restraints) Performing minimization step: 860. Total energy = 14610.9967 kcal/mol (14593.2708 without restraints) Performing minimization step: 861. Total energy = 14599.9331 kcal/mol (14582.2120 without restraints) Performing minimization step: 862. Total energy = 14588.8886 kcal/mol (14571.1723 without restraints) Performing minimization step: 863. Total energy = 14577.8642 kcal/mol (14560.1529 without restraints) Performing minimization step: 864. Total energy = 14566.8586 kcal/mol (14549.1523 without restraints) Performing minimization step: 865. Total energy = 14555.8726 kcal/mol (14538.1711 without restraints) Performing minimization step: 866. Total energy = 14544.9059 kcal/mol (14527.2091 without restraints) Performing minimization step: 867. Total energy = 14533.9583 kcal/mol (14516.2665 without restraints) Performing minimization step: 868. Total energy = 14523.0305 kcal/mol (14505.3437 without restraints) Performing minimization step: 869. Total energy = 14512.1219 kcal/mol (14494.4397 without restraints) Performing minimization step: 870. Total energy = 14501.2325 kcal/mol (14483.5551 without restraints) Performing minimization step: 871. Total energy = 14490.3617 kcal/mol (14472.6893 without restraints) Performing minimization step: 872. Total energy = 14479.5097 kcal/mol (14461.8421 without restraints) Performing minimization step: 873. Total energy = 14468.6769 kcal/mol (14451.0142 without restraints) Performing minimization step: 874. Total energy = 14457.8629 kcal/mol (14440.2050 without restraints) Performing minimization step: 875. Total energy = 14447.0683 kcal/mol (14429.4153 without restraints) Performing minimization step: 876. Total energy = 14436.2919 kcal/mol (14418.6435 without restraints) Performing minimization step: 877. Total energy = 14425.5339 kcal/mol (14407.8903 without restraints) Performing minimization step: 878. Total energy = 14414.7942 kcal/mol (14397.1555 without restraints) Performing minimization step: 879. Total energy = 14404.0735 kcal/mol (14386.4396 without restraints) Performing minimization step: 880. Total energy = 14393.3716 kcal/mol (14375.7425 without restraints) Performing minimization step: 881. Total energy = 14382.6881 kcal/mol (14365.0639 without restraints) Performing minimization step: 882. Total energy = 14372.0234 kcal/mol (14354.4040 without restraints) Performing minimization step: 883. Total energy = 14361.3769 kcal/mol (14343.7623 without restraints) Performing minimization step: 884. Total energy = 14350.7489 kcal/mol (14333.1391 without restraints) Performing minimization step: 885. Total energy = 14340.1390 kcal/mol (14322.5340 without restraints) Performing minimization step: 886. Total energy = 14329.5471 kcal/mol (14311.9468 without restraints) Performing minimization step: 887. Total energy = 14318.9735 kcal/mol (14301.3781 without restraints) Performing minimization step: 888. Total energy = 14308.4185 kcal/mol (14290.8279 without restraints) Performing minimization step: 889. Total energy = 14297.8814 kcal/mol (14280.2956 without restraints) Performing minimization step: 890. Total energy = 14287.3620 kcal/mol (14269.7808 without restraints) Performing minimization step: 891. Total energy = 14276.8604 kcal/mol (14259.2840 without restraints) Performing minimization step: 892. Total energy = 14266.3763 kcal/mol (14248.8048 without restraints) Performing minimization step: 893. Total energy = 14255.9110 kcal/mol (14238.3441 without restraints) Performing minimization step: 894. Total energy = 14245.4633 kcal/mol (14227.9015 without restraints) Performing minimization step: 895. Total energy = 14235.0335 kcal/mol (14217.4763 without restraints) Performing minimization step: 896. Total energy = 14224.6209 kcal/mol (14207.0683 without restraints) Performing minimization step: 897. Total energy = 14214.2263 kcal/mol (14196.6785 without restraints) Performing minimization step: 898. Total energy = 14203.8493 kcal/mol (14186.3063 without restraints) Performing minimization step: 899. Total energy = 14193.4898 kcal/mol (14175.9515 without restraints) Performing minimization step: 900. Total energy = 14183.1481 kcal/mol (14165.6146 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 901. Total energy = 14172.8239 kcal/mol (14155.2953 without restraints) Performing minimization step: 902. Total energy = 14162.5169 kcal/mol (14144.9929 without restraints) Performing minimization step: 903. Total energy = 14152.2276 kcal/mol (14134.7083 without restraints) Performing minimization step: 904. Total energy = 14141.9556 kcal/mol (14124.4411 without restraints) Performing minimization step: 905. Total energy = 14131.7003 kcal/mol (14114.1904 without restraints) Performing minimization step: 906. Total energy = 14121.4623 kcal/mol (14103.9571 without restraints) Performing minimization step: 907. Total energy = 14111.2419 kcal/mol (14093.7415 without restraints) Performing minimization step: 908. Total energy = 14101.0385 kcal/mol (14083.5430 without restraints) Performing minimization step: 909. Total energy = 14090.8527 kcal/mol (14073.3618 without restraints) Performing minimization step: 910. Total energy = 14080.6835 kcal/mol (14063.1972 without restraints) Performing minimization step: 911. Total energy = 14070.5317 kcal/mol (14053.0502 without restraints) Performing minimization step: 912. Total energy = 14060.3959 kcal/mol (14042.9191 without restraints) Performing minimization step: 913. Total energy = 14050.2774 kcal/mol (14032.8053 without restraints) Performing minimization step: 914. Total energy = 14040.1758 kcal/mol (14022.7084 without restraints) Performing minimization step: 915. Total energy = 14030.0912 kcal/mol (14012.6287 without restraints) Performing minimization step: 916. Total energy = 14020.0230 kcal/mol (14002.5650 without restraints) Performing minimization step: 917. Total energy = 14009.9718 kcal/mol (13992.5185 without restraints) Performing minimization step: 918. Total energy = 13999.9371 kcal/mol (13982.4884 without restraints) Performing minimization step: 919. Total energy = 13989.9188 kcal/mol (13972.4748 without restraints) Performing minimization step: 920. Total energy = 13979.9174 kcal/mol (13962.4781 without restraints) Performing minimization step: 921. Total energy = 13969.9327 kcal/mol (13952.4981 without restraints) Performing minimization step: 922. Total energy = 13959.9643 kcal/mol (13942.5344 without restraints) Performing minimization step: 923. Total energy = 13950.0121 kcal/mol (13932.5869 without restraints) Performing minimization step: 924. Total energy = 13940.0763 kcal/mol (13922.6557 without restraints) Performing minimization step: 925. Total energy = 13930.1566 kcal/mol (13912.7407 without restraints) Performing minimization step: 926. Total energy = 13920.2538 kcal/mol (13902.8426 without restraints) Performing minimization step: 927. Total energy = 13910.3676 kcal/mol (13892.9611 without restraints) Performing minimization step: 928. Total energy = 13900.4966 kcal/mol (13883.0947 without restraints) Performing minimization step: 929. Total energy = 13890.6419 kcal/mol (13873.2447 without restraints) Performing minimization step: 930. Total energy = 13880.8035 kcal/mol (13863.4109 without restraints) Performing minimization step: 931. Total energy = 13870.9811 kcal/mol (13853.5932 without restraints) Performing minimization step: 932. Total energy = 13861.1743 kcal/mol (13843.7910 without restraints) Performing minimization step: 933. Total energy = 13851.3838 kcal/mol (13834.0050 without restraints) Performing minimization step: 934. Total energy = 13841.6086 kcal/mol (13824.2346 without restraints) Performing minimization step: 935. Total energy = 13831.8502 kcal/mol (13814.4808 without restraints) Performing minimization step: 936. Total energy = 13822.1075 kcal/mol (13804.7429 without restraints) Performing minimization step: 937. Total energy = 13812.3815 kcal/mol (13795.0214 without restraints) Performing minimization step: 938. Total energy = 13802.6703 kcal/mol (13785.3148 without restraints) Performing minimization step: 939. Total energy = 13792.9748 kcal/mol (13775.6239 without restraints) Performing minimization step: 940. Total energy = 13783.2951 kcal/mol (13765.9488 without restraints) Performing minimization step: 941. Total energy = 13773.6313 kcal/mol (13756.2896 without restraints) Performing minimization step: 942. Total energy = 13763.9827 kcal/mol (13746.6458 without restraints) Performing minimization step: 943. Total energy = 13754.3496 kcal/mol (13737.0171 without restraints) Performing minimization step: 944. Total energy = 13744.7315 kcal/mol (13727.4038 without restraints) Performing minimization step: 945. Total energy = 13735.1294 kcal/mol (13717.8063 without restraints) Performing minimization step: 946. Total energy = 13725.5426 kcal/mol (13708.2241 without restraints) Performing minimization step: 947. Total energy = 13715.9709 kcal/mol (13698.6569 without restraints) Performing minimization step: 948. Total energy = 13706.4147 kcal/mol (13689.1054 without restraints) Performing minimization step: 949. Total energy = 13696.8739 kcal/mol (13679.5691 without restraints) Performing minimization step: 950. Total energy = 13687.3482 kcal/mol (13670.0481 without restraints) Performing minimization step: 951. Total energy = 13677.8379 kcal/mol (13660.5424 without restraints) Performing minimization step: 952. Total energy = 13668.3423 kcal/mol (13651.0513 without restraints) Performing minimization step: 953. Total energy = 13658.8621 kcal/mol (13641.5758 without restraints) Performing minimization step: 954. Total energy = 13649.3972 kcal/mol (13632.1155 without restraints) Performing minimization step: 955. Total energy = 13639.9475 kcal/mol (13622.6705 without restraints) Performing minimization step: 956. Total energy = 13630.5127 kcal/mol (13613.2401 without restraints) Performing minimization step: 957. Total energy = 13621.0929 kcal/mol (13603.8249 without restraints) Performing minimization step: 958. Total energy = 13611.6874 kcal/mol (13594.4241 without restraints) Performing minimization step: 959. Total energy = 13602.2977 kcal/mol (13585.0389 without restraints) Performing minimization step: 960. Total energy = 13592.9226 kcal/mol (13575.6684 without restraints) Performing minimization step: 961. Total energy = 13583.5621 kcal/mol (13566.3124 without restraints) Performing minimization step: 962. Total energy = 13574.2162 kcal/mol (13556.9711 without restraints) Performing minimization step: 963. Total energy = 13564.8851 kcal/mol (13547.6446 without restraints) Performing minimization step: 964. Total energy = 13555.5685 kcal/mol (13538.3325 without restraints) Performing minimization step: 965. Total energy = 13546.2668 kcal/mol (13529.0354 without restraints) Performing minimization step: 966. Total energy = 13536.9798 kcal/mol (13519.7530 without restraints) Performing minimization step: 967. Total energy = 13527.7071 kcal/mol (13510.4849 without restraints) Performing minimization step: 968. Total energy = 13518.4485 kcal/mol (13501.2307 without restraints) Performing minimization step: 969. Total energy = 13509.2049 kcal/mol (13491.9917 without restraints) Performing minimization step: 970. Total energy = 13499.9757 kcal/mol (13482.7671 without restraints) Performing minimization step: 971. Total energy = 13490.7612 kcal/mol (13473.5572 without restraints) Performing minimization step: 972. Total energy = 13481.5611 kcal/mol (13464.3616 without restraints) Performing minimization step: 973. Total energy = 13472.3749 kcal/mol (13455.1800 without restraints) Performing minimization step: 974. Total energy = 13463.2035 kcal/mol (13446.0131 without restraints) Performing minimization step: 975. Total energy = 13454.0464 kcal/mol (13436.8607 without restraints) Performing minimization step: 976. Total energy = 13444.9032 kcal/mol (13427.7219 without restraints) Performing minimization step: 977. Total energy = 13435.7741 kcal/mol (13418.5973 without restraints) Performing minimization step: 978. Total energy = 13426.6591 kcal/mol (13409.4868 without restraints) Performing minimization step: 979. Total energy = 13417.5584 kcal/mol (13400.3907 without restraints) Performing minimization step: 980. Total energy = 13408.4713 kcal/mol (13391.3081 without restraints) Performing minimization step: 981. Total energy = 13399.3985 kcal/mol (13382.2399 without restraints) Performing minimization step: 982. Total energy = 13390.3398 kcal/mol (13373.1858 without restraints) Performing minimization step: 983. Total energy = 13381.2950 kcal/mol (13364.1454 without restraints) Performing minimization step: 984. Total energy = 13372.2638 kcal/mol (13355.1188 without restraints) Performing minimization step: 985. Total energy = 13363.2468 kcal/mol (13346.1063 without restraints) Performing minimization step: 986. Total energy = 13354.2434 kcal/mol (13337.1074 without restraints) Performing minimization step: 987. Total energy = 13345.2531 kcal/mol (13328.1216 without restraints) Performing minimization step: 988. Total energy = 13336.2773 kcal/mol (13319.1502 without restraints) Performing minimization step: 989. Total energy = 13327.3158 kcal/mol (13310.1933 without restraints) Performing minimization step: 990. Total energy = 13318.3674 kcal/mol (13301.2494 without restraints) Performing minimization step: 991. Total energy = 13309.4329 kcal/mol (13292.3194 without restraints) Performing minimization step: 992. Total energy = 13300.5119 kcal/mol (13283.4029 without restraints) Performing minimization step: 993. Total energy = 13291.6047 kcal/mol (13274.5002 without restraints) Performing minimization step: 994. Total energy = 13282.7108 kcal/mol (13265.6109 without restraints) Performing minimization step: 995. Total energy = 13273.8307 kcal/mol (13256.7352 without restraints) Performing minimization step: 996. Total energy = 13264.9640 kcal/mol (13247.8729 without restraints) Performing minimization step: 997. Total energy = 13256.1103 kcal/mol (13239.0238 without restraints) Performing minimization step: 998. Total energy = 13247.2702 kcal/mol (13230.1882 without restraints) Performing minimization step: 999. Total energy = 13238.4433 kcal/mol (13221.3658 without restraints) Performing minimization step: 1000. Total energy = 13229.6302 kcal/mol (13212.5572 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1001. Total energy = 13220.8304 kcal/mol (13203.7619 without restraints) Performing minimization step: 1002. Total energy = 13212.0438 kcal/mol (13194.9796 without restraints) Performing minimization step: 1003. Total energy = 13203.2708 kcal/mol (13186.2113 without restraints) Performing minimization step: 1004. Total energy = 13194.5109 kcal/mol (13177.4558 without restraints) Performing minimization step: 1005. Total energy = 13185.7643 kcal/mol (13168.7136 without restraints) Performing minimization step: 1006. Total energy = 13177.0304 kcal/mol (13159.9843 without restraints) Performing minimization step: 1007. Total energy = 13168.3098 kcal/mol (13151.2682 without restraints) Performing minimization step: 1008. Total energy = 13159.6023 kcal/mol (13142.5651 without restraints) Performing minimization step: 1009. Total energy = 13150.9078 kcal/mol (13133.8750 without restraints) Performing minimization step: 1010. Total energy = 13142.2261 kcal/mol (13125.1977 without restraints) Performing minimization step: 1011. Total energy = 13133.5572 kcal/mol (13116.5335 without restraints) Performing minimization step: 1012. Total energy = 13124.9018 kcal/mol (13107.8829 without restraints) Performing minimization step: 1013. Total energy = 13116.2594 kcal/mol (13099.2444 without restraints) Performing minimization step: 1014. Total energy = 13107.6296 kcal/mol (13090.6192 without restraints) Performing minimization step: 1015. Total energy = 13099.0127 kcal/mol (13082.0068 without restraints) Performing minimization step: 1016. Total energy = 13090.4091 kcal/mol (13073.4079 without restraints) Performing minimization step: 1017. Total energy = 13081.8183 kcal/mol (13064.8214 without restraints) Performing minimization step: 1018. Total energy = 13073.2396 kcal/mol (13056.2470 without restraints) Performing minimization step: 1019. Total energy = 13064.6732 kcal/mol (13047.6851 without restraints) Performing minimization step: 1020. Total energy = 13056.1199 kcal/mol (13039.1362 without restraints) Performing minimization step: 1021. Total energy = 13047.5796 kcal/mol (13030.6004 without restraints) Performing minimization step: 1022. Total energy = 13039.0516 kcal/mol (13022.0768 without restraints) Performing minimization step: 1023. Total energy = 13030.5366 kcal/mol (13013.5666 without restraints) Performing minimization step: 1024. Total energy = 13022.0345 kcal/mol (13005.0686 without restraints) Performing minimization step: 1025. Total energy = 13013.5445 kcal/mol (12996.5830 without restraints) Performing minimization step: 1026. Total energy = 13005.0668 kcal/mol (12988.1098 without restraints) Performing minimization step: 1027. Total energy = 12996.6015 kcal/mol (12979.6489 without restraints) Performing minimization step: 1028. Total energy = 12988.1485 kcal/mol (12971.2004 without restraints) Performing minimization step: 1029. Total energy = 12979.7079 kcal/mol (12962.7642 without restraints) Performing minimization step: 1030. Total energy = 12971.2797 kcal/mol (12954.3405 without restraints) Performing minimization step: 1031. Total energy = 12962.8641 kcal/mol (12945.9293 without restraints) Performing minimization step: 1032. Total energy = 12954.4606 kcal/mol (12937.5302 without restraints) Performing minimization step: 1033. Total energy = 12946.0690 kcal/mol (12929.1431 without restraints) Performing minimization step: 1034. Total energy = 12937.6905 kcal/mol (12920.7690 without restraints) Performing minimization step: 1035. Total energy = 12929.3243 kcal/mol (12912.4072 without restraints) Performing minimization step: 1036. Total energy = 12920.9700 kcal/mol (12904.0573 without restraints) Performing minimization step: 1037. Total energy = 12912.6277 kcal/mol (12895.7195 without restraints) Performing minimization step: 1038. Total energy = 12904.2978 kcal/mol (12887.3939 without restraints) Performing minimization step: 1039. Total energy = 12895.9795 kcal/mol (12879.0800 without restraints) Performing minimization step: 1040. Total energy = 12887.6735 kcal/mol (12870.7786 without restraints) Performing minimization step: 1041. Total energy = 12879.3798 kcal/mol (12862.4892 without restraints) Performing minimization step: 1042. Total energy = 12871.0980 kcal/mol (12854.2119 without restraints) Performing minimization step: 1043. Total energy = 12862.8279 kcal/mol (12845.9462 without restraints) Performing minimization step: 1044. Total energy = 12854.5699 kcal/mol (12837.6926 without restraints) Performing minimization step: 1045. Total energy = 12846.3242 kcal/mol (12829.4513 without restraints) Performing minimization step: 1046. Total energy = 12838.0901 kcal/mol (12821.2216 without restraints) Performing minimization step: 1047. Total energy = 12829.8680 kcal/mol (12813.0039 without restraints) Performing minimization step: 1048. Total energy = 12821.6578 kcal/mol (12804.7981 without restraints) Performing minimization step: 1049. Total energy = 12813.4592 kcal/mol (12796.6039 without restraints) Performing minimization step: 1050. Total energy = 12805.2727 kcal/mol (12788.4218 without restraints) Performing minimization step: 1051. Total energy = 12797.0978 kcal/mol (12780.2513 without restraints) Performing minimization step: 1052. Total energy = 12788.9349 kcal/mol (12772.0930 without restraints) Performing minimization step: 1053. Total energy = 12780.7836 kcal/mol (12763.9459 without restraints) Performing minimization step: 1054. Total energy = 12772.6439 kcal/mol (12755.8107 without restraints) Performing minimization step: 1055. Total energy = 12764.5160 kcal/mol (12747.6871 without restraints) Performing minimization step: 1056. Total energy = 12756.3998 kcal/mol (12739.5753 without restraints) Performing minimization step: 1057. Total energy = 12748.2951 kcal/mol (12731.4749 without restraints) Performing minimization step: 1058. Total energy = 12740.2021 kcal/mol (12723.3864 without restraints) Performing minimization step: 1059. Total energy = 12732.1204 kcal/mol (12715.3089 without restraints) Performing minimization step: 1060. Total energy = 12724.0507 kcal/mol (12707.2438 without restraints) Performing minimization step: 1061. Total energy = 12715.9921 kcal/mol (12699.1895 without restraints) Performing minimization step: 1062. Total energy = 12707.9454 kcal/mol (12691.1472 without restraints) Performing minimization step: 1063. Total energy = 12699.9097 kcal/mol (12683.1159 without restraints) Performing minimization step: 1064. Total energy = 12691.8855 kcal/mol (12675.0961 without restraints) Performing minimization step: 1065. Total energy = 12683.8727 kcal/mol (12667.0875 without restraints) Performing minimization step: 1066. Total energy = 12675.8707 kcal/mol (12659.0900 without restraints) Performing minimization step: 1067. Total energy = 12667.8804 kcal/mol (12651.1041 without restraints) Performing minimization step: 1068. Total energy = 12659.9014 kcal/mol (12643.1295 without restraints) Performing minimization step: 1069. Total energy = 12651.9338 kcal/mol (12635.1662 without restraints) Performing minimization step: 1070. Total energy = 12643.9777 kcal/mol (12627.2145 without restraints) Performing minimization step: 1071. Total energy = 12636.0327 kcal/mol (12619.2738 without restraints) Performing minimization step: 1072. Total energy = 12628.0987 kcal/mol (12611.3441 without restraints) Performing minimization step: 1073. Total energy = 12620.1755 kcal/mol (12603.4255 without restraints) Performing minimization step: 1074. Total energy = 12612.2639 kcal/mol (12595.5182 without restraints) Performing minimization step: 1075. Total energy = 12604.3637 kcal/mol (12587.6224 without restraints) Performing minimization step: 1076. Total energy = 12596.4744 kcal/mol (12579.7374 without restraints) Performing minimization step: 1077. Total energy = 12588.5961 kcal/mol (12571.8637 without restraints) Performing minimization step: 1078. Total energy = 12580.7290 kcal/mol (12564.0008 without restraints) Performing minimization step: 1079. Total energy = 12572.8728 kcal/mol (12556.1490 without restraints) Performing minimization step: 1080. Total energy = 12565.0276 kcal/mol (12548.3081 without restraints) Performing minimization step: 1081. Total energy = 12557.1935 kcal/mol (12540.4784 without restraints) Performing minimization step: 1082. Total energy = 12549.3701 kcal/mol (12532.6592 without restraints) Performing minimization step: 1083. Total energy = 12541.5577 kcal/mol (12524.8514 without restraints) Performing minimization step: 1084. Total energy = 12533.7563 kcal/mol (12517.0542 without restraints) Performing minimization step: 1085. Total energy = 12525.9660 kcal/mol (12509.2683 without restraints) Performing minimization step: 1086. Total energy = 12518.1858 kcal/mol (12501.4922 without restraints) Performing minimization step: 1087. Total energy = 12510.4166 kcal/mol (12493.7276 without restraints) Performing minimization step: 1088. Total energy = 12502.6586 kcal/mol (12485.9740 without restraints) Performing minimization step: 1089. Total energy = 12494.9115 kcal/mol (12478.2313 without restraints) Performing minimization step: 1090. Total energy = 12487.1746 kcal/mol (12470.4986 without restraints) Performing minimization step: 1091. Total energy = 12479.4488 kcal/mol (12462.7771 without restraints) Performing minimization step: 1092. Total energy = 12471.7336 kcal/mol (12455.0663 without restraints) Performing minimization step: 1093. Total energy = 12464.0291 kcal/mol (12447.3662 without restraints) Performing minimization step: 1094. Total energy = 12456.3356 kcal/mol (12439.6770 without restraints) Performing minimization step: 1095. Total energy = 12448.6524 kcal/mol (12431.9982 without restraints) Performing minimization step: 1096. Total energy = 12440.9799 kcal/mol (12424.3300 without restraints) Performing minimization step: 1097. Total energy = 12433.3175 kcal/mol (12416.6719 without restraints) Performing minimization step: 1098. Total energy = 12425.6663 kcal/mol (12409.0250 without restraints) Performing minimization step: 1099. Total energy = 12418.0252 kcal/mol (12401.3883 without restraints) Performing minimization step: 1100. Total energy = 12410.3956 kcal/mol (12393.7632 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1101. Total energy = 12402.7759 kcal/mol (12386.1477 without restraints) Performing minimization step: 1102. Total energy = 12395.1670 kcal/mol (12378.5432 without restraints) Performing minimization step: 1103. Total energy = 12387.5686 kcal/mol (12370.9492 without restraints) Performing minimization step: 1104. Total energy = 12379.9802 kcal/mol (12363.3649 without restraints) Performing minimization step: 1105. Total energy = 12372.4021 kcal/mol (12355.7912 without restraints) Performing minimization step: 1106. Total energy = 12364.8351 kcal/mol (12348.2285 without restraints) Performing minimization step: 1107. Total energy = 12357.2780 kcal/mol (12340.6757 without restraints) Performing minimization step: 1108. Total energy = 12349.7315 kcal/mol (12333.1335 without restraints) Performing minimization step: 1109. Total energy = 12342.1947 kcal/mol (12325.6010 without restraints) Performing minimization step: 1110. Total energy = 12334.6684 kcal/mol (12318.0792 without restraints) Performing minimization step: 1111. Total energy = 12327.1530 kcal/mol (12310.5680 without restraints) Performing minimization step: 1112. Total energy = 12319.6474 kcal/mol (12303.0667 without restraints) Performing minimization step: 1113. Total energy = 12312.1510 kcal/mol (12295.5747 without restraints) Performing minimization step: 1114. Total energy = 12304.6658 kcal/mol (12288.0937 without restraints) Performing minimization step: 1115. Total energy = 12297.1905 kcal/mol (12280.6228 without restraints) Performing minimization step: 1116. Total energy = 12289.7257 kcal/mol (12273.1625 without restraints) Performing minimization step: 1117. Total energy = 12282.2704 kcal/mol (12265.7114 without restraints) Performing minimization step: 1118. Total energy = 12274.8257 kcal/mol (12258.2709 without restraints) Performing minimization step: 1119. Total energy = 12267.3906 kcal/mol (12250.8401 without restraints) Performing minimization step: 1120. Total energy = 12259.9660 kcal/mol (12243.4199 without restraints) Performing minimization step: 1121. Total energy = 12252.5511 kcal/mol (12236.0092 without restraints) Performing minimization step: 1122. Total energy = 12245.1464 kcal/mol (12228.6089 without restraints) Performing minimization step: 1123. Total energy = 12237.7519 kcal/mol (12221.2187 without restraints) Performing minimization step: 1124. Total energy = 12230.3674 kcal/mol (12213.8385 without restraints) Performing minimization step: 1125. Total energy = 12222.9929 kcal/mol (12206.4683 without restraints) Performing minimization step: 1126. Total energy = 12215.6281 kcal/mol (12199.1079 without restraints) Performing minimization step: 1127. Total energy = 12208.2739 kcal/mol (12191.7580 without restraints) Performing minimization step: 1128. Total energy = 12200.9294 kcal/mol (12184.4177 without restraints) Performing minimization step: 1129. Total energy = 12193.5948 kcal/mol (12177.0875 without restraints) Performing minimization step: 1130. Total energy = 12186.2697 kcal/mol (12169.7666 without restraints) Performing minimization step: 1131. Total energy = 12178.9544 kcal/mol (12162.4556 without restraints) Performing minimization step: 1132. Total energy = 12171.6490 kcal/mol (12155.1546 without restraints) Performing minimization step: 1133. Total energy = 12164.3533 kcal/mol (12147.8631 without restraints) Performing minimization step: 1134. Total energy = 12157.0674 kcal/mol (12140.5815 without restraints) Performing minimization step: 1135. Total energy = 12149.7916 kcal/mol (12133.3099 without restraints) Performing minimization step: 1136. Total energy = 12142.5255 kcal/mol (12126.0483 without restraints) Performing minimization step: 1137. Total energy = 12135.2690 kcal/mol (12118.7959 without restraints) Performing minimization step: 1138. Total energy = 12128.0218 kcal/mol (12111.5530 without restraints) Performing minimization step: 1139. Total energy = 12120.7845 kcal/mol (12104.3202 without restraints) Performing minimization step: 1140. Total energy = 12113.5569 kcal/mol (12097.0969 without restraints) Performing minimization step: 1141. Total energy = 12106.3390 kcal/mol (12089.8832 without restraints) Performing minimization step: 1142. Total energy = 12099.1307 kcal/mol (12082.6792 without restraints) Performing minimization step: 1143. Total energy = 12091.9323 kcal/mol (12075.4851 without restraints) Performing minimization step: 1144. Total energy = 12084.7433 kcal/mol (12068.3004 without restraints) Performing minimization step: 1145. Total energy = 12077.5633 kcal/mol (12061.1245 without restraints) Performing minimization step: 1146. Total energy = 12070.3932 kcal/mol (12053.9587 without restraints) Performing minimization step: 1147. Total energy = 12063.2318 kcal/mol (12046.8017 without restraints) Performing minimization step: 1148. Total energy = 12056.0809 kcal/mol (12039.6551 without restraints) Performing minimization step: 1149. Total energy = 12048.9401 kcal/mol (12032.5185 without restraints) Performing minimization step: 1150. Total energy = 12041.8084 kcal/mol (12025.3912 without restraints) Performing minimization step: 1151. Total energy = 12034.6861 kcal/mol (12018.2732 without restraints) Performing minimization step: 1152. Total energy = 12027.5730 kcal/mol (12011.1644 without restraints) Performing minimization step: 1153. Total energy = 12020.4700 kcal/mol (12004.0654 without restraints) Performing minimization step: 1154. Total energy = 12013.3762 kcal/mol (11996.9761 without restraints) Performing minimization step: 1155. Total energy = 12006.2915 kcal/mol (11989.8957 without restraints) Performing minimization step: 1156. Total energy = 11999.2161 kcal/mol (11982.8245 without restraints) Performing minimization step: 1157. Total energy = 11992.1499 kcal/mol (11975.7627 without restraints) Performing minimization step: 1158. Total energy = 11985.0925 kcal/mol (11968.7095 without restraints) Performing minimization step: 1159. Total energy = 11978.0452 kcal/mol (11961.6663 without restraints) Performing minimization step: 1160. Total energy = 11971.0067 kcal/mol (11954.6322 without restraints) Performing minimization step: 1161. Total energy = 11963.9778 kcal/mol (11947.6077 without restraints) Performing minimization step: 1162. Total energy = 11956.9584 kcal/mol (11940.5925 without restraints) Performing minimization step: 1163. Total energy = 11949.9485 kcal/mol (11933.5867 without restraints) Performing minimization step: 1164. Total energy = 11942.9469 kcal/mol (11926.5895 without restraints) Performing minimization step: 1165. Total energy = 11935.9546 kcal/mol (11919.6015 without restraints) Performing minimization step: 1166. Total energy = 11928.9715 kcal/mol (11912.6227 without restraints) Performing minimization step: 1167. Total energy = 11921.9983 kcal/mol (11905.6537 without restraints) Performing minimization step: 1168. Total energy = 11915.0337 kcal/mol (11898.6934 without restraints) Performing minimization step: 1169. Total energy = 11908.0780 kcal/mol (11891.7418 without restraints) Performing minimization step: 1170. Total energy = 11901.1316 kcal/mol (11884.7999 without restraints) Performing minimization step: 1171. Total energy = 11894.1940 kcal/mol (11877.8663 without restraints) Performing minimization step: 1172. Total energy = 11887.2651 kcal/mol (11870.9419 without restraints) Performing minimization step: 1173. Total energy = 11880.3464 kcal/mol (11864.0275 without restraints) Performing minimization step: 1174. Total energy = 11873.4365 kcal/mol (11857.1215 without restraints) Performing minimization step: 1175. Total energy = 11866.5351 kcal/mol (11850.2246 without restraints) Performing minimization step: 1176. Total energy = 11859.6431 kcal/mol (11843.3369 without restraints) Performing minimization step: 1177. Total energy = 11852.7596 kcal/mol (11836.4576 without restraints) Performing minimization step: 1178. Total energy = 11845.8851 kcal/mol (11829.5874 without restraints) Performing minimization step: 1179. Total energy = 11839.0203 kcal/mol (11822.7268 without restraints) Performing minimization step: 1180. Total energy = 11832.1642 kcal/mol (11815.8749 without restraints) Performing minimization step: 1181. Total energy = 11825.3167 kcal/mol (11809.0317 without restraints) Performing minimization step: 1182. Total energy = 11818.4780 kcal/mol (11802.1973 without restraints) Performing minimization step: 1183. Total energy = 11811.6483 kcal/mol (11795.3719 without restraints) Performing minimization step: 1184. Total energy = 11804.8272 kcal/mol (11788.5548 without restraints) Performing minimization step: 1185. Total energy = 11798.0149 kcal/mol (11781.7469 without restraints) Performing minimization step: 1186. Total energy = 11791.2117 kcal/mol (11774.9480 without restraints) Performing minimization step: 1187. Total energy = 11784.4171 kcal/mol (11768.1576 without restraints) Performing minimization step: 1188. Total energy = 11777.6315 kcal/mol (11761.3763 without restraints) Performing minimization step: 1189. Total energy = 11770.8551 kcal/mol (11754.6041 without restraints) Performing minimization step: 1190. Total energy = 11764.0869 kcal/mol (11747.8402 without restraints) Performing minimization step: 1191. Total energy = 11757.3276 kcal/mol (11741.0851 without restraints) Performing minimization step: 1192. Total energy = 11750.5770 kcal/mol (11734.3387 without restraints) Performing minimization step: 1193. Total energy = 11743.8350 kcal/mol (11727.6010 without restraints) Performing minimization step: 1194. Total energy = 11737.1022 kcal/mol (11720.8724 without restraints) Performing minimization step: 1195. Total energy = 11730.3777 kcal/mol (11714.1522 without restraints) Performing minimization step: 1196. Total energy = 11723.6619 kcal/mol (11707.4407 without restraints) Performing minimization step: 1197. Total energy = 11716.9548 kcal/mol (11700.7377 without restraints) Performing minimization step: 1198. Total energy = 11710.2562 kcal/mol (11694.0434 without restraints) Performing minimization step: 1199. Total energy = 11703.5663 kcal/mol (11687.3577 without restraints) Performing minimization step: 1200. Total energy = 11696.8850 kcal/mol (11680.6807 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1201. Total energy = 11690.2122 kcal/mol (11674.0121 without restraints) Performing minimization step: 1202. Total energy = 11683.5483 kcal/mol (11667.3524 without restraints) Performing minimization step: 1203. Total energy = 11676.8928 kcal/mol (11660.7011 without restraints) Performing minimization step: 1204. Total energy = 11670.2458 kcal/mol (11654.0584 without restraints) Performing minimization step: 1205. Total energy = 11663.6067 kcal/mol (11647.4236 without restraints) Performing minimization step: 1206. Total energy = 11656.9763 kcal/mol (11640.7974 without restraints) Performing minimization step: 1207. Total energy = 11650.3549 kcal/mol (11634.1802 without restraints) Performing minimization step: 1208. Total energy = 11643.7415 kcal/mol (11627.5709 without restraints) Performing minimization step: 1209. Total energy = 11637.1364 kcal/mol (11620.9704 without restraints) Performing minimization step: 1210. Total energy = 11630.5403 kcal/mol (11614.3783 without restraints) Performing minimization step: 1211. Total energy = 11623.9520 kcal/mol (11607.7942 without restraints) Performing minimization step: 1212. Total energy = 11617.3726 kcal/mol (11601.2190 without restraints) Performing minimization step: 1213. Total energy = 11610.8016 kcal/mol (11594.6523 without restraints) Performing minimization step: 1214. Total energy = 11604.2389 kcal/mol (11588.0938 without restraints) Performing minimization step: 1215. Total energy = 11597.6845 kcal/mol (11581.5437 without restraints) Performing minimization step: 1216. Total energy = 11591.1383 kcal/mol (11575.0017 without restraints) Performing minimization step: 1217. Total energy = 11584.6005 kcal/mol (11568.4681 without restraints) Performing minimization step: 1218. Total energy = 11578.0710 kcal/mol (11561.9429 without restraints) Performing minimization step: 1219. Total energy = 11571.5494 kcal/mol (11555.4254 without restraints) Performing minimization step: 1220. Total energy = 11565.0363 kcal/mol (11548.9166 without restraints) Performing minimization step: 1221. Total energy = 11558.5316 kcal/mol (11542.4161 without restraints) Performing minimization step: 1222. Total energy = 11552.0356 kcal/mol (11535.9243 without restraints) Performing minimization step: 1223. Total energy = 11545.5473 kcal/mol (11529.4402 without restraints) Performing minimization step: 1224. Total energy = 11539.0673 kcal/mol (11522.9644 without restraints) Performing minimization step: 1225. Total energy = 11532.5952 kcal/mol (11516.4966 without restraints) Performing minimization step: 1226. Total energy = 11526.1318 kcal/mol (11510.0374 without restraints) Performing minimization step: 1227. Total energy = 11519.6762 kcal/mol (11503.5858 without restraints) Performing minimization step: 1228. Total energy = 11513.2295 kcal/mol (11497.1439 without restraints) Performing minimization step: 1229. Total energy = 11506.7906 kcal/mol (11490.7088 without restraints) Performing minimization step: 1230. Total energy = 11500.3591 kcal/mol (11484.2814 without restraints) Performing minimization step: 1231. Total energy = 11493.9356 kcal/mol (11477.8622 without restraints) Performing minimization step: 1232. Total energy = 11487.5210 kcal/mol (11471.4519 without restraints) Performing minimization step: 1233. Total energy = 11481.1143 kcal/mol (11465.0493 without restraints) Performing minimization step: 1234. Total energy = 11474.7156 kcal/mol (11458.6550 without restraints) Performing minimization step: 1235. Total energy = 11468.3251 kcal/mol (11452.2686 without restraints) Performing minimization step: 1236. Total energy = 11461.9423 kcal/mol (11445.8899 without restraints) Performing minimization step: 1237. Total energy = 11455.5680 kcal/mol (11439.5198 without restraints) Performing minimization step: 1238. Total energy = 11449.2014 kcal/mol (11433.1574 without restraints) Performing minimization step: 1239. Total energy = 11442.8435 kcal/mol (11426.8039 without restraints) Performing minimization step: 1240. Total energy = 11436.4928 kcal/mol (11420.4573 without restraints) Performing minimization step: 1241. Total energy = 11430.1500 kcal/mol (11414.1186 without restraints) Performing minimization step: 1242. Total energy = 11423.8156 kcal/mol (11407.7885 without restraints) Performing minimization step: 1243. Total energy = 11417.4885 kcal/mol (11401.4656 without restraints) Performing minimization step: 1244. Total energy = 11411.1696 kcal/mol (11395.1509 without restraints) Performing minimization step: 1245. Total energy = 11404.8584 kcal/mol (11388.8439 without restraints) Performing minimization step: 1246. Total energy = 11398.5555 kcal/mol (11382.5453 without restraints) Performing minimization step: 1247. Total energy = 11392.2606 kcal/mol (11376.2546 without restraints) Performing minimization step: 1248. Total energy = 11385.9733 kcal/mol (11369.9715 without restraints) Performing minimization step: 1249. Total energy = 11379.6938 kcal/mol (11363.6961 without restraints) Performing minimization step: 1250. Total energy = 11373.4225 kcal/mol (11357.4291 without restraints) Performing minimization step: 1251. Total energy = 11367.1584 kcal/mol (11351.1690 without restraints) Performing minimization step: 1252. Total energy = 11360.9025 kcal/mol (11344.9174 without restraints) Performing minimization step: 1253. Total energy = 11354.6546 kcal/mol (11338.6736 without restraints) Performing minimization step: 1254. Total energy = 11348.4141 kcal/mol (11332.4373 without restraints) Performing minimization step: 1255. Total energy = 11342.1814 kcal/mol (11326.2089 without restraints) Performing minimization step: 1256. Total energy = 11335.9566 kcal/mol (11319.9882 without restraints) Performing minimization step: 1257. Total energy = 11329.7396 kcal/mol (11313.7756 without restraints) Performing minimization step: 1258. Total energy = 11323.5303 kcal/mol (11307.5704 without restraints) Performing minimization step: 1259. Total energy = 11317.3285 kcal/mol (11301.3727 without restraints) Performing minimization step: 1260. Total energy = 11311.1337 kcal/mol (11295.1821 without restraints) Performing minimization step: 1261. Total energy = 11304.9472 kcal/mol (11288.9998 without restraints) Performing minimization step: 1262. Total energy = 11298.7683 kcal/mol (11282.8252 without restraints) Performing minimization step: 1263. Total energy = 11292.5975 kcal/mol (11276.6585 without restraints) Performing minimization step: 1264. Total energy = 11286.4341 kcal/mol (11270.4993 without restraints) Performing minimization step: 1265. Total energy = 11280.2785 kcal/mol (11264.3480 without restraints) Performing minimization step: 1266. Total energy = 11274.1306 kcal/mol (11258.2042 without restraints) Performing minimization step: 1267. Total energy = 11267.9899 kcal/mol (11252.0677 without restraints) Performing minimization step: 1268. Total energy = 11261.8574 kcal/mol (11245.9394 without restraints) Performing minimization step: 1269. Total energy = 11255.7328 kcal/mol (11239.8189 without restraints) Performing minimization step: 1270. Total energy = 11249.6152 kcal/mol (11233.7055 without restraints) Performing minimization step: 1271. Total energy = 11243.5048 kcal/mol (11227.5993 without restraints) Performing minimization step: 1272. Total energy = 11237.4022 kcal/mol (11221.5008 without restraints) Performing minimization step: 1273. Total energy = 11231.3069 kcal/mol (11215.4098 without restraints) Performing minimization step: 1274. Total energy = 11225.2194 kcal/mol (11209.3264 without restraints) Performing minimization step: 1275. Total energy = 11219.1390 kcal/mol (11203.2502 without restraints) Performing minimization step: 1276. Total energy = 11213.0665 kcal/mol (11197.1818 without restraints) Performing minimization step: 1277. Total energy = 11207.0015 kcal/mol (11191.1210 without restraints) Performing minimization step: 1278. Total energy = 11200.9436 kcal/mol (11185.0673 without restraints) Performing minimization step: 1279. Total energy = 11194.8936 kcal/mol (11179.0217 without restraints) Performing minimization step: 1280. Total energy = 11188.8507 kcal/mol (11172.9828 without restraints) Performing minimization step: 1281. Total energy = 11182.8154 kcal/mol (11166.9516 without restraints) Performing minimization step: 1282. Total energy = 11176.7872 kcal/mol (11160.9276 without restraints) Performing minimization step: 1283. Total energy = 11170.7664 kcal/mol (11154.9110 without restraints) Performing minimization step: 1284. Total energy = 11164.7531 kcal/mol (11148.9018 without restraints) Performing minimization step: 1285. Total energy = 11158.7473 kcal/mol (11142.9002 without restraints) Performing minimization step: 1286. Total energy = 11152.7483 kcal/mol (11136.9054 without restraints) Performing minimization step: 1287. Total energy = 11146.7573 kcal/mol (11130.9186 without restraints) Performing minimization step: 1288. Total energy = 11140.7737 kcal/mol (11124.9391 without restraints) Performing minimization step: 1289. Total energy = 11134.7978 kcal/mol (11118.9675 without restraints) Performing minimization step: 1290. Total energy = 11128.8293 kcal/mol (11113.0031 without restraints) Performing minimization step: 1291. Total energy = 11122.8681 kcal/mol (11107.0461 without restraints) Performing minimization step: 1292. Total energy = 11116.9135 kcal/mol (11101.0956 without restraints) Performing minimization step: 1293. Total energy = 11110.9663 kcal/mol (11095.1527 without restraints) Performing minimization step: 1294. Total energy = 11105.0263 kcal/mol (11089.2168 without restraints) Performing minimization step: 1295. Total energy = 11099.0943 kcal/mol (11083.2889 without restraints) Performing minimization step: 1296. Total energy = 11093.1690 kcal/mol (11077.3679 without restraints) Performing minimization step: 1297. Total energy = 11087.2506 kcal/mol (11071.4536 without restraints) Performing minimization step: 1298. Total energy = 11081.3394 kcal/mol (11065.5465 without restraints) Performing minimization step: 1299. Total energy = 11075.4357 kcal/mol (11059.6469 without restraints) Performing minimization step: 1300. Total energy = 11069.5386 kcal/mol (11053.7541 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1301. Total energy = 11063.6490 kcal/mol (11047.8686 without restraints) Performing minimization step: 1302. Total energy = 11057.7667 kcal/mol (11041.9906 without restraints) Performing minimization step: 1303. Total energy = 11051.8914 kcal/mol (11036.1193 without restraints) Performing minimization step: 1304. Total energy = 11046.0229 kcal/mol (11030.2550 without restraints) Performing minimization step: 1305. Total energy = 11040.1620 kcal/mol (11024.3982 without restraints) Performing minimization step: 1306. Total energy = 11034.3078 kcal/mol (11018.5482 without restraints) Performing minimization step: 1307. Total energy = 11028.4612 kcal/mol (11012.7057 without restraints) Performing minimization step: 1308. Total energy = 11022.6214 kcal/mol (11006.8701 without restraints) Performing minimization step: 1309. Total energy = 11016.7887 kcal/mol (11001.0416 without restraints) Performing minimization step: 1310. Total energy = 11010.9632 kcal/mol (10995.2201 without restraints) Performing minimization step: 1311. Total energy = 11005.1449 kcal/mol (10989.4062 without restraints) Performing minimization step: 1312. Total energy = 10999.3346 kcal/mol (10983.5999 without restraints) Performing minimization step: 1313. Total energy = 10993.5301 kcal/mol (10977.7995 without restraints) Performing minimization step: 1314. Total energy = 10987.7330 kcal/mol (10972.0066 without restraints) Performing minimization step: 1315. Total energy = 10981.9426 kcal/mol (10966.2203 without restraints) Performing minimization step: 1316. Total energy = 10976.1591 kcal/mol (10960.4410 without restraints) Performing minimization step: 1317. Total energy = 10970.3832 kcal/mol (10954.6693 without restraints) Performing minimization step: 1318. Total energy = 10964.6130 kcal/mol (10948.9032 without restraints) Performing minimization step: 1319. Total energy = 10958.8501 kcal/mol (10943.1445 without restraints) Performing minimization step: 1320. Total energy = 10953.0944 kcal/mol (10937.3929 without restraints) Performing minimization step: 1321. Total energy = 10947.3456 kcal/mol (10931.6483 without restraints) Performing minimization step: 1322. Total energy = 10941.6040 kcal/mol (10925.9108 without restraints) Performing minimization step: 1323. Total energy = 10935.8692 kcal/mol (10920.1801 without restraints) Performing minimization step: 1324. Total energy = 10930.1411 kcal/mol (10914.4562 without restraints) Performing minimization step: 1325. Total energy = 10924.4199 kcal/mol (10908.7391 without restraints) Performing minimization step: 1326. Total energy = 10918.7056 kcal/mol (10903.0289 without restraints) Performing minimization step: 1327. Total energy = 10912.9984 kcal/mol (10897.3259 without restraints) Performing minimization step: 1328. Total energy = 10907.2981 kcal/mol (10891.6298 without restraints) Performing minimization step: 1329. Total energy = 10901.6045 kcal/mol (10885.9403 without restraints) Performing minimization step: 1330. Total energy = 10895.9176 kcal/mol (10880.2575 without restraints) Performing minimization step: 1331. Total energy = 10890.2374 kcal/mol (10874.5813 without restraints) Performing minimization step: 1332. Total energy = 10884.5641 kcal/mol (10868.9122 without restraints) Performing minimization step: 1333. Total energy = 10878.8983 kcal/mol (10863.2507 without restraints) Performing minimization step: 1334. Total energy = 10873.2387 kcal/mol (10857.5951 without restraints) Performing minimization step: 1335. Total energy = 10867.5854 kcal/mol (10851.9460 without restraints) Performing minimization step: 1336. Total energy = 10861.9390 kcal/mol (10846.3037 without restraints) Performing minimization step: 1337. Total energy = 10856.2999 kcal/mol (10840.6688 without restraints) Performing minimization step: 1338. Total energy = 10850.6668 kcal/mol (10835.0398 without restraints) Performing minimization step: 1339. Total energy = 10845.0409 kcal/mol (10829.4183 without restraints) Performing minimization step: 1340. Total energy = 10839.4220 kcal/mol (10823.8033 without restraints) Performing minimization step: 1341. Total energy = 10833.8094 kcal/mol (10818.1948 without restraints) Performing minimization step: 1342. Total energy = 10828.2034 kcal/mol (10812.5929 without restraints) Performing minimization step: 1343. Total energy = 10822.6044 kcal/mol (10806.9982 without restraints) Performing minimization step: 1344. Total energy = 10817.0121 kcal/mol (10801.4099 without restraints) Performing minimization step: 1345. Total energy = 10811.4261 kcal/mol (10795.8280 without restraints) Performing minimization step: 1346. Total energy = 10805.8468 kcal/mol (10790.2528 without restraints) Performing minimization step: 1347. Total energy = 10800.2741 kcal/mol (10784.6843 without restraints) Performing minimization step: 1348. Total energy = 10794.7079 kcal/mol (10779.1222 without restraints) Performing minimization step: 1349. Total energy = 10789.1485 kcal/mol (10773.5670 without restraints) Performing minimization step: 1350. Total energy = 10783.5957 kcal/mol (10768.0182 without restraints) Performing minimization step: 1351. Total energy = 10778.0493 kcal/mol (10762.4758 without restraints) Performing minimization step: 1352. Total energy = 10772.5095 kcal/mol (10756.9403 without restraints) Performing minimization step: 1353. Total energy = 10766.9765 kcal/mol (10751.4116 without restraints) Performing minimization step: 1354. Total energy = 10761.4499 kcal/mol (10745.8889 without restraints) Performing minimization step: 1355. Total energy = 10755.9299 kcal/mol (10740.3730 without restraints) Performing minimization step: 1356. Total energy = 10750.4165 kcal/mol (10734.8638 without restraints) Performing minimization step: 1357. Total energy = 10744.9097 kcal/mol (10729.3610 without restraints) Performing minimization step: 1358. Total energy = 10739.4092 kcal/mol (10723.8646 without restraints) Performing minimization step: 1359. Total energy = 10733.9146 kcal/mol (10718.3742 without restraints) Performing minimization step: 1360. Total energy = 10728.4270 kcal/mol (10712.8907 without restraints) Performing minimization step: 1361. Total energy = 10722.9458 kcal/mol (10707.4137 without restraints) Performing minimization step: 1362. Total energy = 10717.4712 kcal/mol (10701.9430 without restraints) Performing minimization step: 1363. Total energy = 10712.0031 kcal/mol (10696.4794 without restraints) Performing minimization step: 1364. Total energy = 10706.5421 kcal/mol (10691.0223 without restraints) Performing minimization step: 1365. Total energy = 10701.0867 kcal/mol (10685.5710 without restraints) Performing minimization step: 1366. Total energy = 10695.6384 kcal/mol (10680.1267 without restraints) Performing minimization step: 1367. Total energy = 10690.1959 kcal/mol (10674.6884 without restraints) Performing minimization step: 1368. Total energy = 10684.7602 kcal/mol (10669.2568 without restraints) Performing minimization step: 1369. Total energy = 10679.3304 kcal/mol (10663.8311 without restraints) Performing minimization step: 1370. Total energy = 10673.9070 kcal/mol (10658.4118 without restraints) Performing minimization step: 1371. Total energy = 10668.4904 kcal/mol (10652.9993 without restraints) Performing minimization step: 1372. Total energy = 10663.0796 kcal/mol (10647.5927 without restraints) Performing minimization step: 1373. Total energy = 10657.6753 kcal/mol (10642.1925 without restraints) Performing minimization step: 1374. Total energy = 10652.2776 kcal/mol (10636.7989 without restraints) Performing minimization step: 1375. Total energy = 10646.8861 kcal/mol (10631.4115 without restraints) Performing minimization step: 1376. Total energy = 10641.5008 kcal/mol (10626.0301 without restraints) Performing minimization step: 1377. Total energy = 10636.1218 kcal/mol (10620.6555 without restraints) Performing minimization step: 1378. Total energy = 10630.7494 kcal/mol (10615.2871 without restraints) Performing minimization step: 1379. Total energy = 10625.3832 kcal/mol (10609.9249 without restraints) Performing minimization step: 1380. Total energy = 10620.0232 kcal/mol (10604.5692 without restraints) Performing minimization step: 1381. Total energy = 10614.6700 kcal/mol (10599.2200 without restraints) Performing minimization step: 1382. Total energy = 10609.3224 kcal/mol (10593.8766 without restraints) Performing minimization step: 1383. Total energy = 10603.9816 kcal/mol (10588.5398 without restraints) Performing minimization step: 1384. Total energy = 10598.6465 kcal/mol (10583.2088 without restraints) Performing minimization step: 1385. Total energy = 10593.3180 kcal/mol (10577.8844 without restraints) Performing minimization step: 1386. Total energy = 10587.9957 kcal/mol (10572.5662 without restraints) Performing minimization step: 1387. Total energy = 10582.6791 kcal/mol (10567.2537 without restraints) Performing minimization step: 1388. Total energy = 10577.3691 kcal/mol (10561.9478 without restraints) Performing minimization step: 1389. Total energy = 10572.0654 kcal/mol (10556.6481 without restraints) Performing minimization step: 1390. Total energy = 10566.7676 kcal/mol (10551.3544 without restraints) Performing minimization step: 1391. Total energy = 10561.4759 kcal/mol (10546.0668 without restraints) Performing minimization step: 1392. Total energy = 10556.1907 kcal/mol (10540.7857 without restraints) Performing minimization step: 1393. Total energy = 10550.9113 kcal/mol (10535.5105 without restraints) Performing minimization step: 1394. Total energy = 10545.6381 kcal/mol (10530.2414 without restraints) Performing minimization step: 1395. Total energy = 10540.3710 kcal/mol (10524.9783 without restraints) Performing minimization step: 1396. Total energy = 10535.1105 kcal/mol (10519.7219 without restraints) Performing minimization step: 1397. Total energy = 10529.8556 kcal/mol (10514.4711 without restraints) Performing minimization step: 1398. Total energy = 10524.6070 kcal/mol (10509.2265 without restraints) Performing minimization step: 1399. Total energy = 10519.3644 kcal/mol (10503.9881 without restraints) Performing minimization step: 1400. Total energy = 10514.1278 kcal/mol (10498.7556 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1401. Total energy = 10508.8973 kcal/mol (10493.5292 without restraints) Performing minimization step: 1402. Total energy = 10503.6733 kcal/mol (10488.3092 without restraints) Performing minimization step: 1403. Total energy = 10498.4548 kcal/mol (10483.0948 without restraints) Performing minimization step: 1404. Total energy = 10493.2426 kcal/mol (10477.8867 without restraints) Performing minimization step: 1405. Total energy = 10488.0362 kcal/mol (10472.6843 without restraints) Performing minimization step: 1406. Total energy = 10482.8356 kcal/mol (10467.4879 without restraints) Performing minimization step: 1407. Total energy = 10477.6412 kcal/mol (10462.2976 without restraints) Performing minimization step: 1408. Total energy = 10472.4530 kcal/mol (10457.1134 without restraints) Performing minimization step: 1409. Total energy = 10467.2705 kcal/mol (10451.9350 without restraints) Performing minimization step: 1410. Total energy = 10462.0940 kcal/mol (10446.7625 without restraints) Performing minimization step: 1411. Total energy = 10456.9233 kcal/mol (10441.5959 without restraints) Performing minimization step: 1412. Total energy = 10451.7586 kcal/mol (10436.4353 without restraints) Performing minimization step: 1413. Total energy = 10446.6002 kcal/mol (10431.2809 without restraints) Performing minimization step: 1414. Total energy = 10441.4476 kcal/mol (10426.1324 without restraints) Performing minimization step: 1415. Total energy = 10436.3002 kcal/mol (10420.9891 without restraints) Performing minimization step: 1416. Total energy = 10431.1595 kcal/mol (10415.8525 without restraints) Performing minimization step: 1417. Total energy = 10426.0245 kcal/mol (10410.7214 without restraints) Performing minimization step: 1418. Total energy = 10420.8950 kcal/mol (10405.5961 without restraints) Performing minimization step: 1419. Total energy = 10415.7716 kcal/mol (10400.4768 without restraints) Performing minimization step: 1420. Total energy = 10410.6544 kcal/mol (10395.3637 without restraints) Performing minimization step: 1421. Total energy = 10405.5427 kcal/mol (10390.2562 without restraints) Performing minimization step: 1422. Total energy = 10400.4368 kcal/mol (10385.1543 without restraints) Performing minimization step: 1423. Total energy = 10395.3373 kcal/mol (10380.0587 without restraints) Performing minimization step: 1424. Total energy = 10390.2432 kcal/mol (10374.9688 without restraints) Performing minimization step: 1425. Total energy = 10385.1555 kcal/mol (10369.8852 without restraints) Performing minimization step: 1426. Total energy = 10380.0732 kcal/mol (10364.8069 without restraints) Performing minimization step: 1427. Total energy = 10374.9966 kcal/mol (10359.7344 without restraints) Performing minimization step: 1428. Total energy = 10369.9259 kcal/mol (10354.6677 without restraints) Performing minimization step: 1429. Total energy = 10364.8612 kcal/mol (10349.6071 without restraints) Performing minimization step: 1430. Total energy = 10359.8020 kcal/mol (10344.5519 without restraints) Performing minimization step: 1431. Total energy = 10354.7482 kcal/mol (10339.5022 without restraints) Performing minimization step: 1432. Total energy = 10349.7009 kcal/mol (10334.4590 without restraints) Performing minimization step: 1433. Total energy = 10344.6593 kcal/mol (10329.4214 without restraints) Performing minimization step: 1434. Total energy = 10339.6231 kcal/mol (10324.3893 without restraints) Performing minimization step: 1435. Total energy = 10334.5926 kcal/mol (10319.3628 without restraints) Performing minimization step: 1436. Total energy = 10329.5677 kcal/mol (10314.3421 without restraints) Performing minimization step: 1437. Total energy = 10324.5486 kcal/mol (10309.3270 without restraints) Performing minimization step: 1438. Total energy = 10319.5354 kcal/mol (10304.3178 without restraints) Performing minimization step: 1439. Total energy = 10314.5280 kcal/mol (10299.3144 without restraints) Performing minimization step: 1440. Total energy = 10309.5259 kcal/mol (10294.3164 without restraints) Performing minimization step: 1441. Total energy = 10304.5295 kcal/mol (10289.3240 without restraints) Performing minimization step: 1442. Total energy = 10299.5387 kcal/mol (10284.3373 without restraints) Performing minimization step: 1443. Total energy = 10294.5540 kcal/mol (10279.3567 without restraints) Performing minimization step: 1444. Total energy = 10289.5743 kcal/mol (10274.3810 without restraints) Performing minimization step: 1445. Total energy = 10284.5997 kcal/mol (10269.4104 without restraints) Performing minimization step: 1446. Total energy = 10279.6318 kcal/mol (10264.4467 without restraints) Performing minimization step: 1447. Total energy = 10274.6699 kcal/mol (10259.4888 without restraints) Performing minimization step: 1448. Total energy = 10269.7128 kcal/mol (10254.5357 without restraints) Performing minimization step: 1449. Total energy = 10264.7612 kcal/mol (10249.5881 without restraints) Performing minimization step: 1450. Total energy = 10259.8154 kcal/mol (10244.6464 without restraints) Performing minimization step: 1451. Total energy = 10254.8752 kcal/mol (10239.7102 without restraints) Performing minimization step: 1452. Total energy = 10249.9405 kcal/mol (10234.7795 without restraints) Performing minimization step: 1453. Total energy = 10245.0112 kcal/mol (10229.8543 without restraints) Performing minimization step: 1454. Total energy = 10240.0877 kcal/mol (10224.9349 without restraints) Performing minimization step: 1455. Total energy = 10235.1698 kcal/mol (10220.0209 without restraints) Performing minimization step: 1456. Total energy = 10230.2571 kcal/mol (10215.1124 without restraints) Performing minimization step: 1457. Total energy = 10225.3498 kcal/mol (10210.2091 without restraints) Performing minimization step: 1458. Total energy = 10220.4484 kcal/mol (10205.3117 without restraints) Performing minimization step: 1459. Total energy = 10215.5524 kcal/mol (10200.4197 without restraints) Performing minimization step: 1460. Total energy = 10210.6619 kcal/mol (10195.5332 without restraints) Performing minimization step: 1461. Total energy = 10205.7768 kcal/mol (10190.6522 without restraints) Performing minimization step: 1462. Total energy = 10200.8973 kcal/mol (10185.7768 without restraints) Performing minimization step: 1463. Total energy = 10196.0232 kcal/mol (10180.9066 without restraints) Performing minimization step: 1464. Total energy = 10191.1542 kcal/mol (10176.0417 without restraints) Performing minimization step: 1465. Total energy = 10186.2917 kcal/mol (10171.1832 without restraints) Performing minimization step: 1466. Total energy = 10181.4340 kcal/mol (10166.3297 without restraints) Performing minimization step: 1467. Total energy = 10176.5818 kcal/mol (10161.4814 without restraints) Performing minimization step: 1468. Total energy = 10171.7346 kcal/mol (10156.6383 without restraints) Performing minimization step: 1469. Total energy = 10166.8929 kcal/mol (10151.8006 without restraints) Performing minimization step: 1470. Total energy = 10162.0567 kcal/mol (10146.9684 without restraints) Performing minimization step: 1471. Total energy = 10157.2263 kcal/mol (10142.1421 without restraints) Performing minimization step: 1472. Total energy = 10152.4014 kcal/mol (10137.3211 without restraints) Performing minimization step: 1473. Total energy = 10147.5810 kcal/mol (10132.5049 without restraints) Performing minimization step: 1474. Total energy = 10142.7666 kcal/mol (10127.6944 without restraints) Performing minimization step: 1475. Total energy = 10137.9573 kcal/mol (10122.8889 without restraints) Performing minimization step: 1476. Total energy = 10133.1526 kcal/mol (10118.0883 without restraints) Performing minimization step: 1477. Total energy = 10128.3534 kcal/mol (10113.2932 without restraints) Performing minimization step: 1478. Total energy = 10123.5599 kcal/mol (10108.5035 without restraints) Performing minimization step: 1479. Total energy = 10118.7715 kcal/mol (10103.7194 without restraints) Performing minimization step: 1480. Total energy = 10113.9886 kcal/mol (10098.9405 without restraints) Performing minimization step: 1481. Total energy = 10109.2112 kcal/mol (10094.1670 without restraints) Performing minimization step: 1482. Total energy = 10104.4389 kcal/mol (10089.3986 without restraints) Performing minimization step: 1483. Total energy = 10099.6718 kcal/mol (10084.6357 without restraints) Performing minimization step: 1484. Total energy = 10094.9106 kcal/mol (10079.8786 without restraints) Performing minimization step: 1485. Total energy = 10090.1541 kcal/mol (10075.1259 without restraints) Performing minimization step: 1486. Total energy = 10085.4032 kcal/mol (10070.3792 without restraints) Performing minimization step: 1487. Total energy = 10080.6575 kcal/mol (10065.6375 without restraints) Performing minimization step: 1488. Total energy = 10075.9170 kcal/mol (10060.9012 without restraints) Performing minimization step: 1489. Total energy = 10071.1817 kcal/mol (10056.1698 without restraints) Performing minimization step: 1490. Total energy = 10066.4516 kcal/mol (10051.4436 without restraints) Performing minimization step: 1491. Total energy = 10061.7267 kcal/mol (10046.7227 without restraints) Performing minimization step: 1492. Total energy = 10057.0068 kcal/mol (10042.0068 without restraints) Performing minimization step: 1493. Total energy = 10052.2921 kcal/mol (10037.2962 without restraints) Performing minimization step: 1494. Total energy = 10047.5825 kcal/mol (10032.5905 without restraints) Performing minimization step: 1495. Total energy = 10042.8783 kcal/mol (10027.8904 without restraints) Performing minimization step: 1496. Total energy = 10038.1790 kcal/mol (10023.1951 without restraints) Performing minimization step: 1497. Total energy = 10033.4851 kcal/mol (10018.5052 without restraints) Performing minimization step: 1498. Total energy = 10028.7966 kcal/mol (10013.8207 without restraints) Performing minimization step: 1499. Total energy = 10024.1132 kcal/mol (10009.1412 without restraints) Performing minimization step: 1500. Total energy = 10019.4345 kcal/mol (10004.4666 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1501. Total energy = 10014.7607 kcal/mol (9999.7968 without restraints) Performing minimization step: 1502. Total energy = 10010.0926 kcal/mol (9995.1327 without restraints) Performing minimization step: 1503. Total energy = 10005.4297 kcal/mol (9990.4737 without restraints) Performing minimization step: 1504. Total energy = 10000.7716 kcal/mol (9985.8197 without restraints) Performing minimization step: 1505. Total energy = 9996.1186 kcal/mol (9981.1706 without restraints) Performing minimization step: 1506. Total energy = 9991.4705 kcal/mol (9976.5265 without restraints) Performing minimization step: 1507. Total energy = 9986.8277 kcal/mol (9971.8877 without restraints) Performing minimization step: 1508. Total energy = 9982.1901 kcal/mol (9967.2541 without restraints) Performing minimization step: 1509. Total energy = 9977.5567 kcal/mol (9962.6244 without restraints) Performing minimization step: 1510. Total energy = 9972.9287 kcal/mol (9958.0007 without restraints) Performing minimization step: 1511. Total energy = 9968.3062 kcal/mol (9953.3822 without restraints) Performing minimization step: 1512. Total energy = 9963.6883 kcal/mol (9948.7683 without restraints) Performing minimization step: 1513. Total energy = 9959.0755 kcal/mol (9944.1595 without restraints) Performing minimization step: 1514. Total energy = 9954.4679 kcal/mol (9939.5559 without restraints) Performing minimization step: 1515. Total energy = 9949.8656 kcal/mol (9934.9575 without restraints) Performing minimization step: 1516. Total energy = 9945.2679 kcal/mol (9930.3638 without restraints) Performing minimization step: 1517. Total energy = 9940.6754 kcal/mol (9925.7753 without restraints) Performing minimization step: 1518. Total energy = 9936.0877 kcal/mol (9921.1916 without restraints) Performing minimization step: 1519. Total energy = 9931.5056 kcal/mol (9916.6135 without restraints) Performing minimization step: 1520. Total energy = 9926.9281 kcal/mol (9912.0399 without restraints) Performing minimization step: 1521. Total energy = 9922.3550 kcal/mol (9907.4709 without restraints) Performing minimization step: 1522. Total energy = 9917.7868 kcal/mol (9902.9066 without restraints) Performing minimization step: 1523. Total energy = 9913.2240 kcal/mol (9898.3477 without restraints) Performing minimization step: 1524. Total energy = 9908.6657 kcal/mol (9893.7934 without restraints) Performing minimization step: 1525. Total energy = 9904.1125 kcal/mol (9889.2442 without restraints) Performing minimization step: 1526. Total energy = 9899.5646 kcal/mol (9884.7004 without restraints) Performing minimization step: 1527. Total energy = 9895.0210 kcal/mol (9880.1608 without restraints) Performing minimization step: 1528. Total energy = 9890.4824 kcal/mol (9875.6261 without restraints) Performing minimization step: 1529. Total energy = 9885.9488 kcal/mol (9871.0964 without restraints) Performing minimization step: 1530. Total energy = 9881.4202 kcal/mol (9866.5718 without restraints) Performing minimization step: 1531. Total energy = 9876.8964 kcal/mol (9862.0520 without restraints) Performing minimization step: 1532. Total energy = 9872.3770 kcal/mol (9857.5365 without restraints) Performing minimization step: 1533. Total energy = 9867.8629 kcal/mol (9853.0266 without restraints) Performing minimization step: 1534. Total energy = 9863.3537 kcal/mol (9848.5212 without restraints) Performing minimization step: 1535. Total energy = 9858.8490 kcal/mol (9844.0205 without restraints) Performing minimization step: 1536. Total energy = 9854.3496 kcal/mol (9839.5252 without restraints) Performing minimization step: 1537. Total energy = 9849.8544 kcal/mol (9835.0338 without restraints) Performing minimization step: 1538. Total energy = 9845.3643 kcal/mol (9830.5477 without restraints) Performing minimization step: 1539. Total energy = 9840.8792 kcal/mol (9826.0666 without restraints) Performing minimization step: 1540. Total energy = 9836.3990 kcal/mol (9821.5903 without restraints) Performing minimization step: 1541. Total energy = 9831.9235 kcal/mol (9817.1187 without restraints) Performing minimization step: 1542. Total energy = 9827.4522 kcal/mol (9812.6513 without restraints) Performing minimization step: 1543. Total energy = 9822.9859 kcal/mol (9808.1890 without restraints) Performing minimization step: 1544. Total energy = 9818.5246 kcal/mol (9803.7319 without restraints) Performing minimization step: 1545. Total energy = 9814.0683 kcal/mol (9799.2793 without restraints) Performing minimization step: 1546. Total energy = 9809.6160 kcal/mol (9794.8310 without restraints) Performing minimization step: 1547. Total energy = 9805.1686 kcal/mol (9790.3876 without restraints) Performing minimization step: 1548. Total energy = 9800.7264 kcal/mol (9785.9492 without restraints) Performing minimization step: 1549. Total energy = 9796.2884 kcal/mol (9781.5152 without restraints) Performing minimization step: 1550. Total energy = 9791.8554 kcal/mol (9777.0862 without restraints) Performing minimization step: 1551. Total energy = 9787.4269 kcal/mol (9772.6616 without restraints) Performing minimization step: 1552. Total energy = 9783.0036 kcal/mol (9768.2423 without restraints) Performing minimization step: 1553. Total energy = 9778.5845 kcal/mol (9763.8272 without restraints) Performing minimization step: 1554. Total energy = 9774.1705 kcal/mol (9759.4171 without restraints) Performing minimization step: 1555. Total energy = 9769.7604 kcal/mol (9755.0108 without restraints) Performing minimization step: 1556. Total energy = 9765.3551 kcal/mol (9750.6095 without restraints) Performing minimization step: 1557. Total energy = 9760.9543 kcal/mol (9746.2128 without restraints) Performing minimization step: 1558. Total energy = 9756.5584 kcal/mol (9741.8208 without restraints) Performing minimization step: 1559. Total energy = 9752.1671 kcal/mol (9737.4334 without restraints) Performing minimization step: 1560. Total energy = 9747.7803 kcal/mol (9733.0505 without restraints) Performing minimization step: 1561. Total energy = 9743.3985 kcal/mol (9728.6727 without restraints) Performing minimization step: 1562. Total energy = 9739.0210 kcal/mol (9724.2992 without restraints) Performing minimization step: 1563. Total energy = 9734.6482 kcal/mol (9719.9301 without restraints) Performing minimization step: 1564. Total energy = 9730.2800 kcal/mol (9715.5660 without restraints) Performing minimization step: 1565. Total energy = 9725.9162 kcal/mol (9711.2062 without restraints) Performing minimization step: 1566. Total energy = 9721.5575 kcal/mol (9706.8514 without restraints) Performing minimization step: 1567. Total energy = 9717.2030 kcal/mol (9702.5007 without restraints) Performing minimization step: 1568. Total energy = 9712.8531 kcal/mol (9698.1547 without restraints) Performing minimization step: 1569. Total energy = 9708.5075 kcal/mol (9693.8132 without restraints) Performing minimization step: 1570. Total energy = 9704.1664 kcal/mol (9689.4760 without restraints) Performing minimization step: 1571. Total energy = 9699.8300 kcal/mol (9685.1435 without restraints) Performing minimization step: 1572. Total energy = 9695.4981 kcal/mol (9680.8155 without restraints) Performing minimization step: 1573. Total energy = 9691.1708 kcal/mol (9676.4923 without restraints) Performing minimization step: 1574. Total energy = 9686.8480 kcal/mol (9672.1732 without restraints) Performing minimization step: 1575. Total energy = 9682.5295 kcal/mol (9667.8586 without restraints) Performing minimization step: 1576. Total energy = 9678.2157 kcal/mol (9663.5487 without restraints) Performing minimization step: 1577. Total energy = 9673.9060 kcal/mol (9659.2431 without restraints) Performing minimization step: 1578. Total energy = 9669.6010 kcal/mol (9654.9419 without restraints) Performing minimization step: 1579. Total energy = 9665.3005 kcal/mol (9650.6453 without restraints) Performing minimization step: 1580. Total energy = 9661.0044 kcal/mol (9646.3532 without restraints) Performing minimization step: 1581. Total energy = 9656.7131 kcal/mol (9642.0658 without restraints) Performing minimization step: 1582. Total energy = 9652.4259 kcal/mol (9637.7825 without restraints) Performing minimization step: 1583. Total energy = 9648.1433 kcal/mol (9633.5038 without restraints) Performing minimization step: 1584. Total energy = 9643.8650 kcal/mol (9629.2294 without restraints) Performing minimization step: 1585. Total energy = 9639.5911 kcal/mol (9624.9594 without restraints) Performing minimization step: 1586. Total energy = 9635.3218 kcal/mol (9620.6941 without restraints) Performing minimization step: 1587. Total energy = 9631.0567 kcal/mol (9616.4328 without restraints) Performing minimization step: 1588. Total energy = 9626.7956 kcal/mol (9612.1757 without restraints) Performing minimization step: 1589. Total energy = 9622.5391 kcal/mol (9607.9231 without restraints) Performing minimization step: 1590. Total energy = 9618.2873 kcal/mol (9603.6752 without restraints) Performing minimization step: 1591. Total energy = 9614.0394 kcal/mol (9599.4312 without restraints) Performing minimization step: 1592. Total energy = 9609.7963 kcal/mol (9595.1921 without restraints) Performing minimization step: 1593. Total energy = 9605.5572 kcal/mol (9590.9568 without restraints) Performing minimization step: 1594. Total energy = 9601.3223 kcal/mol (9586.7259 without restraints) Performing minimization step: 1595. Total energy = 9597.0921 kcal/mol (9582.4995 without restraints) Performing minimization step: 1596. Total energy = 9592.8663 kcal/mol (9578.2776 without restraints) Performing minimization step: 1597. Total energy = 9588.6446 kcal/mol (9574.0597 without restraints) Performing minimization step: 1598. Total energy = 9584.4272 kcal/mol (9569.8464 without restraints) Performing minimization step: 1599. Total energy = 9580.2144 kcal/mol (9565.6374 without restraints) Performing minimization step: 1600. Total energy = 9576.0054 kcal/mol (9561.4323 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1601. Total energy = 9571.8010 kcal/mol (9557.2317 without restraints) Performing minimization step: 1602. Total energy = 9567.6005 kcal/mol (9553.0352 without restraints) Performing minimization step: 1603. Total energy = 9563.4046 kcal/mol (9548.8432 without restraints) Performing minimization step: 1604. Total energy = 9559.2129 kcal/mol (9544.6554 without restraints) Performing minimization step: 1605. Total energy = 9555.0255 kcal/mol (9540.4718 without restraints) Performing minimization step: 1606. Total energy = 9550.8425 kcal/mol (9536.2927 without restraints) Performing minimization step: 1607. Total energy = 9546.6641 kcal/mol (9532.1183 without restraints) Performing minimization step: 1608. Total energy = 9542.4892 kcal/mol (9527.9472 without restraints) Performing minimization step: 1609. Total energy = 9538.3184 kcal/mol (9523.7803 without restraints) Performing minimization step: 1610. Total energy = 9534.1526 kcal/mol (9519.6183 without restraints) Performing minimization step: 1611. Total energy = 9529.9908 kcal/mol (9515.4603 without restraints) Performing minimization step: 1612. Total energy = 9525.8326 kcal/mol (9511.3061 without restraints) Performing minimization step: 1613. Total energy = 9521.6788 kcal/mol (9507.1562 without restraints) Performing minimization step: 1614. Total energy = 9517.5294 kcal/mol (9503.0107 without restraints) Performing minimization step: 1615. Total energy = 9513.3840 kcal/mol (9498.8691 without restraints) Performing minimization step: 1616. Total energy = 9509.2426 kcal/mol (9494.7316 without restraints) Performing minimization step: 1617. Total energy = 9505.1053 kcal/mol (9490.5982 without restraints) Performing minimization step: 1618. Total energy = 9500.9724 kcal/mol (9486.4691 without restraints) Performing minimization step: 1619. Total energy = 9496.8431 kcal/mol (9482.3436 without restraints) Performing minimization step: 1620. Total energy = 9492.7186 kcal/mol (9478.2232 without restraints) Performing minimization step: 1621. Total energy = 9488.5983 kcal/mol (9474.1066 without restraints) Performing minimization step: 1622. Total energy = 9484.4820 kcal/mol (9469.9943 without restraints) Performing minimization step: 1623. Total energy = 9480.3696 kcal/mol (9465.8857 without restraints) Performing minimization step: 1624. Total energy = 9476.2614 kcal/mol (9461.7814 without restraints) Performing minimization step: 1625. Total energy = 9472.1578 kcal/mol (9457.6818 without restraints) Performing minimization step: 1626. Total energy = 9468.0579 kcal/mol (9453.5856 without restraints) Performing minimization step: 1627. Total energy = 9463.9619 kcal/mol (9449.4934 without restraints) Performing minimization step: 1628. Total energy = 9459.8699 kcal/mol (9445.4052 without restraints) Performing minimization step: 1629. Total energy = 9455.7821 kcal/mol (9441.3214 without restraints) Performing minimization step: 1630. Total energy = 9451.6984 kcal/mol (9437.2415 without restraints) Performing minimization step: 1631. Total energy = 9447.6186 kcal/mol (9433.1656 without restraints) Performing minimization step: 1632. Total energy = 9443.5427 kcal/mol (9429.0935 without restraints) Performing minimization step: 1633. Total energy = 9439.4711 kcal/mol (9425.0258 without restraints) Performing minimization step: 1634. Total energy = 9435.4033 kcal/mol (9420.9618 without restraints) Performing minimization step: 1635. Total energy = 9431.3397 kcal/mol (9416.9021 without restraints) Performing minimization step: 1636. Total energy = 9427.2802 kcal/mol (9412.8464 without restraints) Performing minimization step: 1637. Total energy = 9423.2245 kcal/mol (9408.7946 without restraints) Performing minimization step: 1638. Total energy = 9419.1730 kcal/mol (9404.7470 without restraints) Performing minimization step: 1639. Total energy = 9415.1251 kcal/mol (9400.7028 without restraints) Performing minimization step: 1640. Total energy = 9411.0814 kcal/mol (9396.6630 without restraints) Performing minimization step: 1641. Total energy = 9407.0416 kcal/mol (9392.6271 without restraints) Performing minimization step: 1642. Total energy = 9403.0062 kcal/mol (9388.5955 without restraints) Performing minimization step: 1643. Total energy = 9398.9743 kcal/mol (9384.5675 without restraints) Performing minimization step: 1644. Total energy = 9394.9464 kcal/mol (9380.5434 without restraints) Performing minimization step: 1645. Total energy = 9390.9224 kcal/mol (9376.5233 without restraints) Performing minimization step: 1646. Total energy = 9386.9024 kcal/mol (9372.5072 without restraints) Performing minimization step: 1647. Total energy = 9382.8860 kcal/mol (9368.4945 without restraints) Performing minimization step: 1648. Total energy = 9378.8741 kcal/mol (9364.4865 without restraints) Performing minimization step: 1649. Total energy = 9374.8659 kcal/mol (9360.4821 without restraints) Performing minimization step: 1650. Total energy = 9370.8615 kcal/mol (9356.4815 without restraints) Performing minimization step: 1651. Total energy = 9366.8612 kcal/mol (9352.4850 without restraints) Performing minimization step: 1652. Total energy = 9362.8643 kcal/mol (9348.4921 without restraints) Performing minimization step: 1653. Total energy = 9358.8718 kcal/mol (9344.5032 without restraints) Performing minimization step: 1654. Total energy = 9354.8829 kcal/mol (9340.5183 without restraints) Performing minimization step: 1655. Total energy = 9350.8976 kcal/mol (9336.5368 without restraints) Performing minimization step: 1656. Total energy = 9346.9164 kcal/mol (9332.5593 without restraints) Performing minimization step: 1657. Total energy = 9342.9388 kcal/mol (9328.5856 without restraints) Performing minimization step: 1658. Total energy = 9338.9652 kcal/mol (9324.6159 without restraints) Performing minimization step: 1659. Total energy = 9334.9955 kcal/mol (9320.6499 without restraints) Performing minimization step: 1660. Total energy = 9331.0298 kcal/mol (9316.6880 without restraints) Performing minimization step: 1661. Total energy = 9327.0676 kcal/mol (9312.7295 without restraints) Performing minimization step: 1662. Total energy = 9323.1092 kcal/mol (9308.7752 without restraints) Performing minimization step: 1663. Total energy = 9319.1545 kcal/mol (9304.8241 without restraints) Performing minimization step: 1664. Total energy = 9315.2037 kcal/mol (9300.8772 without restraints) Performing minimization step: 1665. Total energy = 9311.2567 kcal/mol (9296.9340 without restraints) Performing minimization step: 1666. Total energy = 9307.3136 kcal/mol (9292.9947 without restraints) Performing minimization step: 1667. Total energy = 9303.3742 kcal/mol (9289.0591 without restraints) Performing minimization step: 1668. Total energy = 9299.4386 kcal/mol (9285.1274 without restraints) Performing minimization step: 1669. Total energy = 9295.5067 kcal/mol (9281.1992 without restraints) Performing minimization step: 1670. Total energy = 9291.5787 kcal/mol (9277.2750 without restraints) Performing minimization step: 1671. Total energy = 9287.6545 kcal/mol (9273.3546 without restraints) Performing minimization step: 1672. Total energy = 9283.7339 kcal/mol (9269.4378 without restraints) Performing minimization step: 1673. Total energy = 9279.8170 kcal/mol (9265.5248 without restraints) Performing minimization step: 1674. Total energy = 9275.9039 kcal/mol (9261.6154 without restraints) Performing minimization step: 1675. Total energy = 9271.9939 kcal/mol (9257.7092 without restraints) Performing minimization step: 1676. Total energy = 9268.0885 kcal/mol (9253.8075 without restraints) Performing minimization step: 1677. Total energy = 9264.1862 kcal/mol (9249.9091 without restraints) Performing minimization step: 1678. Total energy = 9260.2876 kcal/mol (9246.0143 without restraints) Performing minimization step: 1679. Total energy = 9256.3931 kcal/mol (9242.1234 without restraints) Performing minimization step: 1680. Total energy = 9252.5018 kcal/mol (9238.2360 without restraints) Performing minimization step: 1681. Total energy = 9248.6144 kcal/mol (9234.3525 without restraints) Performing minimization step: 1682. Total energy = 9244.7311 kcal/mol (9230.4729 without restraints) Performing minimization step: 1683. Total energy = 9240.8508 kcal/mol (9226.5965 without restraints) Performing minimization step: 1684. Total energy = 9236.9744 kcal/mol (9222.7238 without restraints) Performing minimization step: 1685. Total energy = 9233.1018 kcal/mol (9218.8549 without restraints) Performing minimization step: 1686. Total energy = 9229.2322 kcal/mol (9214.9893 without restraints) Performing minimization step: 1687. Total energy = 9225.3668 kcal/mol (9211.1276 without restraints) Performing minimization step: 1688. Total energy = 9221.5044 kcal/mol (9207.2689 without restraints) Performing minimization step: 1689. Total energy = 9217.6456 kcal/mol (9203.4139 without restraints) Performing minimization step: 1690. Total energy = 9213.7907 kcal/mol (9199.5628 without restraints) Performing minimization step: 1691. Total energy = 9209.9392 kcal/mol (9195.7151 without restraints) Performing minimization step: 1692. Total energy = 9206.0911 kcal/mol (9191.8707 without restraints) Performing minimization step: 1693. Total energy = 9202.2469 kcal/mol (9188.0305 without restraints) Performing minimization step: 1694. Total energy = 9198.4064 kcal/mol (9184.1935 without restraints) Performing minimization step: 1695. Total energy = 9194.5693 kcal/mol (9180.3603 without restraints) Performing minimization step: 1696. Total energy = 9190.7354 kcal/mol (9176.5300 without restraints) Performing minimization step: 1697. Total energy = 9186.9049 kcal/mol (9172.7032 without restraints) Performing minimization step: 1698. Total energy = 9183.0779 kcal/mol (9168.8801 without restraints) Performing minimization step: 1699. Total energy = 9179.2545 kcal/mol (9165.0604 without restraints) Performing minimization step: 1700. Total energy = 9175.4351 kcal/mol (9161.2451 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1701. Total energy = 9171.6194 kcal/mol (9157.4328 without restraints) Performing minimization step: 1702. Total energy = 9167.8065 kcal/mol (9153.6237 without restraints) Performing minimization step: 1703. Total energy = 9163.9973 kcal/mol (9149.8183 without restraints) Performing minimization step: 1704. Total energy = 9160.1918 kcal/mol (9146.0165 without restraints) Performing minimization step: 1705. Total energy = 9156.3896 kcal/mol (9142.2180 without restraints) Performing minimization step: 1706. Total energy = 9152.5912 kcal/mol (9138.4234 without restraints) Performing minimization step: 1707. Total energy = 9148.7961 kcal/mol (9134.6321 without restraints) Performing minimization step: 1708. Total energy = 9145.0043 kcal/mol (9130.8440 without restraints) Performing minimization step: 1709. Total energy = 9141.2159 kcal/mol (9127.0594 without restraints) Performing minimization step: 1710. Total energy = 9137.4305 kcal/mol (9123.2777 without restraints) Performing minimization step: 1711. Total energy = 9133.6492 kcal/mol (9119.5001 without restraints) Performing minimization step: 1712. Total energy = 9129.8711 kcal/mol (9115.7257 without restraints) Performing minimization step: 1713. Total energy = 9126.0963 kcal/mol (9111.9548 without restraints) Performing minimization step: 1714. Total energy = 9122.3251 kcal/mol (9108.1872 without restraints) Performing minimization step: 1715. Total energy = 9118.5571 kcal/mol (9104.4230 without restraints) Performing minimization step: 1716. Total energy = 9114.7920 kcal/mol (9100.6615 without restraints) Performing minimization step: 1717. Total energy = 9111.0309 kcal/mol (9096.9043 without restraints) Performing minimization step: 1718. Total energy = 9107.2731 kcal/mol (9093.1502 without restraints) Performing minimization step: 1719. Total energy = 9103.5190 kcal/mol (9089.3998 without restraints) Performing minimization step: 1720. Total energy = 9099.7681 kcal/mol (9085.6527 without restraints) Performing minimization step: 1721. Total energy = 9096.0202 kcal/mol (9081.9085 without restraints) Performing minimization step: 1722. Total energy = 9092.2756 kcal/mol (9078.1676 without restraints) Performing minimization step: 1723. Total energy = 9088.5348 kcal/mol (9074.4306 without restraints) Performing minimization step: 1724. Total energy = 9084.7970 kcal/mol (9070.6964 without restraints) Performing minimization step: 1725. Total energy = 9081.0624 kcal/mol (9066.9655 without restraints) Performing minimization step: 1726. Total energy = 9077.3312 kcal/mol (9063.2380 without restraints) Performing minimization step: 1727. Total energy = 9073.6031 kcal/mol (9059.5137 without restraints) Performing minimization step: 1728. Total energy = 9069.8786 kcal/mol (9055.7928 without restraints) Performing minimization step: 1729. Total energy = 9066.1579 kcal/mol (9052.0761 without restraints) Performing minimization step: 1730. Total energy = 9062.4399 kcal/mol (9048.3616 without restraints) Performing minimization step: 1731. Total energy = 9058.7250 kcal/mol (9044.6503 without restraints) Performing minimization step: 1732. Total energy = 9055.0136 kcal/mol (9040.9427 without restraints) Performing minimization step: 1733. Total energy = 9051.3053 kcal/mol (9037.2382 without restraints) Performing minimization step: 1734. Total energy = 9047.6005 kcal/mol (9033.5371 without restraints) Performing minimization step: 1735. Total energy = 9043.8987 kcal/mol (9029.8390 without restraints) Performing minimization step: 1736. Total energy = 9040.2002 kcal/mol (9026.1441 without restraints) Performing minimization step: 1737. Total energy = 9036.5047 kcal/mol (9022.4523 without restraints) Performing minimization step: 1738. Total energy = 9032.8125 kcal/mol (9018.7638 without restraints) Performing minimization step: 1739. Total energy = 9029.1235 kcal/mol (9015.0786 without restraints) Performing minimization step: 1740. Total energy = 9025.4371 kcal/mol (9011.3957 without restraints) Performing minimization step: 1741. Total energy = 9021.7549 kcal/mol (9007.7174 without restraints) Performing minimization step: 1742. Total energy = 9018.0758 kcal/mol (9004.0419 without restraints) Performing minimization step: 1743. Total energy = 9014.3999 kcal/mol (9000.3697 without restraints) Performing minimization step: 1744. Total energy = 9010.7268 kcal/mol (8996.7003 without restraints) Performing minimization step: 1745. Total energy = 9007.0567 kcal/mol (8993.0340 without restraints) Performing minimization step: 1746. Total energy = 9003.3899 kcal/mol (8989.3708 without restraints) Performing minimization step: 1747. Total energy = 8999.7265 kcal/mol (8985.7111 without restraints) Performing minimization step: 1748. Total energy = 8996.0660 kcal/mol (8982.0542 without restraints) Performing minimization step: 1749. Total energy = 8992.4091 kcal/mol (8978.4010 without restraints) Performing minimization step: 1750. Total energy = 8988.7549 kcal/mol (8974.7505 without restraints) Performing minimization step: 1751. Total energy = 8985.1037 kcal/mol (8971.1028 without restraints) Performing minimization step: 1752. Total energy = 8981.4557 kcal/mol (8967.4586 without restraints) Performing minimization step: 1753. Total energy = 8977.8110 kcal/mol (8963.8176 without restraints) Performing minimization step: 1754. Total energy = 8974.1695 kcal/mol (8960.1798 without restraints) Performing minimization step: 1755. Total energy = 8970.5305 kcal/mol (8956.5443 without restraints) Performing minimization step: 1756. Total energy = 8966.8948 kcal/mol (8952.9124 without restraints) Performing minimization step: 1757. Total energy = 8963.2624 kcal/mol (8949.2837 without restraints) Performing minimization step: 1758. Total energy = 8959.6332 kcal/mol (8945.6581 without restraints) Performing minimization step: 1759. Total energy = 8956.0072 kcal/mol (8942.0363 without restraints) Performing minimization step: 1760. Total energy = 8952.3844 kcal/mol (8938.4166 without restraints) Performing minimization step: 1761. Total energy = 8948.7640 kcal/mol (8934.7999 without restraints) Performing minimization step: 1762. Total energy = 8945.1468 kcal/mol (8931.1864 without restraints) Performing minimization step: 1763. Total energy = 8941.5323 kcal/mol (8927.5755 without restraints) Performing minimization step: 1764. Total energy = 8937.9208 kcal/mol (8923.9677 without restraints) Performing minimization step: 1765. Total energy = 8934.3130 kcal/mol (8920.3634 without restraints) Performing minimization step: 1766. Total energy = 8930.7076 kcal/mol (8916.7618 without restraints) Performing minimization step: 1767. Total energy = 8927.1055 kcal/mol (8913.1631 without restraints) Performing minimization step: 1768. Total energy = 8923.5056 kcal/mol (8909.5670 without restraints) Performing minimization step: 1769. Total energy = 8919.9096 kcal/mol (8905.9747 without restraints) Performing minimization step: 1770. Total energy = 8916.3164 kcal/mol (8902.3853 without restraints) Performing minimization step: 1771. Total energy = 8912.7260 kcal/mol (8898.7983 without restraints) Performing minimization step: 1772. Total energy = 8909.1384 kcal/mol (8895.2143 without restraints) Performing minimization step: 1773. Total energy = 8905.5539 kcal/mol (8891.6335 without restraints) Performing minimization step: 1774. Total energy = 8901.9723 kcal/mol (8888.0556 without restraints) Performing minimization step: 1775. Total energy = 8898.3936 kcal/mol (8884.4805 without restraints) Performing minimization step: 1776. Total energy = 8894.8180 kcal/mol (8880.9085 without restraints) Performing minimization step: 1777. Total energy = 8891.2449 kcal/mol (8877.3390 without restraints) Performing minimization step: 1778. Total energy = 8887.6750 kcal/mol (8873.7727 without restraints) Performing minimization step: 1779. Total energy = 8884.1079 kcal/mol (8870.2093 without restraints) Performing minimization step: 1780. Total energy = 8880.5442 kcal/mol (8866.6491 without restraints) Performing minimization step: 1781. Total energy = 8876.9824 kcal/mol (8863.0910 without restraints) Performing minimization step: 1782. Total energy = 8873.4243 kcal/mol (8859.5366 without restraints) Performing minimization step: 1783. Total energy = 8869.8688 kcal/mol (8855.9847 without restraints) Performing minimization step: 1784. Total energy = 8866.3162 kcal/mol (8852.4357 without restraints) Performing minimization step: 1785. Total energy = 8862.7664 kcal/mol (8848.8895 without restraints) Performing minimization step: 1786. Total energy = 8859.2193 kcal/mol (8845.3459 without restraints) Performing minimization step: 1787. Total energy = 8855.6751 kcal/mol (8841.8053 without restraints) Performing minimization step: 1788. Total energy = 8852.1339 kcal/mol (8838.2679 without restraints) Performing minimization step: 1789. Total energy = 8848.5955 kcal/mol (8834.7330 without restraints) Performing minimization step: 1790. Total energy = 8845.0594 kcal/mol (8831.2005 without restraints) Performing minimization step: 1791. Total energy = 8841.5263 kcal/mol (8827.6710 without restraints) Performing minimization step: 1792. Total energy = 8837.9961 kcal/mol (8824.1444 without restraints) Performing minimization step: 1793. Total energy = 8834.4691 kcal/mol (8820.6210 without restraints) Performing minimization step: 1794. Total energy = 8830.9447 kcal/mol (8817.1002 without restraints) Performing minimization step: 1795. Total energy = 8827.4230 kcal/mol (8813.5821 without restraints) Performing minimization step: 1796. Total energy = 8823.9038 kcal/mol (8810.0665 without restraints) Performing minimization step: 1797. Total energy = 8820.3880 kcal/mol (8806.5543 without restraints) Performing minimization step: 1798. Total energy = 8816.8745 kcal/mol (8803.0444 without restraints) Performing minimization step: 1799. Total energy = 8813.3639 kcal/mol (8799.5373 without restraints) Performing minimization step: 1800. Total energy = 8809.8559 kcal/mol (8796.0329 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1801. Total energy = 8806.3503 kcal/mol (8792.5309 without restraints) Performing minimization step: 1802. Total energy = 8802.8480 kcal/mol (8789.0322 without restraints) Performing minimization step: 1803. Total energy = 8799.3488 kcal/mol (8785.5368 without restraints) Performing minimization step: 1804. Total energy = 8795.8520 kcal/mol (8782.0435 without restraints) Performing minimization step: 1805. Total energy = 8792.3579 kcal/mol (8778.5528 without restraints) Performing minimization step: 1806. Total energy = 8788.8661 kcal/mol (8775.0647 without restraints) Performing minimization step: 1807. Total energy = 8785.3773 kcal/mol (8771.5796 without restraints) Performing minimization step: 1808. Total energy = 8781.8914 kcal/mol (8768.0970 without restraints) Performing minimization step: 1809. Total energy = 8778.4078 kcal/mol (8764.6169 without restraints) Performing minimization step: 1810. Total energy = 8774.9267 kcal/mol (8761.1395 without restraints) Performing minimization step: 1811. Total energy = 8771.4483 kcal/mol (8757.6646 without restraints) Performing minimization step: 1812. Total energy = 8767.9718 kcal/mol (8754.1917 without restraints) Performing minimization step: 1813. Total energy = 8764.4988 kcal/mol (8750.7221 without restraints) Performing minimization step: 1814. Total energy = 8761.0281 kcal/mol (8747.2550 without restraints) Performing minimization step: 1815. Total energy = 8757.5608 kcal/mol (8743.7916 without restraints) Performing minimization step: 1816. Total energy = 8754.0962 kcal/mol (8740.3302 without restraints) Performing minimization step: 1817. Total energy = 8750.6335 kcal/mol (8736.8711 without restraints) Performing minimization step: 1818. Total energy = 8747.1737 kcal/mol (8733.4149 without restraints) Performing minimization step: 1819. Total energy = 8743.7164 kcal/mol (8729.9610 without restraints) Performing minimization step: 1820. Total energy = 8740.2619 kcal/mol (8726.5101 without restraints) Performing minimization step: 1821. Total energy = 8736.8097 kcal/mol (8723.0615 without restraints) Performing minimization step: 1822. Total energy = 8733.3601 kcal/mol (8719.6154 without restraints) Performing minimization step: 1823. Total energy = 8729.9130 kcal/mol (8716.1719 without restraints) Performing minimization step: 1824. Total energy = 8726.4686 kcal/mol (8712.7311 without restraints) Performing minimization step: 1825. Total energy = 8723.0273 kcal/mol (8709.2932 without restraints) Performing minimization step: 1826. Total energy = 8719.5877 kcal/mol (8705.8572 without restraints) Performing minimization step: 1827. Total energy = 8716.1506 kcal/mol (8702.4236 without restraints) Performing minimization step: 1828. Total energy = 8712.7164 kcal/mol (8698.9929 without restraints) Performing minimization step: 1829. Total energy = 8709.2846 kcal/mol (8695.5646 without restraints) Performing minimization step: 1830. Total energy = 8705.8555 kcal/mol (8692.1390 without restraints) Performing minimization step: 1831. Total energy = 8702.4286 kcal/mol (8688.7156 without restraints) Performing minimization step: 1832. Total energy = 8699.0039 kcal/mol (8685.2944 without restraints) Performing minimization step: 1833. Total energy = 8695.5820 kcal/mol (8681.8760 without restraints) Performing minimization step: 1834. Total energy = 8692.1626 kcal/mol (8678.4603 without restraints) Performing minimization step: 1835. Total energy = 8688.7457 kcal/mol (8675.0468 without restraints) Performing minimization step: 1836. Total energy = 8685.3312 kcal/mol (8671.6358 without restraints) Performing minimization step: 1837. Total energy = 8681.9189 kcal/mol (8668.2270 without restraints) Performing minimization step: 1838. Total energy = 8678.5095 kcal/mol (8664.8211 without restraints) Performing minimization step: 1839. Total energy = 8675.1024 kcal/mol (8661.4175 without restraints) Performing minimization step: 1840. Total energy = 8671.6978 kcal/mol (8658.0164 without restraints) Performing minimization step: 1841. Total energy = 8668.2953 kcal/mol (8654.6175 without restraints) Performing minimization step: 1842. Total energy = 8664.8955 kcal/mol (8651.2211 without restraints) Performing minimization step: 1843. Total energy = 8661.4980 kcal/mol (8647.8271 without restraints) Performing minimization step: 1844. Total energy = 8658.1024 kcal/mol (8644.4351 without restraints) Performing minimization step: 1845. Total energy = 8654.7095 kcal/mol (8641.0455 without restraints) Performing minimization step: 1846. Total energy = 8651.3191 kcal/mol (8637.6587 without restraints) Performing minimization step: 1847. Total energy = 8647.9314 kcal/mol (8634.2744 without restraints) Performing minimization step: 1848. Total energy = 8644.5458 kcal/mol (8630.8924 without restraints) Performing minimization step: 1849. Total energy = 8641.1628 kcal/mol (8627.5126 without restraints) Performing minimization step: 1850. Total energy = 8637.7820 kcal/mol (8624.1355 without restraints) Performing minimization step: 1851. Total energy = 8634.4035 kcal/mol (8620.7605 without restraints) Performing minimization step: 1852. Total energy = 8631.0278 kcal/mol (8617.3882 without restraints) Performing minimization step: 1853. Total energy = 8627.6540 kcal/mol (8614.0179 without restraints) Performing minimization step: 1854. Total energy = 8624.2824 kcal/mol (8610.6498 without restraints) Performing minimization step: 1855. Total energy = 8620.9127 kcal/mol (8607.2835 without restraints) Performing minimization step: 1856. Total energy = 8617.5458 kcal/mol (8603.9200 without restraints) Performing minimization step: 1857. Total energy = 8614.1814 kcal/mol (8600.5591 without restraints) Performing minimization step: 1858. Total energy = 8610.8194 kcal/mol (8597.2006 without restraints) Performing minimization step: 1859. Total energy = 8607.4598 kcal/mol (8593.8445 without restraints) Performing minimization step: 1860. Total energy = 8604.1024 kcal/mol (8590.4905 without restraints) Performing minimization step: 1861. Total energy = 8600.7470 kcal/mol (8587.1385 without restraints) Performing minimization step: 1862. Total energy = 8597.3941 kcal/mol (8583.7892 without restraints) Performing minimization step: 1863. Total energy = 8594.0438 kcal/mol (8580.4425 without restraints) Performing minimization step: 1864. Total energy = 8590.6956 kcal/mol (8577.0975 without restraints) Performing minimization step: 1865. Total energy = 8587.3491 kcal/mol (8573.7545 without restraints) Performing minimization step: 1866. Total energy = 8584.0053 kcal/mol (8570.4141 without restraints) Performing minimization step: 1867. Total energy = 8580.6634 kcal/mol (8567.0757 without restraints) Performing minimization step: 1868. Total energy = 8577.3239 kcal/mol (8563.7396 without restraints) Performing minimization step: 1869. Total energy = 8573.9868 kcal/mol (8560.4059 without restraints) Performing minimization step: 1870. Total energy = 8570.6518 kcal/mol (8557.0746 without restraints) Performing minimization step: 1871. Total energy = 8567.3196 kcal/mol (8553.7456 without restraints) Performing minimization step: 1872. Total energy = 8563.9891 kcal/mol (8550.4186 without restraints) Performing minimization step: 1873. Total energy = 8560.6601 kcal/mol (8547.0930 without restraints) Performing minimization step: 1874. Total energy = 8557.3340 kcal/mol (8543.7703 without restraints) Performing minimization step: 1875. Total energy = 8554.0098 kcal/mol (8540.4494 without restraints) Performing minimization step: 1876. Total energy = 8550.6878 kcal/mol (8537.1309 without restraints) Performing minimization step: 1877. Total energy = 8547.3679 kcal/mol (8533.8144 without restraints) Performing minimization step: 1878. Total energy = 8544.0503 kcal/mol (8530.5002 without restraints) Performing minimization step: 1879. Total energy = 8540.7348 kcal/mol (8527.1882 without restraints) Performing minimization step: 1880. Total energy = 8537.4215 kcal/mol (8523.8783 without restraints) Performing minimization step: 1881. Total energy = 8534.1101 kcal/mol (8520.5703 without restraints) Performing minimization step: 1882. Total energy = 8530.8011 kcal/mol (8517.2647 without restraints) Performing minimization step: 1883. Total energy = 8527.4942 kcal/mol (8513.9612 without restraints) Performing minimization step: 1884. Total energy = 8524.1894 kcal/mol (8510.6598 without restraints) Performing minimization step: 1885. Total energy = 8520.8872 kcal/mol (8507.3610 without restraints) Performing minimization step: 1886. Total energy = 8517.5872 kcal/mol (8504.0644 without restraints) Performing minimization step: 1887. Total energy = 8514.2890 kcal/mol (8500.7696 without restraints) Performing minimization step: 1888. Total energy = 8510.9929 kcal/mol (8497.4769 without restraints) Performing minimization step: 1889. Total energy = 8507.6987 kcal/mol (8494.1860 without restraints) Performing minimization step: 1890. Total energy = 8504.4069 kcal/mol (8490.8977 without restraints) Performing minimization step: 1891. Total energy = 8501.1170 kcal/mol (8487.6112 without restraints) Performing minimization step: 1892. Total energy = 8497.8290 kcal/mol (8484.3266 without restraints) Performing minimization step: 1893. Total energy = 8494.5428 kcal/mol (8481.0437 without restraints) Performing minimization step: 1894. Total energy = 8491.2591 kcal/mol (8477.7636 without restraints) Performing minimization step: 1895. Total energy = 8487.9776 kcal/mol (8474.4852 without restraints) Performing minimization step: 1896. Total energy = 8484.6979 kcal/mol (8471.2089 without restraints) Performing minimization step: 1897. Total energy = 8481.4204 kcal/mol (8467.9348 without restraints) Performing minimization step: 1898. Total energy = 8478.1450 kcal/mol (8464.6628 without restraints) Performing minimization step: 1899. Total energy = 8474.8714 kcal/mol (8461.3925 without restraints) Performing minimization step: 1900. Total energy = 8471.5998 kcal/mol (8458.1243 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 1901. Total energy = 8468.3301 kcal/mol (8454.8579 without restraints) Performing minimization step: 1902. Total energy = 8465.0627 kcal/mol (8451.5940 without restraints) Performing minimization step: 1903. Total energy = 8461.7973 kcal/mol (8448.3320 without restraints) Performing minimization step: 1904. Total energy = 8458.5338 kcal/mol (8445.0718 without restraints) Performing minimization step: 1905. Total energy = 8455.2722 kcal/mol (8441.8134 without restraints) Performing minimization step: 1906. Total energy = 8452.0127 kcal/mol (8438.5574 without restraints) Performing minimization step: 1907. Total energy = 8448.7551 kcal/mol (8435.3032 without restraints) Performing minimization step: 1908. Total energy = 8445.5001 kcal/mol (8432.0515 without restraints) Performing minimization step: 1909. Total energy = 8442.2465 kcal/mol (8428.8012 without restraints) Performing minimization step: 1910. Total energy = 8438.9948 kcal/mol (8425.5529 without restraints) Performing minimization step: 1911. Total energy = 8435.7450 kcal/mol (8422.3063 without restraints) Performing minimization step: 1912. Total energy = 8432.4974 kcal/mol (8419.0621 without restraints) Performing minimization step: 1913. Total energy = 8429.2513 kcal/mol (8415.8195 without restraints) Performing minimization step: 1914. Total energy = 8426.0077 kcal/mol (8412.5792 without restraints) Performing minimization step: 1915. Total energy = 8422.7660 kcal/mol (8409.3407 without restraints) Performing minimization step: 1916. Total energy = 8419.5261 kcal/mol (8406.1041 without restraints) Performing minimization step: 1917. Total energy = 8416.2879 kcal/mol (8402.8693 without restraints) Performing minimization step: 1918. Total energy = 8413.0518 kcal/mol (8399.6365 without restraints) Performing minimization step: 1919. Total energy = 8409.8178 kcal/mol (8396.4059 without restraints) Performing minimization step: 1920. Total energy = 8406.5856 kcal/mol (8393.1770 without restraints) Performing minimization step: 1921. Total energy = 8403.3552 kcal/mol (8389.9500 without restraints) Performing minimization step: 1922. Total energy = 8400.1270 kcal/mol (8386.7250 without restraints) Performing minimization step: 1923. Total energy = 8396.9006 kcal/mol (8383.5021 without restraints) Performing minimization step: 1924. Total energy = 8393.6763 kcal/mol (8380.2810 without restraints) Performing minimization step: 1925. Total energy = 8390.4544 kcal/mol (8377.0624 without restraints) Performing minimization step: 1926. Total energy = 8387.2334 kcal/mol (8373.8447 without restraints) Performing minimization step: 1927. Total energy = 8384.0144 kcal/mol (8370.6289 without restraints) Performing minimization step: 1928. Total energy = 8380.7973 kcal/mol (8367.4152 without restraints) Performing minimization step: 1929. Total energy = 8377.5819 kcal/mol (8364.2031 without restraints) Performing minimization step: 1930. Total energy = 8374.3686 kcal/mol (8360.9931 without restraints) Performing minimization step: 1931. Total energy = 8371.1573 kcal/mol (8357.7851 without restraints) Performing minimization step: 1932. Total energy = 8367.9480 kcal/mol (8354.5791 without restraints) Performing minimization step: 1933. Total energy = 8364.7405 kcal/mol (8351.3749 without restraints) Performing minimization step: 1934. Total energy = 8361.5349 kcal/mol (8348.1727 without restraints) Performing minimization step: 1935. Total energy = 8358.3310 kcal/mol (8344.9719 without restraints) Performing minimization step: 1936. Total energy = 8355.1287 kcal/mol (8341.7729 without restraints) Performing minimization step: 1937. Total energy = 8351.9282 kcal/mol (8338.5756 without restraints) Performing minimization step: 1938. Total energy = 8348.7295 kcal/mol (8335.3803 without restraints) Performing minimization step: 1939. Total energy = 8345.5327 kcal/mol (8332.1868 without restraints) Performing minimization step: 1940. Total energy = 8342.3381 kcal/mol (8328.9956 without restraints) Performing minimization step: 1941. Total energy = 8339.1453 kcal/mol (8325.8061 without restraints) Performing minimization step: 1942. Total energy = 8335.9539 kcal/mol (8322.6179 without restraints) Performing minimization step: 1943. Total energy = 8332.7643 kcal/mol (8319.4315 without restraints) Performing minimization step: 1944. Total energy = 8329.5766 kcal/mol (8316.2472 without restraints) Performing minimization step: 1945. Total energy = 8326.3909 kcal/mol (8313.0646 without restraints) Performing minimization step: 1946. Total energy = 8323.2061 kcal/mol (8309.8831 without restraints) Performing minimization step: 1947. Total energy = 8320.0237 kcal/mol (8306.7040 without restraints) Performing minimization step: 1948. Total energy = 8316.8432 kcal/mol (8303.5268 without restraints) Performing minimization step: 1949. Total energy = 8313.6646 kcal/mol (8300.3513 without restraints) Performing minimization step: 1950. Total energy = 8310.4875 kcal/mol (8297.1776 without restraints) Performing minimization step: 1951. Total energy = 8307.3124 kcal/mol (8294.0057 without restraints) Performing minimization step: 1952. Total energy = 8304.1388 kcal/mol (8290.8354 without restraints) Performing minimization step: 1953. Total energy = 8300.9668 kcal/mol (8287.6666 without restraints) Performing minimization step: 1954. Total energy = 8297.7975 kcal/mol (8284.5008 without restraints) Performing minimization step: 1955. Total energy = 8294.6295 kcal/mol (8281.3358 without restraints) Performing minimization step: 1956. Total energy = 8291.4632 kcal/mol (8278.1728 without restraints) Performing minimization step: 1957. Total energy = 8288.2988 kcal/mol (8275.0116 without restraints) Performing minimization step: 1958. Total energy = 8285.1363 kcal/mol (8271.8524 without restraints) Performing minimization step: 1959. Total energy = 8281.9753 kcal/mol (8268.6946 without restraints) Performing minimization step: 1960. Total energy = 8278.8160 kcal/mol (8265.5387 without restraints) Performing minimization step: 1961. Total energy = 8275.6584 kcal/mol (8262.3841 without restraints) Performing minimization step: 1962. Total energy = 8272.5028 kcal/mol (8259.2320 without restraints) Performing minimization step: 1963. Total energy = 8269.3490 kcal/mol (8256.0813 without restraints) Performing minimization step: 1964. Total energy = 8266.1968 kcal/mol (8252.9323 without restraints) Performing minimization step: 1965. Total energy = 8263.0465 kcal/mol (8249.7852 without restraints) Performing minimization step: 1966. Total energy = 8259.8973 kcal/mol (8246.6392 without restraints) Performing minimization step: 1967. Total energy = 8256.7504 kcal/mol (8243.4955 without restraints) Performing minimization step: 1968. Total energy = 8253.6045 kcal/mol (8240.3528 without restraints) Performing minimization step: 1969. Total energy = 8250.4610 kcal/mol (8237.2125 without restraints) Performing minimization step: 1970. Total energy = 8247.3190 kcal/mol (8234.0739 without restraints) Performing minimization step: 1971. Total energy = 8244.1793 kcal/mol (8230.9373 without restraints) Performing minimization step: 1972. Total energy = 8241.0407 kcal/mol (8227.8019 without restraints) Performing minimization step: 1973. Total energy = 8237.9038 kcal/mol (8224.6682 without restraints) Performing minimization step: 1974. Total energy = 8234.7687 kcal/mol (8221.5363 without restraints) Performing minimization step: 1975. Total energy = 8231.6353 kcal/mol (8218.4061 without restraints) Performing minimization step: 1976. Total energy = 8228.5033 kcal/mol (8215.2774 without restraints) Performing minimization step: 1977. Total energy = 8225.3734 kcal/mol (8212.1506 without restraints) Performing minimization step: 1978. Total energy = 8222.2449 kcal/mol (8209.0254 without restraints) Performing minimization step: 1979. Total energy = 8219.1179 kcal/mol (8205.9016 without restraints) Performing minimization step: 1980. Total energy = 8215.9926 kcal/mol (8202.7794 without restraints) Performing minimization step: 1981. Total energy = 8212.8690 kcal/mol (8199.6590 without restraints) Performing minimization step: 1982. Total energy = 8209.7472 kcal/mol (8196.5404 without restraints) Performing minimization step: 1983. Total energy = 8206.6270 kcal/mol (8193.4234 without restraints) Performing minimization step: 1984. Total energy = 8203.5088 kcal/mol (8190.3084 without restraints) Performing minimization step: 1985. Total energy = 8200.3922 kcal/mol (8187.1951 without restraints) Performing minimization step: 1986. Total energy = 8197.2775 kcal/mol (8184.0834 without restraints) Performing minimization step: 1987. Total energy = 8194.1643 kcal/mol (8180.9734 without restraints) Performing minimization step: 1988. Total energy = 8191.0528 kcal/mol (8177.8652 without restraints) Performing minimization step: 1989. Total energy = 8187.9425 kcal/mol (8174.7580 without restraints) Performing minimization step: 1990. Total energy = 8184.8341 kcal/mol (8171.6528 without restraints) Performing minimization step: 1991. Total energy = 8181.7274 kcal/mol (8168.5493 without restraints) Performing minimization step: 1992. Total energy = 8178.6225 kcal/mol (8165.4476 without restraints) Performing minimization step: 1993. Total energy = 8175.5192 kcal/mol (8162.3474 without restraints) Performing minimization step: 1994. Total energy = 8172.4174 kcal/mol (8159.2488 without restraints) Performing minimization step: 1995. Total energy = 8169.3172 kcal/mol (8156.1518 without restraints) Performing minimization step: 1996. Total energy = 8166.2185 kcal/mol (8153.0562 without restraints) Performing minimization step: 1997. Total energy = 8163.1218 kcal/mol (8149.9626 without restraints) Performing minimization step: 1998. Total energy = 8160.0264 kcal/mol (8146.8705 without restraints) Performing minimization step: 1999. Total energy = 8156.9329 kcal/mol (8143.7801 without restraints) Performing minimization step: 2000. Total energy = 8153.8411 kcal/mol (8140.6915 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2001. Total energy = 8150.7512 kcal/mol (8137.6048 without restraints) Performing minimization step: 2002. Total energy = 8147.6626 kcal/mol (8134.5192 without restraints) Performing minimization step: 2003. Total energy = 8144.5753 kcal/mol (8131.4351 without restraints) Performing minimization step: 2004. Total energy = 8141.4903 kcal/mol (8128.3533 without restraints) Performing minimization step: 2005. Total energy = 8138.4067 kcal/mol (8125.2728 without restraints) Performing minimization step: 2006. Total energy = 8135.3250 kcal/mol (8122.1944 without restraints) Performing minimization step: 2007. Total energy = 8132.2447 kcal/mol (8119.1171 without restraints) Performing minimization step: 2008. Total energy = 8129.1658 kcal/mol (8116.0413 without restraints) Performing minimization step: 2009. Total energy = 8126.0888 kcal/mol (8112.9675 without restraints) Performing minimization step: 2010. Total energy = 8123.0141 kcal/mol (8109.8964 without restraints) Performing minimization step: 2011. Total energy = 8119.9405 kcal/mol (8106.8255 without restraints) Performing minimization step: 2012. Total energy = 8116.8680 kcal/mol (8103.7563 without restraints) Performing minimization step: 2013. Total energy = 8113.7973 kcal/mol (8100.6886 without restraints) Performing minimization step: 2014. Total energy = 8110.7283 kcal/mol (8097.6227 without restraints) Performing minimization step: 2015. Total energy = 8107.6607 kcal/mol (8094.5582 without restraints) Performing minimization step: 2016. Total energy = 8104.5946 kcal/mol (8091.4952 without restraints) Performing minimization step: 2017. Total energy = 8101.5297 kcal/mol (8088.4333 without restraints) Performing minimization step: 2018. Total energy = 8098.4668 kcal/mol (8085.3737 without restraints) Performing minimization step: 2019. Total energy = 8095.4057 kcal/mol (8082.3158 without restraints) Performing minimization step: 2020. Total energy = 8092.3465 kcal/mol (8079.2596 without restraints) Performing minimization step: 2021. Total energy = 8089.2891 kcal/mol (8076.2053 without restraints) Performing minimization step: 2022. Total energy = 8086.2334 kcal/mol (8073.1528 without restraints) Performing minimization step: 2023. Total energy = 8083.1782 kcal/mol (8070.1007 without restraints) Performing minimization step: 2024. Total energy = 8080.1252 kcal/mol (8067.0508 without restraints) Performing minimization step: 2025. Total energy = 8077.0736 kcal/mol (8064.0023 without restraints) Performing minimization step: 2026. Total energy = 8074.0236 kcal/mol (8060.9555 without restraints) Performing minimization step: 2027. Total energy = 8070.9752 kcal/mol (8057.9102 without restraints) Performing minimization step: 2028. Total energy = 8067.9288 kcal/mol (8054.8669 without restraints) Performing minimization step: 2029. Total energy = 8064.8839 kcal/mol (8051.8252 without restraints) Performing minimization step: 2030. Total energy = 8061.8404 kcal/mol (8048.7846 without restraints) Performing minimization step: 2031. Total energy = 8058.7983 kcal/mol (8045.7456 without restraints) Performing minimization step: 2032. Total energy = 8055.7584 kcal/mol (8042.7091 without restraints) Performing minimization step: 2033. Total energy = 8052.7197 kcal/mol (8039.6732 without restraints) Performing minimization step: 2034. Total energy = 8049.6825 kcal/mol (8036.6391 without restraints) Performing minimization step: 2035. Total energy = 8046.6468 kcal/mol (8033.6066 without restraints) Performing minimization step: 2036. Total energy = 8043.6125 kcal/mol (8030.5753 without restraints) Performing minimization step: 2037. Total energy = 8040.5797 kcal/mol (8027.5456 without restraints) Performing minimization step: 2038. Total energy = 8037.5486 kcal/mol (8024.5176 without restraints) Performing minimization step: 2039. Total energy = 8034.5193 kcal/mol (8021.4914 without restraints) Performing minimization step: 2040. Total energy = 8031.4916 kcal/mol (8018.4668 without restraints) Performing minimization step: 2041. Total energy = 8028.4653 kcal/mol (8015.4435 without restraints) Performing minimization step: 2042. Total energy = 8025.4404 kcal/mol (8012.4218 without restraints) Performing minimization step: 2043. Total energy = 8022.4173 kcal/mol (8009.4018 without restraints) Performing minimization step: 2044. Total energy = 8019.3958 kcal/mol (8006.3832 without restraints) Performing minimization step: 2045. Total energy = 8016.3755 kcal/mol (8003.3662 without restraints) Performing minimization step: 2046. Total energy = 8013.3572 kcal/mol (8000.3508 without restraints) Performing minimization step: 2047. Total energy = 8010.3404 kcal/mol (7997.3371 without restraints) Performing minimization step: 2048. Total energy = 8007.3252 kcal/mol (7994.3250 without restraints) Performing minimization step: 2049. Total energy = 8004.3113 kcal/mol (7991.3141 without restraints) Performing minimization step: 2050. Total energy = 8001.2989 kcal/mol (7988.3048 without restraints) Performing minimization step: 2051. Total energy = 7998.2882 kcal/mol (7985.2973 without restraints) Performing minimization step: 2052. Total energy = 7995.2791 kcal/mol (7982.2911 without restraints) Performing minimization step: 2053. Total energy = 7992.2710 kcal/mol (7979.2862 without restraints) Performing minimization step: 2054. Total energy = 7989.2650 kcal/mol (7976.2831 without restraints) Performing minimization step: 2055. Total energy = 7986.2604 kcal/mol (7973.2815 without restraints) Performing minimization step: 2056. Total energy = 7983.2574 kcal/mol (7970.2816 without restraints) Performing minimization step: 2057. Total energy = 7980.2558 kcal/mol (7967.2832 without restraints) Performing minimization step: 2058. Total energy = 7977.2562 kcal/mol (7964.2866 without restraints) Performing minimization step: 2059. Total energy = 7974.2576 kcal/mol (7961.2908 without restraints) Performing minimization step: 2060. Total energy = 7971.2607 kcal/mol (7958.2971 without restraints) Performing minimization step: 2061. Total energy = 7968.2650 kcal/mol (7955.3045 without restraints) Performing minimization step: 2062. Total energy = 7965.2712 kcal/mol (7952.3137 without restraints) Performing minimization step: 2063. Total energy = 7962.2790 kcal/mol (7949.3246 without restraints) Performing minimization step: 2064. Total energy = 7959.2881 kcal/mol (7946.3367 without restraints) Performing minimization step: 2065. Total energy = 7956.2989 kcal/mol (7943.3505 without restraints) Performing minimization step: 2066. Total energy = 7953.3110 kcal/mol (7940.3657 without restraints) Performing minimization step: 2067. Total energy = 7950.3247 kcal/mol (7937.3824 without restraints) Performing minimization step: 2068. Total energy = 7947.3398 kcal/mol (7934.4006 without restraints) Performing minimization step: 2069. Total energy = 7944.3568 kcal/mol (7931.4206 without restraints) Performing minimization step: 2070. Total energy = 7941.3751 kcal/mol (7928.4418 without restraints) Performing minimization step: 2071. Total energy = 7938.3950 kcal/mol (7925.4648 without restraints) Performing minimization step: 2072. Total energy = 7935.4162 kcal/mol (7922.4891 without restraints) Performing minimization step: 2073. Total energy = 7932.4391 kcal/mol (7919.5151 without restraints) Performing minimization step: 2074. Total energy = 7929.4641 kcal/mol (7916.5430 without restraints) Performing minimization step: 2075. Total energy = 7926.4904 kcal/mol (7913.5723 without restraints) Performing minimization step: 2076. Total energy = 7923.5179 kcal/mol (7910.6028 without restraints) Performing minimization step: 2077. Total energy = 7920.5464 kcal/mol (7907.6344 without restraints) Performing minimization step: 2078. Total energy = 7917.5767 kcal/mol (7904.6677 without restraints) Performing minimization step: 2079. Total energy = 7914.6084 kcal/mol (7901.7024 without restraints) Performing minimization step: 2080. Total energy = 7911.6421 kcal/mol (7898.7390 without restraints) Performing minimization step: 2081. Total energy = 7908.6767 kcal/mol (7895.7766 without restraints) Performing minimization step: 2082. Total energy = 7905.7130 kcal/mol (7892.8161 without restraints) Performing minimization step: 2083. Total energy = 7902.7510 kcal/mol (7889.8571 without restraints) Performing minimization step: 2084. Total energy = 7899.7904 kcal/mol (7886.8995 without restraints) Performing minimization step: 2085. Total energy = 7896.8317 kcal/mol (7883.9437 without restraints) Performing minimization step: 2086. Total energy = 7893.8739 kcal/mol (7880.9889 without restraints) Performing minimization step: 2087. Total energy = 7890.9176 kcal/mol (7878.0355 without restraints) Performing minimization step: 2088. Total energy = 7887.9625 kcal/mol (7875.0835 without restraints) Performing minimization step: 2089. Total energy = 7885.0089 kcal/mol (7872.1329 without restraints) Performing minimization step: 2090. Total energy = 7882.0571 kcal/mol (7869.1840 without restraints) Performing minimization step: 2091. Total energy = 7879.1068 kcal/mol (7866.2368 without restraints) Performing minimization step: 2092. Total energy = 7876.1582 kcal/mol (7863.2912 without restraints) Performing minimization step: 2093. Total energy = 7873.2106 kcal/mol (7860.3465 without restraints) Performing minimization step: 2094. Total energy = 7870.2646 kcal/mol (7857.4035 without restraints) Performing minimization step: 2095. Total energy = 7867.3200 kcal/mol (7854.4619 without restraints) Performing minimization step: 2096. Total energy = 7864.3769 kcal/mol (7851.5217 without restraints) Performing minimization step: 2097. Total energy = 7861.4352 kcal/mol (7848.5830 without restraints) Performing minimization step: 2098. Total energy = 7858.4948 kcal/mol (7845.6456 without restraints) Performing minimization step: 2099. Total energy = 7855.5560 kcal/mol (7842.7098 without restraints) Performing minimization step: 2100. Total energy = 7852.6187 kcal/mol (7839.7755 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2101. Total energy = 7849.6832 kcal/mol (7836.8430 without restraints) Performing minimization step: 2102. Total energy = 7846.7489 kcal/mol (7833.9116 without restraints) Performing minimization step: 2103. Total energy = 7843.8161 kcal/mol (7830.9817 without restraints) Performing minimization step: 2104. Total energy = 7840.8846 kcal/mol (7828.0532 without restraints) Performing minimization step: 2105. Total energy = 7837.9547 kcal/mol (7825.1266 without restraints) Performing minimization step: 2106. Total energy = 7835.0267 kcal/mol (7822.2013 without restraints) Performing minimization step: 2107. Total energy = 7832.0996 kcal/mol (7819.2771 without restraints) Performing minimization step: 2108. Total energy = 7829.1740 kcal/mol (7816.3547 without restraints) Performing minimization step: 2109. Total energy = 7826.2498 kcal/mol (7813.4332 without restraints) Performing minimization step: 2110. Total energy = 7823.3270 kcal/mol (7810.5134 without restraints) Performing minimization step: 2111. Total energy = 7820.4058 kcal/mol (7807.5951 without restraints) Performing minimization step: 2112. Total energy = 7817.4861 kcal/mol (7804.6784 without restraints) Performing minimization step: 2113. Total energy = 7814.5674 kcal/mol (7801.7627 without restraints) Performing minimization step: 2114. Total energy = 7811.6502 kcal/mol (7798.8483 without restraints) Performing minimization step: 2115. Total energy = 7808.7349 kcal/mol (7795.9360 without restraints) Performing minimization step: 2116. Total energy = 7805.8204 kcal/mol (7793.0245 without restraints) Performing minimization step: 2117. Total energy = 7802.9073 kcal/mol (7790.1143 without restraints) Performing minimization step: 2118. Total energy = 7799.9958 kcal/mol (7787.2059 without restraints) Performing minimization step: 2119. Total energy = 7797.0857 kcal/mol (7784.2986 without restraints) Performing minimization step: 2120. Total energy = 7794.1769 kcal/mol (7781.3927 without restraints) Performing minimization step: 2121. Total energy = 7791.2697 kcal/mol (7778.4885 without restraints) Performing minimization step: 2122. Total energy = 7788.3637 kcal/mol (7775.5853 without restraints) Performing minimization step: 2123. Total energy = 7785.4591 kcal/mol (7772.6836 without restraints) Performing minimization step: 2124. Total energy = 7782.5558 kcal/mol (7769.7833 without restraints) Performing minimization step: 2125. Total energy = 7779.6543 kcal/mol (7766.8848 without restraints) Performing minimization step: 2126. Total energy = 7776.7540 kcal/mol (7763.9874 without restraints) Performing minimization step: 2127. Total energy = 7773.8548 kcal/mol (7761.0911 without restraints) Performing minimization step: 2128. Total energy = 7770.9572 kcal/mol (7758.1965 without restraints) Performing minimization step: 2129. Total energy = 7768.0610 kcal/mol (7755.3033 without restraints) Performing minimization step: 2130. Total energy = 7765.1657 kcal/mol (7752.4108 without restraints) Performing minimization step: 2131. Total energy = 7762.2722 kcal/mol (7749.5202 without restraints) Performing minimization step: 2132. Total energy = 7759.3801 kcal/mol (7746.6309 without restraints) Performing minimization step: 2133. Total energy = 7756.4895 kcal/mol (7743.7432 without restraints) Performing minimization step: 2134. Total energy = 7753.6000 kcal/mol (7740.8567 without restraints) Performing minimization step: 2135. Total energy = 7750.7119 kcal/mol (7737.9715 without restraints) Performing minimization step: 2136. Total energy = 7747.8257 kcal/mol (7735.0882 without restraints) Performing minimization step: 2137. Total energy = 7744.9401 kcal/mol (7732.2055 without restraints) Performing minimization step: 2138. Total energy = 7742.0565 kcal/mol (7729.3247 without restraints) Performing minimization step: 2139. Total energy = 7739.1735 kcal/mol (7726.4446 without restraints) Performing minimization step: 2140. Total energy = 7736.2922 kcal/mol (7723.5662 without restraints) Performing minimization step: 2141. Total energy = 7733.4122 kcal/mol (7720.6892 without restraints) Performing minimization step: 2142. Total energy = 7730.5338 kcal/mol (7717.8137 without restraints) Performing minimization step: 2143. Total energy = 7727.6565 kcal/mol (7714.9392 without restraints) Performing minimization step: 2144. Total energy = 7724.7805 kcal/mol (7712.0661 without restraints) Performing minimization step: 2145. Total energy = 7721.9060 kcal/mol (7709.1944 without restraints) Performing minimization step: 2146. Total energy = 7719.0326 kcal/mol (7706.3240 without restraints) Performing minimization step: 2147. Total energy = 7716.1606 kcal/mol (7703.4549 without restraints) Performing minimization step: 2148. Total energy = 7713.2900 kcal/mol (7700.5871 without restraints) Performing minimization step: 2149. Total energy = 7710.4202 kcal/mol (7697.7204 without restraints) Performing minimization step: 2150. Total energy = 7707.5518 kcal/mol (7694.8547 without restraints) Performing minimization step: 2151. Total energy = 7704.6849 kcal/mol (7691.9907 without restraints) Performing minimization step: 2152. Total energy = 7701.8197 kcal/mol (7689.1283 without restraints) Performing minimization step: 2153. Total energy = 7698.9555 kcal/mol (7686.2670 without restraints) Performing minimization step: 2154. Total energy = 7696.0927 kcal/mol (7683.4071 without restraints) Performing minimization step: 2155. Total energy = 7693.2321 kcal/mol (7680.5493 without restraints) Performing minimization step: 2156. Total energy = 7690.3719 kcal/mol (7677.6922 without restraints) Performing minimization step: 2157. Total energy = 7687.5132 kcal/mol (7674.8362 without restraints) Performing minimization step: 2158. Total energy = 7684.6556 kcal/mol (7671.9815 without restraints) Performing minimization step: 2159. Total energy = 7681.7998 kcal/mol (7669.1285 without restraints) Performing minimization step: 2160. Total energy = 7678.9448 kcal/mol (7666.2764 without restraints) Performing minimization step: 2161. Total energy = 7676.0911 kcal/mol (7663.4256 without restraints) Performing minimization step: 2162. Total energy = 7673.2385 kcal/mol (7660.5758 without restraints) Performing minimization step: 2163. Total energy = 7670.3875 kcal/mol (7657.7276 without restraints) Performing minimization step: 2164. Total energy = 7667.5378 kcal/mol (7654.8808 without restraints) Performing minimization step: 2165. Total energy = 7664.6893 kcal/mol (7652.0351 without restraints) Performing minimization step: 2166. Total energy = 7661.8428 kcal/mol (7649.1914 without restraints) Performing minimization step: 2167. Total energy = 7658.9971 kcal/mol (7646.3485 without restraints) Performing minimization step: 2168. Total energy = 7656.1524 kcal/mol (7643.5068 without restraints) Performing minimization step: 2169. Total energy = 7653.3089 kcal/mol (7640.6661 without restraints) Performing minimization step: 2170. Total energy = 7650.4668 kcal/mol (7637.8269 without restraints) Performing minimization step: 2171. Total energy = 7647.6260 kcal/mol (7634.9888 without restraints) Performing minimization step: 2172. Total energy = 7644.7863 kcal/mol (7632.1519 without restraints) Performing minimization step: 2173. Total energy = 7641.9478 kcal/mol (7629.3163 without restraints) Performing minimization step: 2174. Total energy = 7639.1110 kcal/mol (7626.4823 without restraints) Performing minimization step: 2175. Total energy = 7636.2748 kcal/mol (7623.6489 without restraints) Performing minimization step: 2176. Total energy = 7633.4402 kcal/mol (7620.8172 without restraints) Performing minimization step: 2177. Total energy = 7630.6071 kcal/mol (7617.9868 without restraints) Performing minimization step: 2178. Total energy = 7627.7744 kcal/mol (7615.1570 without restraints) Performing minimization step: 2179. Total energy = 7624.9437 kcal/mol (7612.3291 without restraints) Performing minimization step: 2180. Total energy = 7622.1142 kcal/mol (7609.5025 without restraints) Performing minimization step: 2181. Total energy = 7619.2858 kcal/mol (7606.6770 without restraints) Performing minimization step: 2182. Total energy = 7616.4589 kcal/mol (7603.8527 without restraints) Performing minimization step: 2183. Total energy = 7613.6328 kcal/mol (7601.0295 without restraints) Performing minimization step: 2184. Total energy = 7610.8081 kcal/mol (7598.2076 without restraints) Performing minimization step: 2185. Total energy = 7607.9848 kcal/mol (7595.3872 without restraints) Performing minimization step: 2186. Total energy = 7605.1625 kcal/mol (7592.5676 without restraints) Performing minimization step: 2187. Total energy = 7602.3411 kcal/mol (7589.7490 without restraints) Performing minimization step: 2188. Total energy = 7599.5212 kcal/mol (7586.9318 without restraints) Performing minimization step: 2189. Total energy = 7596.7027 kcal/mol (7584.1162 without restraints) Performing minimization step: 2190. Total energy = 7593.8852 kcal/mol (7581.3015 without restraints) Performing minimization step: 2191. Total energy = 7591.0697 kcal/mol (7578.4888 without restraints) Performing minimization step: 2192. Total energy = 7588.2552 kcal/mol (7575.6771 without restraints) Performing minimization step: 2193. Total energy = 7585.4414 kcal/mol (7572.8660 without restraints) Performing minimization step: 2194. Total energy = 7582.6289 kcal/mol (7570.0563 without restraints) Performing minimization step: 2195. Total energy = 7579.8178 kcal/mol (7567.2480 without restraints) Performing minimization step: 2196. Total energy = 7577.0070 kcal/mol (7564.4400 without restraints) Performing minimization step: 2197. Total energy = 7574.1982 kcal/mol (7561.6341 without restraints) Performing minimization step: 2198. Total energy = 7571.3900 kcal/mol (7558.8286 without restraints) Performing minimization step: 2199. Total energy = 7568.5834 kcal/mol (7556.0248 without restraints) Performing minimization step: 2200. Total energy = 7565.7778 kcal/mol (7553.2220 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2201. Total energy = 7562.9737 kcal/mol (7550.4206 without restraints) Performing minimization step: 2202. Total energy = 7560.1705 kcal/mol (7547.6203 without restraints) Performing minimization step: 2203. Total energy = 7557.3683 kcal/mol (7544.8207 without restraints) Performing minimization step: 2204. Total energy = 7554.5669 kcal/mol (7542.0221 without restraints) Performing minimization step: 2205. Total energy = 7551.7672 kcal/mol (7539.2251 without restraints) Performing minimization step: 2206. Total energy = 7548.9686 kcal/mol (7536.4293 without restraints) Performing minimization step: 2207. Total energy = 7546.1712 kcal/mol (7533.6347 without restraints) Performing minimization step: 2208. Total energy = 7543.3752 kcal/mol (7530.8417 without restraints) Performing minimization step: 2209. Total energy = 7540.5804 kcal/mol (7528.0494 without restraints) Performing minimization step: 2210. Total energy = 7537.7864 kcal/mol (7525.2581 without restraints) Performing minimization step: 2211. Total energy = 7534.9934 kcal/mol (7522.4679 without restraints) Performing minimization step: 2212. Total energy = 7532.2019 kcal/mol (7519.6792 without restraints) Performing minimization step: 2213. Total energy = 7529.4115 kcal/mol (7516.8914 without restraints) Performing minimization step: 2214. Total energy = 7526.6220 kcal/mol (7514.1048 without restraints) Performing minimization step: 2215. Total energy = 7523.8342 kcal/mol (7511.3197 without restraints) Performing minimization step: 2216. Total energy = 7521.0471 kcal/mol (7508.5353 without restraints) Performing minimization step: 2217. Total energy = 7518.2611 kcal/mol (7505.7521 without restraints) Performing minimization step: 2218. Total energy = 7515.4763 kcal/mol (7502.9700 without restraints) Performing minimization step: 2219. Total energy = 7512.6930 kcal/mol (7500.1894 without restraints) Performing minimization step: 2220. Total energy = 7509.9102 kcal/mol (7497.4094 without restraints) Performing minimization step: 2221. Total energy = 7507.1286 kcal/mol (7494.6305 without restraints) Performing minimization step: 2222. Total energy = 7504.3482 kcal/mol (7491.8529 without restraints) Performing minimization step: 2223. Total energy = 7501.5690 kcal/mol (7489.0764 without restraints) Performing minimization step: 2224. Total energy = 7498.7908 kcal/mol (7486.3010 without restraints) Performing minimization step: 2225. Total energy = 7496.0144 kcal/mol (7483.5273 without restraints) Performing minimization step: 2226. Total energy = 7493.2389 kcal/mol (7480.7545 without restraints) Performing minimization step: 2227. Total energy = 7490.4641 kcal/mol (7477.9824 without restraints) Performing minimization step: 2228. Total energy = 7487.6904 kcal/mol (7475.2114 without restraints) Performing minimization step: 2229. Total energy = 7484.9178 kcal/mol (7472.4415 without restraints) Performing minimization step: 2230. Total energy = 7482.1463 kcal/mol (7469.6727 without restraints) Performing minimization step: 2231. Total energy = 7479.3757 kcal/mol (7466.9050 without restraints) Performing minimization step: 2232. Total energy = 7476.6069 kcal/mol (7464.1389 without restraints) Performing minimization step: 2233. Total energy = 7473.8388 kcal/mol (7461.3734 without restraints) Performing minimization step: 2234. Total energy = 7471.0718 kcal/mol (7458.6092 without restraints) Performing minimization step: 2235. Total energy = 7468.3058 kcal/mol (7455.8458 without restraints) Performing minimization step: 2236. Total energy = 7465.5410 kcal/mol (7453.0837 without restraints) Performing minimization step: 2237. Total energy = 7462.7774 kcal/mol (7450.3228 without restraints) Performing minimization step: 2238. Total energy = 7460.0145 kcal/mol (7447.5626 without restraints) Performing minimization step: 2239. Total energy = 7457.2528 kcal/mol (7444.8036 without restraints) Performing minimization step: 2240. Total energy = 7454.4925 kcal/mol (7442.0460 without restraints) Performing minimization step: 2241. Total energy = 7451.7330 kcal/mol (7439.2892 without restraints) Performing minimization step: 2242. Total energy = 7448.9744 kcal/mol (7436.5333 without restraints) Performing minimization step: 2243. Total energy = 7446.2171 kcal/mol (7433.7787 without restraints) Performing minimization step: 2244. Total energy = 7443.4608 kcal/mol (7431.0250 without restraints) Performing minimization step: 2245. Total energy = 7440.7061 kcal/mol (7428.2730 without restraints) Performing minimization step: 2246. Total energy = 7437.9524 kcal/mol (7425.5220 without restraints) Performing minimization step: 2247. Total energy = 7435.1994 kcal/mol (7422.7718 without restraints) Performing minimization step: 2248. Total energy = 7432.4475 kcal/mol (7420.0227 without restraints) Performing minimization step: 2249. Total energy = 7429.6966 kcal/mol (7417.2743 without restraints) Performing minimization step: 2250. Total energy = 7426.9464 kcal/mol (7414.5268 without restraints) Performing minimization step: 2251. Total energy = 7424.1975 kcal/mol (7411.7805 without restraints) Performing minimization step: 2252. Total energy = 7421.4495 kcal/mol (7409.0352 without restraints) Performing minimization step: 2253. Total energy = 7418.7023 kcal/mol (7406.2907 without restraints) Performing minimization step: 2254. Total energy = 7415.9565 kcal/mol (7403.5475 without restraints) Performing minimization step: 2255. Total energy = 7413.2117 kcal/mol (7400.8055 without restraints) Performing minimization step: 2256. Total energy = 7410.4683 kcal/mol (7398.0646 without restraints) Performing minimization step: 2257. Total energy = 7407.7256 kcal/mol (7395.3247 without restraints) Performing minimization step: 2258. Total energy = 7404.9838 kcal/mol (7392.5854 without restraints) Performing minimization step: 2259. Total energy = 7402.2432 kcal/mol (7389.8475 without restraints) Performing minimization step: 2260. Total energy = 7399.5037 kcal/mol (7387.1107 without restraints) Performing minimization step: 2261. Total energy = 7396.7649 kcal/mol (7384.3744 without restraints) Performing minimization step: 2262. Total energy = 7394.0272 kcal/mol (7381.6395 without restraints) Performing minimization step: 2263. Total energy = 7391.2906 kcal/mol (7378.9055 without restraints) Performing minimization step: 2264. Total energy = 7388.5551 kcal/mol (7376.1729 without restraints) Performing minimization step: 2265. Total energy = 7385.8206 kcal/mol (7373.4409 without restraints) Performing minimization step: 2266. Total energy = 7383.0879 kcal/mol (7370.7109 without restraints) Performing minimization step: 2267. Total energy = 7380.3554 kcal/mol (7367.9809 without restraints) Performing minimization step: 2268. Total energy = 7377.6232 kcal/mol (7365.2514 without restraints) Performing minimization step: 2269. Total energy = 7374.8927 kcal/mol (7362.5236 without restraints) Performing minimization step: 2270. Total energy = 7372.1634 kcal/mol (7359.7968 without restraints) Performing minimization step: 2271. Total energy = 7369.4349 kcal/mol (7357.0711 without restraints) Performing minimization step: 2272. Total energy = 7366.7073 kcal/mol (7354.3461 without restraints) Performing minimization step: 2273. Total energy = 7363.9812 kcal/mol (7351.6226 without restraints) Performing minimization step: 2274. Total energy = 7361.2561 kcal/mol (7348.9003 without restraints) Performing minimization step: 2275. Total energy = 7358.5319 kcal/mol (7346.1785 without restraints) Performing minimization step: 2276. Total energy = 7355.8083 kcal/mol (7343.4576 without restraints) Performing minimization step: 2277. Total energy = 7353.0862 kcal/mol (7340.7380 without restraints) Performing minimization step: 2278. Total energy = 7350.3651 kcal/mol (7338.0197 without restraints) Performing minimization step: 2279. Total energy = 7347.6442 kcal/mol (7335.3013 without restraints) Performing minimization step: 2280. Total energy = 7344.9249 kcal/mol (7332.5846 without restraints) Performing minimization step: 2281. Total energy = 7342.2065 kcal/mol (7329.8688 without restraints) Performing minimization step: 2282. Total energy = 7339.4889 kcal/mol (7327.1539 without restraints) Performing minimization step: 2283. Total energy = 7336.7721 kcal/mol (7324.4396 without restraints) Performing minimization step: 2284. Total energy = 7334.0564 kcal/mol (7321.7266 without restraints) Performing minimization step: 2285. Total energy = 7331.3417 kcal/mol (7319.0144 without restraints) Performing minimization step: 2286. Total energy = 7328.6281 kcal/mol (7316.3036 without restraints) Performing minimization step: 2287. Total energy = 7325.9154 kcal/mol (7313.5935 without restraints) Performing minimization step: 2288. Total energy = 7323.2034 kcal/mol (7310.8840 without restraints) Performing minimization step: 2289. Total energy = 7320.4927 kcal/mol (7308.1759 without restraints) Performing minimization step: 2290. Total energy = 7317.7830 kcal/mol (7305.4688 without restraints) Performing minimization step: 2291. Total energy = 7315.0743 kcal/mol (7302.7627 without restraints) Performing minimization step: 2292. Total energy = 7312.3668 kcal/mol (7300.0578 without restraints) Performing minimization step: 2293. Total energy = 7309.6598 kcal/mol (7297.3534 without restraints) Performing minimization step: 2294. Total energy = 7306.9542 kcal/mol (7294.6504 without restraints) Performing minimization step: 2295. Total energy = 7304.2492 kcal/mol (7291.9480 without restraints) Performing minimization step: 2296. Total energy = 7301.5451 kcal/mol (7289.2465 without restraints) Performing minimization step: 2297. Total energy = 7298.8420 kcal/mol (7286.5460 without restraints) Performing minimization step: 2298. Total energy = 7296.1402 kcal/mol (7283.8468 without restraints) Performing minimization step: 2299. Total energy = 7293.4386 kcal/mol (7281.1477 without restraints) Performing minimization step: 2300. Total energy = 7290.7382 kcal/mol (7278.4499 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2301. Total energy = 7288.0388 kcal/mol (7275.7531 without restraints) Performing minimization step: 2302. Total energy = 7285.3405 kcal/mol (7273.0574 without restraints) Performing minimization step: 2303. Total energy = 7282.6432 kcal/mol (7270.3626 without restraints) Performing minimization step: 2304. Total energy = 7279.9467 kcal/mol (7267.6688 without restraints) Performing minimization step: 2305. Total energy = 7277.2516 kcal/mol (7264.9761 without restraints) Performing minimization step: 2306. Total energy = 7274.5571 kcal/mol (7262.2842 without restraints) Performing minimization step: 2307. Total energy = 7271.8631 kcal/mol (7259.5928 without restraints) Performing minimization step: 2308. Total energy = 7269.1700 kcal/mol (7256.9023 without restraints) Performing minimization step: 2309. Total energy = 7266.4781 kcal/mol (7254.2130 without restraints) Performing minimization step: 2310. Total energy = 7263.7869 kcal/mol (7251.5243 without restraints) Performing minimization step: 2311. Total energy = 7261.0970 kcal/mol (7248.8371 without restraints) Performing minimization step: 2312. Total energy = 7258.4077 kcal/mol (7246.1502 without restraints) Performing minimization step: 2313. Total energy = 7255.7198 kcal/mol (7243.4649 without restraints) Performing minimization step: 2314. Total energy = 7253.0325 kcal/mol (7240.7801 without restraints) Performing minimization step: 2315. Total energy = 7250.3461 kcal/mol (7238.0962 without restraints) Performing minimization step: 2316. Total energy = 7247.6606 kcal/mol (7235.4133 without restraints) Performing minimization step: 2317. Total energy = 7244.9760 kcal/mol (7232.7313 without restraints) Performing minimization step: 2318. Total energy = 7242.2926 kcal/mol (7230.0504 without restraints) Performing minimization step: 2319. Total energy = 7239.6098 kcal/mol (7227.3702 without restraints) Performing minimization step: 2320. Total energy = 7236.9280 kcal/mol (7224.6909 without restraints) Performing minimization step: 2321. Total energy = 7234.2471 kcal/mol (7222.0125 without restraints) Performing minimization step: 2322. Total energy = 7231.5671 kcal/mol (7219.3351 without restraints) Performing minimization step: 2323. Total energy = 7228.8881 kcal/mol (7216.6587 without restraints) Performing minimization step: 2324. Total energy = 7226.2103 kcal/mol (7213.9834 without restraints) Performing minimization step: 2325. Total energy = 7223.5335 kcal/mol (7211.3092 without restraints) Performing minimization step: 2326. Total energy = 7220.8573 kcal/mol (7208.6354 without restraints) Performing minimization step: 2327. Total energy = 7218.1818 kcal/mol (7205.9625 without restraints) Performing minimization step: 2328. Total energy = 7215.5073 kcal/mol (7203.2905 without restraints) Performing minimization step: 2329. Total energy = 7212.8336 kcal/mol (7200.6193 without restraints) Performing minimization step: 2330. Total energy = 7210.1611 kcal/mol (7197.9494 without restraints) Performing minimization step: 2331. Total energy = 7207.4893 kcal/mol (7195.2800 without restraints) Performing minimization step: 2332. Total energy = 7204.8183 kcal/mol (7192.6115 without restraints) Performing minimization step: 2333. Total energy = 7202.1478 kcal/mol (7189.9436 without restraints) Performing minimization step: 2334. Total energy = 7199.4783 kcal/mol (7187.2766 without restraints) Performing minimization step: 2335. Total energy = 7196.8099 kcal/mol (7184.6107 without restraints) Performing minimization step: 2336. Total energy = 7194.1424 kcal/mol (7181.9457 without restraints) Performing minimization step: 2337. Total energy = 7191.4758 kcal/mol (7179.2816 without restraints) Performing minimization step: 2338. Total energy = 7188.8099 kcal/mol (7176.6183 without restraints) Performing minimization step: 2339. Total energy = 7186.1452 kcal/mol (7173.9561 without restraints) Performing minimization step: 2340. Total energy = 7183.4812 kcal/mol (7171.2946 without restraints) Performing minimization step: 2341. Total energy = 7180.8181 kcal/mol (7168.6340 without restraints) Performing minimization step: 2342. Total energy = 7178.1560 kcal/mol (7165.9743 without restraints) Performing minimization step: 2343. Total energy = 7175.4947 kcal/mol (7163.3157 without restraints) Performing minimization step: 2344. Total energy = 7172.8340 kcal/mol (7160.6575 without restraints) Performing minimization step: 2345. Total energy = 7170.1746 kcal/mol (7158.0005 without restraints) Performing minimization step: 2346. Total energy = 7167.5162 kcal/mol (7155.3445 without restraints) Performing minimization step: 2347. Total energy = 7164.8579 kcal/mol (7152.6887 without restraints) Performing minimization step: 2348. Total energy = 7162.2010 kcal/mol (7150.0343 without restraints) Performing minimization step: 2349. Total energy = 7159.5450 kcal/mol (7147.3809 without restraints) Performing minimization step: 2350. Total energy = 7156.8899 kcal/mol (7144.7284 without restraints) Performing minimization step: 2351. Total energy = 7154.2358 kcal/mol (7142.0766 without restraints) Performing minimization step: 2352. Total energy = 7151.5824 kcal/mol (7139.4257 without restraints) Performing minimization step: 2353. Total energy = 7148.9297 kcal/mol (7136.7754 without restraints) Performing minimization step: 2354. Total energy = 7146.2780 kcal/mol (7134.1264 without restraints) Performing minimization step: 2355. Total energy = 7143.6269 kcal/mol (7131.4776 without restraints) Performing minimization step: 2356. Total energy = 7140.9768 kcal/mol (7128.8300 without restraints) Performing minimization step: 2357. Total energy = 7138.3280 kcal/mol (7126.1838 without restraints) Performing minimization step: 2358. Total energy = 7135.6797 kcal/mol (7123.5378 without restraints) Performing minimization step: 2359. Total energy = 7133.0321 kcal/mol (7120.8928 without restraints) Performing minimization step: 2360. Total energy = 7130.3852 kcal/mol (7118.2483 without restraints) Performing minimization step: 2361. Total energy = 7127.7395 kcal/mol (7115.6051 without restraints) Performing minimization step: 2362. Total energy = 7125.0943 kcal/mol (7112.9623 without restraints) Performing minimization step: 2363. Total energy = 7122.4502 kcal/mol (7110.3208 without restraints) Performing minimization step: 2364. Total energy = 7119.8069 kcal/mol (7107.6801 without restraints) Performing minimization step: 2365. Total energy = 7117.1646 kcal/mol (7105.0400 without restraints) Performing minimization step: 2366. Total energy = 7114.5233 kcal/mol (7102.4012 without restraints) Performing minimization step: 2367. Total energy = 7111.8824 kcal/mol (7099.7627 without restraints) Performing minimization step: 2368. Total energy = 7109.2424 kcal/mol (7097.1251 without restraints) Performing minimization step: 2369. Total energy = 7106.6030 kcal/mol (7094.4883 without restraints) Performing minimization step: 2370. Total energy = 7103.9647 kcal/mol (7091.8523 without restraints) Performing minimization step: 2371. Total energy = 7101.3275 kcal/mol (7089.2177 without restraints) Performing minimization step: 2372. Total energy = 7098.6909 kcal/mol (7086.5834 without restraints) Performing minimization step: 2373. Total energy = 7096.0550 kcal/mol (7083.9501 without restraints) Performing minimization step: 2374. Total energy = 7093.4198 kcal/mol (7081.3173 without restraints) Performing minimization step: 2375. Total energy = 7090.7858 kcal/mol (7078.6858 without restraints) Performing minimization step: 2376. Total energy = 7088.1527 kcal/mol (7076.0551 without restraints) Performing minimization step: 2377. Total energy = 7085.5204 kcal/mol (7073.4252 without restraints) Performing minimization step: 2378. Total energy = 7082.8887 kcal/mol (7070.7960 without restraints) Performing minimization step: 2379. Total energy = 7080.2579 kcal/mol (7068.1676 without restraints) Performing minimization step: 2380. Total energy = 7077.6281 kcal/mol (7065.5401 without restraints) Performing minimization step: 2381. Total energy = 7074.9993 kcal/mol (7062.9139 without restraints) Performing minimization step: 2382. Total energy = 7072.3712 kcal/mol (7060.2881 without restraints) Performing minimization step: 2383. Total energy = 7069.7438 kcal/mol (7057.6632 without restraints) Performing minimization step: 2384. Total energy = 7067.1169 kcal/mol (7055.0387 without restraints) Performing minimization step: 2385. Total energy = 7064.4910 kcal/mol (7052.4152 without restraints) Performing minimization step: 2386. Total energy = 7061.8662 kcal/mol (7049.7932 without restraints) Performing minimization step: 2387. Total energy = 7059.2423 kcal/mol (7047.1713 without restraints) Performing minimization step: 2388. Total energy = 7056.6185 kcal/mol (7044.5499 without restraints) Performing minimization step: 2389. Total energy = 7053.9957 kcal/mol (7041.9297 without restraints) Performing minimization step: 2390. Total energy = 7051.3742 kcal/mol (7039.3105 without restraints) Performing minimization step: 2391. Total energy = 7048.7532 kcal/mol (7036.6920 without restraints) Performing minimization step: 2392. Total energy = 7046.1330 kcal/mol (7034.0742 without restraints) Performing minimization step: 2393. Total energy = 7043.5137 kcal/mol (7031.4573 without restraints) Performing minimization step: 2394. Total energy = 7040.8951 kcal/mol (7028.8411 without restraints) Performing minimization step: 2395. Total energy = 7038.2773 kcal/mol (7026.2257 without restraints) Performing minimization step: 2396. Total energy = 7035.6607 kcal/mol (7023.6115 without restraints) Performing minimization step: 2397. Total energy = 7033.0446 kcal/mol (7020.9978 without restraints) Performing minimization step: 2398. Total energy = 7030.4296 kcal/mol (7018.3852 without restraints) Performing minimization step: 2399. Total energy = 7027.8154 kcal/mol (7015.7734 without restraints) Performing minimization step: 2400. Total energy = 7025.2017 kcal/mol (7013.1621 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2401. Total energy = 7022.5888 kcal/mol (7010.5516 without restraints) Performing minimization step: 2402. Total energy = 7019.9768 kcal/mol (7007.9420 without restraints) Performing minimization step: 2403. Total energy = 7017.3656 kcal/mol (7005.3334 without restraints) Performing minimization step: 2404. Total energy = 7014.7552 kcal/mol (7002.7252 without restraints) Performing minimization step: 2405. Total energy = 7012.1456 kcal/mol (7000.1179 without restraints) Performing minimization step: 2406. Total energy = 7009.5365 kcal/mol (6997.5113 without restraints) Performing minimization step: 2407. Total energy = 7006.9290 kcal/mol (6994.9062 without restraints) Performing minimization step: 2408. Total energy = 7004.3217 kcal/mol (6992.3012 without restraints) Performing minimization step: 2409. Total energy = 7001.7150 kcal/mol (6989.6969 without restraints) Performing minimization step: 2410. Total energy = 6999.1093 kcal/mol (6987.0935 without restraints) Performing minimization step: 2411. Total energy = 6996.5043 kcal/mol (6984.4909 without restraints) Performing minimization step: 2412. Total energy = 6993.9001 kcal/mol (6981.8892 without restraints) Performing minimization step: 2413. Total energy = 6991.2968 kcal/mol (6979.2883 without restraints) Performing minimization step: 2414. Total energy = 6988.6943 kcal/mol (6976.6881 without restraints) Performing minimization step: 2415. Total energy = 6986.0930 kcal/mol (6974.0892 without restraints) Performing minimization step: 2416. Total energy = 6983.4921 kcal/mol (6971.4906 without restraints) Performing minimization step: 2417. Total energy = 6980.8920 kcal/mol (6968.8931 without restraints) Performing minimization step: 2418. Total energy = 6978.2927 kcal/mol (6966.2961 without restraints) Performing minimization step: 2419. Total energy = 6975.6943 kcal/mol (6963.7001 without restraints) Performing minimization step: 2420. Total energy = 6973.0966 kcal/mol (6961.1046 without restraints) Performing minimization step: 2421. Total energy = 6970.4998 kcal/mol (6958.5104 without restraints) Performing minimization step: 2422. Total energy = 6967.9036 kcal/mol (6955.9163 without restraints) Performing minimization step: 2423. Total energy = 6965.3081 kcal/mol (6953.3231 without restraints) Performing minimization step: 2424. Total energy = 6962.7138 kcal/mol (6950.7312 without restraints) Performing minimization step: 2425. Total energy = 6960.1202 kcal/mol (6948.1401 without restraints) Performing minimization step: 2426. Total energy = 6957.5272 kcal/mol (6945.5495 without restraints) Performing minimization step: 2427. Total energy = 6954.9352 kcal/mol (6942.9598 without restraints) Performing minimization step: 2428. Total energy = 6952.3438 kcal/mol (6940.3707 without restraints) Performing minimization step: 2429. Total energy = 6949.7534 kcal/mol (6937.7826 without restraints) Performing minimization step: 2430. Total energy = 6947.1639 kcal/mol (6935.1956 without restraints) Performing minimization step: 2431. Total energy = 6944.5752 kcal/mol (6932.6091 without restraints) Performing minimization step: 2432. Total energy = 6941.9870 kcal/mol (6930.0233 without restraints) Performing minimization step: 2433. Total energy = 6939.3993 kcal/mol (6927.4379 without restraints) Performing minimization step: 2434. Total energy = 6936.8125 kcal/mol (6924.8535 without restraints) Performing minimization step: 2435. Total energy = 6934.2261 kcal/mol (6922.2694 without restraints) Performing minimization step: 2436. Total energy = 6931.6409 kcal/mol (6919.6865 without restraints) Performing minimization step: 2437. Total energy = 6929.0564 kcal/mol (6917.1044 without restraints) Performing minimization step: 2438. Total energy = 6926.4727 kcal/mol (6914.5229 without restraints) Performing minimization step: 2439. Total energy = 6923.8899 kcal/mol (6911.9426 without restraints) Performing minimization step: 2440. Total energy = 6921.3083 kcal/mol (6909.3635 without restraints) Performing minimization step: 2441. Total energy = 6918.7275 kcal/mol (6906.7850 without restraints) Performing minimization step: 2442. Total energy = 6916.1476 kcal/mol (6904.2073 without restraints) Performing minimization step: 2443. Total energy = 6913.5677 kcal/mol (6901.6296 without restraints) Performing minimization step: 2444. Total energy = 6910.9887 kcal/mol (6899.0533 without restraints) Performing minimization step: 2445. Total energy = 6908.4104 kcal/mol (6896.4770 without restraints) Performing minimization step: 2446. Total energy = 6905.8328 kcal/mol (6893.9018 without restraints) Performing minimization step: 2447. Total energy = 6903.2556 kcal/mol (6891.3269 without restraints) Performing minimization step: 2448. Total energy = 6900.6796 kcal/mol (6888.7532 without restraints) Performing minimization step: 2449. Total energy = 6898.1046 kcal/mol (6886.1807 without restraints) Performing minimization step: 2450. Total energy = 6895.5304 kcal/mol (6883.6086 without restraints) Performing minimization step: 2451. Total energy = 6892.9572 kcal/mol (6881.0379 without restraints) Performing minimization step: 2452. Total energy = 6890.3845 kcal/mol (6878.4673 without restraints) Performing minimization step: 2453. Total energy = 6887.8126 kcal/mol (6875.8977 without restraints) Performing minimization step: 2454. Total energy = 6885.2413 kcal/mol (6873.3289 without restraints) Performing minimization step: 2455. Total energy = 6882.6710 kcal/mol (6870.7606 without restraints) Performing minimization step: 2456. Total energy = 6880.1012 kcal/mol (6868.1932 without restraints) Performing minimization step: 2457. Total energy = 6877.5321 kcal/mol (6865.6265 without restraints) Performing minimization step: 2458. Total energy = 6874.9637 kcal/mol (6863.0604 without restraints) Performing minimization step: 2459. Total energy = 6872.3965 kcal/mol (6860.4955 without restraints) Performing minimization step: 2460. Total energy = 6869.8297 kcal/mol (6857.9309 without restraints) Performing minimization step: 2461. Total energy = 6867.2643 kcal/mol (6855.3679 without restraints) Performing minimization step: 2462. Total energy = 6864.6999 kcal/mol (6852.8058 without restraints) Performing minimization step: 2463. Total energy = 6862.1355 kcal/mol (6850.2437 without restraints) Performing minimization step: 2464. Total energy = 6859.5723 kcal/mol (6847.6828 without restraints) Performing minimization step: 2465. Total energy = 6857.0095 kcal/mol (6845.1223 without restraints) Performing minimization step: 2466. Total energy = 6854.4474 kcal/mol (6842.5625 without restraints) Performing minimization step: 2467. Total energy = 6851.8861 kcal/mol (6840.0035 without restraints) Performing minimization step: 2468. Total energy = 6849.3255 kcal/mol (6837.4452 without restraints) Performing minimization step: 2469. Total energy = 6846.7659 kcal/mol (6834.8879 without restraints) Performing minimization step: 2470. Total energy = 6844.2067 kcal/mol (6832.3310 without restraints) Performing minimization step: 2471. Total energy = 6841.6484 kcal/mol (6829.7748 without restraints) Performing minimization step: 2472. Total energy = 6839.0910 kcal/mol (6827.2198 without restraints) Performing minimization step: 2473. Total energy = 6836.5343 kcal/mol (6824.6654 without restraints) Performing minimization step: 2474. Total energy = 6833.9781 kcal/mol (6822.1115 without restraints) Performing minimization step: 2475. Total energy = 6831.4229 kcal/mol (6819.5586 without restraints) Performing minimization step: 2476. Total energy = 6828.8685 kcal/mol (6817.0064 without restraints) Performing minimization step: 2477. Total energy = 6826.3152 kcal/mol (6814.4556 without restraints) Performing minimization step: 2478. Total energy = 6823.7629 kcal/mol (6811.9054 without restraints) Performing minimization step: 2479. Total energy = 6821.2107 kcal/mol (6809.3555 without restraints) Performing minimization step: 2480. Total energy = 6818.6594 kcal/mol (6806.8064 without restraints) Performing minimization step: 2481. Total energy = 6816.1088 kcal/mol (6804.2581 without restraints) Performing minimization step: 2482. Total energy = 6813.5594 kcal/mol (6801.7110 without restraints) Performing minimization step: 2483. Total energy = 6811.0105 kcal/mol (6799.1644 without restraints) Performing minimization step: 2484. Total energy = 6808.4624 kcal/mol (6796.6185 without restraints) Performing minimization step: 2485. Total energy = 6805.9149 kcal/mol (6794.0733 without restraints) Performing minimization step: 2486. Total energy = 6803.3680 kcal/mol (6791.5287 without restraints) Performing minimization step: 2487. Total energy = 6800.8222 kcal/mol (6788.9851 without restraints) Performing minimization step: 2488. Total energy = 6798.2770 kcal/mol (6786.4422 without restraints) Performing minimization step: 2489. Total energy = 6795.7324 kcal/mol (6783.8997 without restraints) Performing minimization step: 2490. Total energy = 6793.1885 kcal/mol (6781.3582 without restraints) Performing minimization step: 2491. Total energy = 6790.6454 kcal/mol (6778.8173 without restraints) Performing minimization step: 2492. Total energy = 6788.1031 kcal/mol (6776.2772 without restraints) Performing minimization step: 2493. Total energy = 6785.5616 kcal/mol (6773.7380 without restraints) Performing minimization step: 2494. Total energy = 6783.0208 kcal/mol (6771.1995 without restraints) Performing minimization step: 2495. Total energy = 6780.4809 kcal/mol (6768.6618 without restraints) Performing minimization step: 2496. Total energy = 6777.9417 kcal/mol (6766.1249 without restraints) Performing minimization step: 2497. Total energy = 6775.4034 kcal/mol (6763.5888 without restraints) Performing minimization step: 2498. Total energy = 6772.8654 kcal/mol (6761.0530 without restraints) Performing minimization step: 2499. Total energy = 6770.3286 kcal/mol (6758.5188 without restraints) Performing minimization step: 2500. Total energy = 6767.7928 kcal/mol (6755.9849 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2501. Total energy = 6765.2577 kcal/mol (6753.4521 without restraints) Performing minimization step: 2502. Total energy = 6762.7230 kcal/mol (6750.9196 without restraints) Performing minimization step: 2503. Total energy = 6760.1890 kcal/mol (6748.3879 without restraints) Performing minimization step: 2504. Total energy = 6757.6561 kcal/mol (6745.8572 without restraints) Performing minimization step: 2505. Total energy = 6755.1238 kcal/mol (6743.3272 without restraints) Performing minimization step: 2506. Total energy = 6752.5925 kcal/mol (6740.7980 without restraints) Performing minimization step: 2507. Total energy = 6750.0617 kcal/mol (6738.2695 without restraints) Performing minimization step: 2508. Total energy = 6747.5315 kcal/mol (6735.7414 without restraints) Performing minimization step: 2509. Total energy = 6745.0023 kcal/mol (6733.2145 without restraints) Performing minimization step: 2510. Total energy = 6742.4738 kcal/mol (6730.6882 without restraints) Performing minimization step: 2511. Total energy = 6739.9464 kcal/mol (6728.1631 without restraints) Performing minimization step: 2512. Total energy = 6737.4198 kcal/mol (6725.6387 without restraints) Performing minimization step: 2513. Total energy = 6734.8938 kcal/mol (6723.1149 without restraints) Performing minimization step: 2514. Total energy = 6732.3683 kcal/mol (6720.5917 without restraints) Performing minimization step: 2515. Total energy = 6729.8436 kcal/mol (6718.0692 without restraints) Performing minimization step: 2516. Total energy = 6727.3201 kcal/mol (6715.5479 without restraints) Performing minimization step: 2517. Total energy = 6724.7969 kcal/mol (6713.0270 without restraints) Performing minimization step: 2518. Total energy = 6722.2746 kcal/mol (6710.5069 without restraints) Performing minimization step: 2519. Total energy = 6719.7528 kcal/mol (6707.9873 without restraints) Performing minimization step: 2520. Total energy = 6717.2320 kcal/mol (6705.4687 without restraints) Performing minimization step: 2521. Total energy = 6714.7121 kcal/mol (6702.9512 without restraints) Performing minimization step: 2522. Total energy = 6712.1931 kcal/mol (6700.4343 without restraints) Performing minimization step: 2523. Total energy = 6709.6750 kcal/mol (6697.9183 without restraints) Performing minimization step: 2524. Total energy = 6707.1572 kcal/mol (6695.4027 without restraints) Performing minimization step: 2525. Total energy = 6704.6402 kcal/mol (6692.8879 without restraints) Performing minimization step: 2526. Total energy = 6702.1238 kcal/mol (6690.3736 without restraints) Performing minimization step: 2527. Total energy = 6699.6082 kcal/mol (6687.8603 without restraints) Performing minimization step: 2528. Total energy = 6697.0935 kcal/mol (6685.3478 without restraints) Performing minimization step: 2529. Total energy = 6694.5797 kcal/mol (6682.8363 without restraints) Performing minimization step: 2530. Total energy = 6692.0670 kcal/mol (6680.3257 without restraints) Performing minimization step: 2531. Total energy = 6689.5541 kcal/mol (6677.8151 without restraints) Performing minimization step: 2532. Total energy = 6687.0427 kcal/mol (6675.3058 without restraints) Performing minimization step: 2533. Total energy = 6684.5319 kcal/mol (6672.7973 without restraints) Performing minimization step: 2534. Total energy = 6682.0219 kcal/mol (6670.2894 without restraints) Performing minimization step: 2535. Total energy = 6679.5129 kcal/mol (6667.7826 without restraints) Performing minimization step: 2536. Total energy = 6677.0044 kcal/mol (6665.2762 without restraints) Performing minimization step: 2537. Total energy = 6674.4966 kcal/mol (6662.7707 without restraints) Performing minimization step: 2538. Total energy = 6671.9898 kcal/mol (6660.2661 without restraints) Performing minimization step: 2539. Total energy = 6669.4836 kcal/mol (6657.7621 without restraints) Performing minimization step: 2540. Total energy = 6666.9783 kcal/mol (6655.2589 without restraints) Performing minimization step: 2541. Total energy = 6664.4736 kcal/mol (6652.7564 without restraints) Performing minimization step: 2542. Total energy = 6661.9700 kcal/mol (6650.2550 without restraints) Performing minimization step: 2543. Total energy = 6659.4670 kcal/mol (6647.7541 without restraints) Performing minimization step: 2544. Total energy = 6656.9649 kcal/mol (6645.2542 without restraints) Performing minimization step: 2545. Total energy = 6654.4633 kcal/mol (6642.7548 without restraints) Performing minimization step: 2546. Total energy = 6651.9622 kcal/mol (6640.2559 without restraints) Performing minimization step: 2547. Total energy = 6649.4624 kcal/mol (6637.7583 without restraints) Performing minimization step: 2548. Total energy = 6646.9632 kcal/mol (6635.2613 without restraints) Performing minimization step: 2549. Total energy = 6644.4642 kcal/mol (6632.7643 without restraints) Performing minimization step: 2550. Total energy = 6641.9664 kcal/mol (6630.2688 without restraints) Performing minimization step: 2551. Total energy = 6639.4693 kcal/mol (6627.7739 without restraints) Performing minimization step: 2552. Total energy = 6636.9730 kcal/mol (6625.2798 without restraints) Performing minimization step: 2553. Total energy = 6634.4780 kcal/mol (6622.7870 without restraints) Performing minimization step: 2554. Total energy = 6631.9835 kcal/mol (6620.2946 without restraints) Performing minimization step: 2555. Total energy = 6629.4898 kcal/mol (6617.8031 without restraints) Performing minimization step: 2556. Total energy = 6626.9971 kcal/mol (6615.3125 without restraints) Performing minimization step: 2557. Total energy = 6624.5048 kcal/mol (6612.8222 without restraints) Performing minimization step: 2558. Total energy = 6622.0136 kcal/mol (6610.3334 without restraints) Performing minimization step: 2559. Total energy = 6619.5228 kcal/mol (6607.8447 without restraints) Performing minimization step: 2560. Total energy = 6617.0336 kcal/mol (6605.3578 without restraints) Performing minimization step: 2561. Total energy = 6614.5449 kcal/mol (6602.8711 without restraints) Performing minimization step: 2562. Total energy = 6612.0566 kcal/mol (6600.3850 without restraints) Performing minimization step: 2563. Total energy = 6609.5691 kcal/mol (6597.8997 without restraints) Performing minimization step: 2564. Total energy = 6607.0825 kcal/mol (6595.4151 without restraints) Performing minimization step: 2565. Total energy = 6604.5962 kcal/mol (6592.9311 without restraints) Performing minimization step: 2566. Total energy = 6602.1111 kcal/mol (6590.4481 without restraints) Performing minimization step: 2567. Total energy = 6599.6268 kcal/mol (6587.9659 without restraints) Performing minimization step: 2568. Total energy = 6597.1434 kcal/mol (6585.4848 without restraints) Performing minimization step: 2569. Total energy = 6594.6606 kcal/mol (6583.0041 without restraints) Performing minimization step: 2570. Total energy = 6592.1787 kcal/mol (6580.5243 without restraints) Performing minimization step: 2571. Total energy = 6589.6975 kcal/mol (6578.0451 without restraints) Performing minimization step: 2572. Total energy = 6587.2170 kcal/mol (6575.5669 without restraints) Performing minimization step: 2573. Total energy = 6584.7377 kcal/mol (6573.0898 without restraints) Performing minimization step: 2574. Total energy = 6582.2596 kcal/mol (6570.6138 without restraints) Performing minimization step: 2575. Total energy = 6579.7818 kcal/mol (6568.1381 without restraints) Performing minimization step: 2576. Total energy = 6577.3048 kcal/mol (6565.6632 without restraints) Performing minimization step: 2577. Total energy = 6574.8282 kcal/mol (6563.1888 without restraints) Performing minimization step: 2578. Total energy = 6572.3527 kcal/mol (6560.7155 without restraints) Performing minimization step: 2579. Total energy = 6569.8782 kcal/mol (6558.2429 without restraints) Performing minimization step: 2580. Total energy = 6567.4040 kcal/mol (6555.7710 without restraints) Performing minimization step: 2581. Total energy = 6564.9309 kcal/mol (6553.3000 without restraints) Performing minimization step: 2582. Total energy = 6562.4588 kcal/mol (6550.8301 without restraints) Performing minimization step: 2583. Total energy = 6559.9873 kcal/mol (6548.3607 without restraints) Performing minimization step: 2584. Total energy = 6557.5167 kcal/mol (6545.8922 without restraints) Performing minimization step: 2585. Total energy = 6555.0470 kcal/mol (6543.4249 without restraints) Performing minimization step: 2586. Total energy = 6552.5781 kcal/mol (6540.9578 without restraints) Performing minimization step: 2587. Total energy = 6550.1098 kcal/mol (6538.4917 without restraints) Performing minimization step: 2588. Total energy = 6547.6426 kcal/mol (6536.0267 without restraints) Performing minimization step: 2589. Total energy = 6545.1762 kcal/mol (6533.5624 without restraints) Performing minimization step: 2590. Total energy = 6542.7104 kcal/mol (6531.0987 without restraints) Performing minimization step: 2591. Total energy = 6540.2455 kcal/mol (6528.6359 without restraints) Performing minimization step: 2592. Total energy = 6537.7813 kcal/mol (6526.1738 without restraints) Performing minimization step: 2593. Total energy = 6535.3181 kcal/mol (6523.7127 without restraints) Performing minimization step: 2594. Total energy = 6532.8556 kcal/mol (6521.2523 without restraints) Performing minimization step: 2595. Total energy = 6530.3939 kcal/mol (6518.7928 without restraints) Performing minimization step: 2596. Total energy = 6527.9330 kcal/mol (6516.3341 without restraints) Performing minimization step: 2597. Total energy = 6525.4733 kcal/mol (6513.8764 without restraints) Performing minimization step: 2598. Total energy = 6523.0143 kcal/mol (6511.4195 without restraints) Performing minimization step: 2599. Total energy = 6520.5563 kcal/mol (6508.9637 without restraints) Performing minimization step: 2600. Total energy = 6518.0987 kcal/mol (6506.5082 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2601. Total energy = 6515.6419 kcal/mol (6504.0535 without restraints) Performing minimization step: 2602. Total energy = 6513.1861 kcal/mol (6501.5998 without restraints) Performing minimization step: 2603. Total energy = 6510.7312 kcal/mol (6499.1470 without restraints) Performing minimization step: 2604. Total energy = 6508.2770 kcal/mol (6496.6949 without restraints) Performing minimization step: 2605. Total energy = 6505.8235 kcal/mol (6494.2436 without restraints) Performing minimization step: 2606. Total energy = 6503.3709 kcal/mol (6491.7931 without restraints) Performing minimization step: 2607. Total energy = 6500.9193 kcal/mol (6489.3437 without restraints) Performing minimization step: 2608. Total energy = 6498.4686 kcal/mol (6486.8950 without restraints) Performing minimization step: 2609. Total energy = 6496.0186 kcal/mol (6484.4470 without restraints) Performing minimization step: 2610. Total energy = 6493.5696 kcal/mol (6482.0002 without restraints) Performing minimization step: 2611. Total energy = 6491.1212 kcal/mol (6479.5539 without restraints) Performing minimization step: 2612. Total energy = 6488.6741 kcal/mol (6477.1090 without restraints) Performing minimization step: 2613. Total energy = 6486.2275 kcal/mol (6474.6644 without restraints) Performing minimization step: 2614. Total energy = 6483.7817 kcal/mol (6472.2207 without restraints) Performing minimization step: 2615. Total energy = 6481.3368 kcal/mol (6469.7778 without restraints) Performing minimization step: 2616. Total energy = 6478.8928 kcal/mol (6467.3360 without restraints) Performing minimization step: 2617. Total energy = 6476.4496 kcal/mol (6464.8949 without restraints) Performing minimization step: 2618. Total energy = 6474.0072 kcal/mol (6462.4545 without restraints) Performing minimization step: 2619. Total energy = 6471.5658 kcal/mol (6460.0153 without restraints) Performing minimization step: 2620. Total energy = 6469.1253 kcal/mol (6457.5768 without restraints) Performing minimization step: 2621. Total energy = 6466.6853 kcal/mol (6455.1388 without restraints) Performing minimization step: 2622. Total energy = 6464.2462 kcal/mol (6452.7019 without restraints) Performing minimization step: 2623. Total energy = 6461.8078 kcal/mol (6450.2654 without restraints) Performing minimization step: 2624. Total energy = 6459.3705 kcal/mol (6447.8304 without restraints) Performing minimization step: 2625. Total energy = 6456.9343 kcal/mol (6445.3962 without restraints) Performing minimization step: 2626. Total energy = 6454.4989 kcal/mol (6442.9630 without restraints) Performing minimization step: 2627. Total energy = 6452.0642 kcal/mol (6440.5303 without restraints) Performing minimization step: 2628. Total energy = 6449.6307 kcal/mol (6438.0990 without restraints) Performing minimization step: 2629. Total energy = 6447.1982 kcal/mol (6435.6685 without restraints) Performing minimization step: 2630. Total energy = 6444.7663 kcal/mol (6433.2387 without restraints) Performing minimization step: 2631. Total energy = 6442.3351 kcal/mol (6430.8096 without restraints) Performing minimization step: 2632. Total energy = 6439.9047 kcal/mol (6428.3813 without restraints) Performing minimization step: 2633. Total energy = 6437.4754 kcal/mol (6425.9540 without restraints) Performing minimization step: 2634. Total energy = 6435.0468 kcal/mol (6423.5275 without restraints) Performing minimization step: 2635. Total energy = 6432.6189 kcal/mol (6421.1016 without restraints) Performing minimization step: 2636. Total energy = 6430.1922 kcal/mol (6418.6770 without restraints) Performing minimization step: 2637. Total energy = 6427.7662 kcal/mol (6416.2531 without restraints) Performing minimization step: 2638. Total energy = 6425.3411 kcal/mol (6413.8301 without restraints) Performing minimization step: 2639. Total energy = 6422.9173 kcal/mol (6411.4084 without restraints) Performing minimization step: 2640. Total energy = 6420.4943 kcal/mol (6408.9875 without restraints) Performing minimization step: 2641. Total energy = 6418.0722 kcal/mol (6406.5674 without restraints) Performing minimization step: 2642. Total energy = 6415.6504 kcal/mol (6404.1477 without restraints) Performing minimization step: 2643. Total energy = 6413.2298 kcal/mol (6401.7292 without restraints) Performing minimization step: 2644. Total energy = 6410.8102 kcal/mol (6399.3116 without restraints) Performing minimization step: 2645. Total energy = 6408.3915 kcal/mol (6396.8950 without restraints) Performing minimization step: 2646. Total energy = 6405.9735 kcal/mol (6394.4791 without restraints) Performing minimization step: 2647. Total energy = 6403.5564 kcal/mol (6392.0640 without restraints) Performing minimization step: 2648. Total energy = 6401.1401 kcal/mol (6389.6497 without restraints) Performing minimization step: 2649. Total energy = 6398.7247 kcal/mol (6387.2365 without restraints) Performing minimization step: 2650. Total energy = 6396.3105 kcal/mol (6384.8244 without restraints) Performing minimization step: 2651. Total energy = 6393.8975 kcal/mol (6382.4134 without restraints) Performing minimization step: 2652. Total energy = 6391.4850 kcal/mol (6380.0030 without restraints) Performing minimization step: 2653. Total energy = 6389.0732 kcal/mol (6377.5932 without restraints) Performing minimization step: 2654. Total energy = 6386.6628 kcal/mol (6375.1852 without restraints) Performing minimization step: 2655. Total energy = 6384.2533 kcal/mol (6372.7774 without restraints) Performing minimization step: 2656. Total energy = 6381.8449 kcal/mol (6370.3711 without restraints) Performing minimization step: 2657. Total energy = 6379.4369 kcal/mol (6367.9650 without restraints) Performing minimization step: 2658. Total energy = 6377.0301 kcal/mol (6365.5607 without restraints) Performing minimization step: 2659. Total energy = 6374.6245 kcal/mol (6363.1568 without restraints) Performing minimization step: 2660. Total energy = 6372.2197 kcal/mol (6360.7541 without restraints) Performing minimization step: 2661. Total energy = 6369.8157 kcal/mol (6358.3522 without restraints) Performing minimization step: 2662. Total energy = 6367.4124 kcal/mol (6355.9508 without restraints) Performing minimization step: 2663. Total energy = 6365.0099 kcal/mol (6353.5505 without restraints) Performing minimization step: 2664. Total energy = 6362.6084 kcal/mol (6351.1512 without restraints) Performing minimization step: 2665. Total energy = 6360.2083 kcal/mol (6348.7530 without restraints) Performing minimization step: 2666. Total energy = 6357.8085 kcal/mol (6346.3552 without restraints) Performing minimization step: 2667. Total energy = 6355.4102 kcal/mol (6343.9589 without restraints) Performing minimization step: 2668. Total energy = 6353.0124 kcal/mol (6341.5632 without restraints) Performing minimization step: 2669. Total energy = 6350.6154 kcal/mol (6339.1683 without restraints) Performing minimization step: 2670. Total energy = 6348.2195 kcal/mol (6336.7744 without restraints) Performing minimization step: 2671. Total energy = 6345.8246 kcal/mol (6334.3816 without restraints) Performing minimization step: 2672. Total energy = 6343.4309 kcal/mol (6331.9899 without restraints) Performing minimization step: 2673. Total energy = 6341.0379 kcal/mol (6329.5989 without restraints) Performing minimization step: 2674. Total energy = 6338.6461 kcal/mol (6327.2091 without restraints) Performing minimization step: 2675. Total energy = 6336.2552 kcal/mol (6324.8203 without restraints) Performing minimization step: 2676. Total energy = 6333.8652 kcal/mol (6322.4324 without restraints) Performing minimization step: 2677. Total energy = 6331.4762 kcal/mol (6320.0454 without restraints) Performing minimization step: 2678. Total energy = 6329.0880 kcal/mol (6317.6592 without restraints) Performing minimization step: 2679. Total energy = 6326.7007 kcal/mol (6315.2740 without restraints) Performing minimization step: 2680. Total energy = 6324.3146 kcal/mol (6312.8902 without restraints) Performing minimization step: 2681. Total energy = 6321.9293 kcal/mol (6310.5066 without restraints) Performing minimization step: 2682. Total energy = 6319.5454 kcal/mol (6308.1247 without restraints) Performing minimization step: 2683. Total energy = 6317.1618 kcal/mol (6305.7433 without restraints) Performing minimization step: 2684. Total energy = 6314.7797 kcal/mol (6303.3631 without restraints) Performing minimization step: 2685. Total energy = 6312.3981 kcal/mol (6300.9836 without restraints) Performing minimization step: 2686. Total energy = 6310.0178 kcal/mol (6298.6053 without restraints) Performing minimization step: 2687. Total energy = 6307.6383 kcal/mol (6296.2278 without restraints) Performing minimization step: 2688. Total energy = 6305.2597 kcal/mol (6293.8512 without restraints) Performing minimization step: 2689. Total energy = 6302.8825 kcal/mol (6291.4761 without restraints) Performing minimization step: 2690. Total energy = 6300.5060 kcal/mol (6289.1016 without restraints) Performing minimization step: 2691. Total energy = 6298.1306 kcal/mol (6286.7283 without restraints) Performing minimization step: 2692. Total energy = 6295.7560 kcal/mol (6284.3557 without restraints) Performing minimization step: 2693. Total energy = 6293.3830 kcal/mol (6281.9847 without restraints) Performing minimization step: 2694. Total energy = 6291.0104 kcal/mol (6279.6142 without restraints) Performing minimization step: 2695. Total energy = 6288.6389 kcal/mol (6277.2448 without restraints) Performing minimization step: 2696. Total energy = 6286.2690 kcal/mol (6274.8768 without restraints) Performing minimization step: 2697. Total energy = 6283.8994 kcal/mol (6272.5093 without restraints) Performing minimization step: 2698. Total energy = 6281.5309 kcal/mol (6270.1428 without restraints) Performing minimization step: 2699. Total energy = 6279.1634 kcal/mol (6267.7772 without restraints) Performing minimization step: 2700. Total energy = 6276.7967 kcal/mol (6265.4126 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2701. Total energy = 6274.4311 kcal/mol (6263.0490 without restraints) Performing minimization step: 2702. Total energy = 6272.0666 kcal/mol (6260.6865 without restraints) Performing minimization step: 2703. Total energy = 6269.7032 kcal/mol (6258.3251 without restraints) Performing minimization step: 2704. Total energy = 6267.3411 kcal/mol (6255.9650 without restraints) Performing minimization step: 2705. Total energy = 6264.9790 kcal/mol (6253.6049 without restraints) Performing minimization step: 2706. Total energy = 6262.6185 kcal/mol (6251.2465 without restraints) Performing minimization step: 2707. Total energy = 6260.2590 kcal/mol (6248.8890 without restraints) Performing minimization step: 2708. Total energy = 6257.9006 kcal/mol (6246.5327 without restraints) Performing minimization step: 2709. Total energy = 6255.5433 kcal/mol (6244.1774 without restraints) Performing minimization step: 2710. Total energy = 6253.1868 kcal/mol (6241.8228 without restraints) Performing minimization step: 2711. Total energy = 6250.8312 kcal/mol (6239.4693 without restraints) Performing minimization step: 2712. Total energy = 6248.4770 kcal/mol (6237.1171 without restraints) Performing minimization step: 2713. Total energy = 6246.1240 kcal/mol (6234.7661 without restraints) Performing minimization step: 2714. Total energy = 6243.7720 kcal/mol (6232.4162 without restraints) Performing minimization step: 2715. Total energy = 6241.4207 kcal/mol (6230.0669 without restraints) Performing minimization step: 2716. Total energy = 6239.0718 kcal/mol (6227.7201 without restraints) Performing minimization step: 2717. Total energy = 6236.7232 kcal/mol (6225.3733 without restraints) Performing minimization step: 2718. Total energy = 6234.3753 kcal/mol (6223.0275 without restraints) Performing minimization step: 2719. Total energy = 6232.0286 kcal/mol (6220.6829 without restraints) Performing minimization step: 2720. Total energy = 6229.6832 kcal/mol (6218.3394 without restraints) Performing minimization step: 2721. Total energy = 6227.3386 kcal/mol (6215.9969 without restraints) Performing minimization step: 2722. Total energy = 6224.9949 kcal/mol (6213.6551 without restraints) Performing minimization step: 2723. Total energy = 6222.6522 kcal/mol (6211.3144 without restraints) Performing minimization step: 2724. Total energy = 6220.3111 kcal/mol (6208.9753 without restraints) Performing minimization step: 2725. Total energy = 6217.9710 kcal/mol (6206.6373 without restraints) Performing minimization step: 2726. Total energy = 6215.6316 kcal/mol (6204.2998 without restraints) Performing minimization step: 2727. Total energy = 6213.2940 kcal/mol (6201.9642 without restraints) Performing minimization step: 2728. Total energy = 6210.9568 kcal/mol (6199.6291 without restraints) Performing minimization step: 2729. Total energy = 6208.6209 kcal/mol (6197.2952 without restraints) Performing minimization step: 2730. Total energy = 6206.2858 kcal/mol (6194.9619 without restraints) Performing minimization step: 2731. Total energy = 6203.9517 kcal/mol (6192.6300 without restraints) Performing minimization step: 2732. Total energy = 6201.6191 kcal/mol (6190.2995 without restraints) Performing minimization step: 2733. Total energy = 6199.2876 kcal/mol (6187.9698 without restraints) Performing minimization step: 2734. Total energy = 6196.9569 kcal/mol (6185.6410 without restraints) Performing minimization step: 2735. Total energy = 6194.6273 kcal/mol (6183.3136 without restraints) Performing minimization step: 2736. Total energy = 6192.2991 kcal/mol (6180.9874 without restraints) Performing minimization step: 2737. Total energy = 6189.9717 kcal/mol (6178.6619 without restraints) Performing minimization step: 2738. Total energy = 6187.6456 kcal/mol (6176.3378 without restraints) Performing minimization step: 2739. Total energy = 6185.3207 kcal/mol (6174.0150 without restraints) Performing minimization step: 2740. Total energy = 6182.9972 kcal/mol (6171.6935 without restraints) Performing minimization step: 2741. Total energy = 6180.6745 kcal/mol (6169.3727 without restraints) Performing minimization step: 2742. Total energy = 6178.3528 kcal/mol (6167.0530 without restraints) Performing minimization step: 2743. Total energy = 6176.0322 kcal/mol (6164.7344 without restraints) Performing minimization step: 2744. Total energy = 6173.7125 kcal/mol (6162.4167 without restraints) Performing minimization step: 2745. Total energy = 6171.3940 kcal/mol (6160.1002 without restraints) Performing minimization step: 2746. Total energy = 6169.0766 kcal/mol (6157.7848 without restraints) Performing minimization step: 2747. Total energy = 6166.7607 kcal/mol (6155.4710 without restraints) Performing minimization step: 2748. Total energy = 6164.4456 kcal/mol (6153.1578 without restraints) Performing minimization step: 2749. Total energy = 6162.1317 kcal/mol (6150.8459 without restraints) Performing minimization step: 2750. Total energy = 6159.8186 kcal/mol (6148.5348 without restraints) Performing minimization step: 2751. Total energy = 6157.5064 kcal/mol (6146.2244 without restraints) Performing minimization step: 2752. Total energy = 6155.1963 kcal/mol (6143.9165 without restraints) Performing minimization step: 2753. Total energy = 6152.8870 kcal/mol (6141.6091 without restraints) Performing minimization step: 2754. Total energy = 6150.5789 kcal/mol (6139.3031 without restraints) Performing minimization step: 2755. Total energy = 6148.2717 kcal/mol (6136.9979 without restraints) Performing minimization step: 2756. Total energy = 6145.9662 kcal/mol (6134.6943 without restraints) Performing minimization step: 2757. Total energy = 6143.6616 kcal/mol (6132.3917 without restraints) Performing minimization step: 2758. Total energy = 6141.3581 kcal/mol (6130.0902 without restraints) Performing minimization step: 2759. Total energy = 6139.0557 kcal/mol (6127.7898 without restraints) Performing minimization step: 2760. Total energy = 6136.7539 kcal/mol (6125.4900 without restraints) Performing minimization step: 2761. Total energy = 6134.4538 kcal/mol (6123.1918 without restraints) Performing minimization step: 2762. Total energy = 6132.1549 kcal/mol (6120.8951 without restraints) Performing minimization step: 2763. Total energy = 6129.8573 kcal/mol (6118.5993 without restraints) Performing minimization step: 2764. Total energy = 6127.5609 kcal/mol (6116.3049 without restraints) Performing minimization step: 2765. Total energy = 6125.2654 kcal/mol (6114.0114 without restraints) Performing minimization step: 2766. Total energy = 6122.9712 kcal/mol (6111.7193 without restraints) Performing minimization step: 2767. Total energy = 6120.6790 kcal/mol (6109.4289 without restraints) Performing minimization step: 2768. Total energy = 6118.3875 kcal/mol (6107.1395 without restraints) Performing minimization step: 2769. Total energy = 6116.0969 kcal/mol (6104.8509 without restraints) Performing minimization step: 2770. Total energy = 6113.8073 kcal/mol (6102.5632 without restraints) Performing minimization step: 2771. Total energy = 6111.5191 kcal/mol (6100.2769 without restraints) Performing minimization step: 2772. Total energy = 6109.2320 kcal/mol (6097.9918 without restraints) Performing minimization step: 2773. Total energy = 6106.9461 kcal/mol (6095.7080 without restraints) Performing minimization step: 2774. Total energy = 6104.6616 kcal/mol (6093.4256 without restraints) Performing minimization step: 2775. Total energy = 6102.3786 kcal/mol (6091.1445 without restraints) Performing minimization step: 2776. Total energy = 6100.0965 kcal/mol (6088.8643 without restraints) Performing minimization step: 2777. Total energy = 6097.8155 kcal/mol (6086.5853 without restraints) Performing minimization step: 2778. Total energy = 6095.5355 kcal/mol (6084.3072 without restraints) Performing minimization step: 2779. Total energy = 6093.2574 kcal/mol (6082.0311 without restraints) Performing minimization step: 2780. Total energy = 6090.9801 kcal/mol (6079.7558 without restraints) Performing minimization step: 2781. Total energy = 6088.7044 kcal/mol (6077.4821 without restraints) Performing minimization step: 2782. Total energy = 6086.4296 kcal/mol (6075.2093 without restraints) Performing minimization step: 2783. Total energy = 6084.1561 kcal/mol (6072.9379 without restraints) Performing minimization step: 2784. Total energy = 6081.8837 kcal/mol (6070.6673 without restraints) Performing minimization step: 2785. Total energy = 6079.6125 kcal/mol (6068.3982 without restraints) Performing minimization step: 2786. Total energy = 6077.3427 kcal/mol (6066.1302 without restraints) Performing minimization step: 2787. Total energy = 6075.0742 kcal/mol (6063.8638 without restraints) Performing minimization step: 2788. Total energy = 6072.8076 kcal/mol (6061.5992 without restraints) Performing minimization step: 2789. Total energy = 6070.5414 kcal/mol (6059.3349 without restraints) Performing minimization step: 2790. Total energy = 6068.2763 kcal/mol (6057.0718 without restraints) Performing minimization step: 2791. Total energy = 6066.0127 kcal/mol (6054.8099 without restraints) Performing minimization step: 2792. Total energy = 6063.7501 kcal/mol (6052.5496 without restraints) Performing minimization step: 2793. Total energy = 6061.4895 kcal/mol (6050.2911 without restraints) Performing minimization step: 2794. Total energy = 6059.2297 kcal/mol (6048.0330 without restraints) Performing minimization step: 2795. Total energy = 6056.9715 kcal/mol (6045.7768 without restraints) Performing minimization step: 2796. Total energy = 6054.7147 kcal/mol (6043.5220 without restraints) Performing minimization step: 2797. Total energy = 6052.4585 kcal/mol (6041.2678 without restraints) Performing minimization step: 2798. Total energy = 6050.2041 kcal/mol (6039.0154 without restraints) Performing minimization step: 2799. Total energy = 6047.9503 kcal/mol (6036.7635 without restraints) Performing minimization step: 2800. Total energy = 6045.6982 kcal/mol (6034.5134 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2801. Total energy = 6043.4475 kcal/mol (6032.2648 without restraints) Performing minimization step: 2802. Total energy = 6041.1982 kcal/mol (6030.0175 without restraints) Performing minimization step: 2803. Total energy = 6038.9503 kcal/mol (6027.7715 without restraints) Performing minimization step: 2804. Total energy = 6036.7034 kcal/mol (6025.5266 without restraints) Performing minimization step: 2805. Total energy = 6034.4581 kcal/mol (6023.2833 without restraints) Performing minimization step: 2806. Total energy = 6032.2140 kcal/mol (6021.0410 without restraints) Performing minimization step: 2807. Total energy = 6029.9710 kcal/mol (6018.8000 without restraints) Performing minimization step: 2808. Total energy = 6027.7298 kcal/mol (6016.5608 without restraints) Performing minimization step: 2809. Total energy = 6025.4897 kcal/mol (6014.3226 without restraints) Performing minimization step: 2810. Total energy = 6023.2506 kcal/mol (6012.0856 without restraints) Performing minimization step: 2811. Total energy = 6021.0129 kcal/mol (6009.8498 without restraints) Performing minimization step: 2812. Total energy = 6018.7766 kcal/mol (6007.6154 without restraints) Performing minimization step: 2813. Total energy = 6016.5415 kcal/mol (6005.3823 without restraints) Performing minimization step: 2814. Total energy = 6014.3078 kcal/mol (6003.1506 without restraints) Performing minimization step: 2815. Total energy = 6012.0754 kcal/mol (6000.9202 without restraints) Performing minimization step: 2816. Total energy = 6009.8446 kcal/mol (5998.6913 without restraints) Performing minimization step: 2817. Total energy = 6007.6147 kcal/mol (5996.4634 without restraints) Performing minimization step: 2818. Total energy = 6005.3864 kcal/mol (5994.2370 without restraints) Performing minimization step: 2819. Total energy = 6003.1596 kcal/mol (5992.0122 without restraints) Performing minimization step: 2820. Total energy = 6000.9339 kcal/mol (5989.7885 without restraints) Performing minimization step: 2821. Total energy = 5998.7097 kcal/mol (5987.5662 without restraints) Performing minimization step: 2822. Total energy = 5996.4869 kcal/mol (5985.3455 without restraints) Performing minimization step: 2823. Total energy = 5994.2649 kcal/mol (5983.1254 without restraints) Performing minimization step: 2824. Total energy = 5992.0447 kcal/mol (5980.9072 without restraints) Performing minimization step: 2825. Total energy = 5989.8263 kcal/mol (5978.6907 without restraints) Performing minimization step: 2826. Total energy = 5987.6090 kcal/mol (5976.4754 without restraints) Performing minimization step: 2827. Total energy = 5985.3933 kcal/mol (5974.2616 without restraints) Performing minimization step: 2828. Total energy = 5983.1784 kcal/mol (5972.0487 without restraints) Performing minimization step: 2829. Total energy = 5980.9648 kcal/mol (5969.8371 without restraints) Performing minimization step: 2830. Total energy = 5978.7530 kcal/mol (5967.6273 without restraints) Performing minimization step: 2831. Total energy = 5976.5426 kcal/mol (5965.4187 without restraints) Performing minimization step: 2832. Total energy = 5974.3333 kcal/mol (5963.2114 without restraints) Performing minimization step: 2833. Total energy = 5972.1253 kcal/mol (5961.0055 without restraints) Performing minimization step: 2834. Total energy = 5969.9189 kcal/mol (5958.8010 without restraints) Performing minimization step: 2835. Total energy = 5967.7140 kcal/mol (5956.5980 without restraints) Performing minimization step: 2836. Total energy = 5965.5107 kcal/mol (5954.3967 without restraints) Performing minimization step: 2837. Total energy = 5963.3085 kcal/mol (5952.1965 without restraints) Performing minimization step: 2838. Total energy = 5961.1078 kcal/mol (5949.9977 without restraints) Performing minimization step: 2839. Total energy = 5958.9087 kcal/mol (5947.8007 without restraints) Performing minimization step: 2840. Total energy = 5956.7113 kcal/mol (5945.6052 without restraints) Performing minimization step: 2841. Total energy = 5954.5153 kcal/mol (5943.4111 without restraints) Performing minimization step: 2842. Total energy = 5952.3199 kcal/mol (5941.2177 without restraints) Performing minimization step: 2843. Total energy = 5950.1263 kcal/mol (5939.0261 without restraints) Performing minimization step: 2844. Total energy = 5947.9338 kcal/mol (5936.8357 without restraints) Performing minimization step: 2845. Total energy = 5945.7431 kcal/mol (5934.6469 without restraints) Performing minimization step: 2846. Total energy = 5943.5540 kcal/mol (5932.4596 without restraints) Performing minimization step: 2847. Total energy = 5941.3667 kcal/mol (5930.2743 without restraints) Performing minimization step: 2848. Total energy = 5939.1803 kcal/mol (5928.0897 without restraints) Performing minimization step: 2849. Total energy = 5936.9958 kcal/mol (5925.9073 without restraints) Performing minimization step: 2850. Total energy = 5934.8122 kcal/mol (5923.7257 without restraints) Performing minimization step: 2851. Total energy = 5932.6301 kcal/mol (5921.5455 without restraints) Performing minimization step: 2852. Total energy = 5930.4494 kcal/mol (5919.3668 without restraints) Performing minimization step: 2853. Total energy = 5928.2708 kcal/mol (5917.1902 without restraints) Performing minimization step: 2854. Total energy = 5926.0933 kcal/mol (5915.0149 without restraints) Performing minimization step: 2855. Total energy = 5923.9171 kcal/mol (5912.8403 without restraints) Performing minimization step: 2856. Total energy = 5921.7423 kcal/mol (5910.6675 without restraints) Performing minimization step: 2857. Total energy = 5919.5692 kcal/mol (5908.4964 without restraints) Performing minimization step: 2858. Total energy = 5917.3977 kcal/mol (5906.3269 without restraints) Performing minimization step: 2859. Total energy = 5915.2276 kcal/mol (5904.1587 without restraints) Performing minimization step: 2860. Total energy = 5913.0584 kcal/mol (5901.9915 without restraints) Performing minimization step: 2861. Total energy = 5910.8912 kcal/mol (5899.8262 without restraints) Performing minimization step: 2862. Total energy = 5908.7252 kcal/mol (5897.6622 without restraints) Performing minimization step: 2863. Total energy = 5906.5610 kcal/mol (5895.5001 without restraints) Performing minimization step: 2864. Total energy = 5904.3981 kcal/mol (5893.3390 without restraints) Performing minimization step: 2865. Total energy = 5902.2369 kcal/mol (5891.1798 without restraints) Performing minimization step: 2866. Total energy = 5900.0770 kcal/mol (5889.0218 without restraints) Performing minimization step: 2867. Total energy = 5897.9185 kcal/mol (5886.8653 without restraints) Performing minimization step: 2868. Total energy = 5895.7620 kcal/mol (5884.7107 without restraints) Performing minimization step: 2869. Total energy = 5893.6067 kcal/mol (5882.5575 without restraints) Performing minimization step: 2870. Total energy = 5891.4529 kcal/mol (5880.4056 without restraints) Performing minimization step: 2871. Total energy = 5889.3006 kcal/mol (5878.2552 without restraints) Performing minimization step: 2872. Total energy = 5887.1495 kcal/mol (5876.1061 without restraints) Performing minimization step: 2873. Total energy = 5885.0004 kcal/mol (5873.9589 without restraints) Performing minimization step: 2874. Total energy = 5882.8523 kcal/mol (5871.8129 without restraints) Performing minimization step: 2875. Total energy = 5880.7062 kcal/mol (5869.6686 without restraints) Performing minimization step: 2876. Total energy = 5878.5619 kcal/mol (5867.5265 without restraints) Performing minimization step: 2877. Total energy = 5876.4192 kcal/mol (5865.3856 without restraints) Performing minimization step: 2878. Total energy = 5874.2775 kcal/mol (5863.2458 without restraints) Performing minimization step: 2879. Total energy = 5872.1376 kcal/mol (5861.1079 without restraints) Performing minimization step: 2880. Total energy = 5869.9991 kcal/mol (5858.9713 without restraints) Performing minimization step: 2881. Total energy = 5867.8620 kcal/mol (5856.8362 without restraints) Performing minimization step: 2882. Total energy = 5865.7265 kcal/mol (5854.7027 without restraints) Performing minimization step: 2883. Total energy = 5863.5926 kcal/mol (5852.5707 without restraints) Performing minimization step: 2884. Total energy = 5861.4602 kcal/mol (5850.4403 without restraints) Performing minimization step: 2885. Total energy = 5859.3294 kcal/mol (5848.3115 without restraints) Performing minimization step: 2886. Total energy = 5857.2003 kcal/mol (5846.1843 without restraints) Performing minimization step: 2887. Total energy = 5855.0726 kcal/mol (5844.0585 without restraints) Performing minimization step: 2888. Total energy = 5852.9469 kcal/mol (5841.9348 without restraints) Performing minimization step: 2889. Total energy = 5850.8228 kcal/mol (5839.8127 without restraints) Performing minimization step: 2890. Total energy = 5848.7000 kcal/mol (5837.6918 without restraints) Performing minimization step: 2891. Total energy = 5846.5787 kcal/mol (5835.5724 without restraints) Performing minimization step: 2892. Total energy = 5844.4588 kcal/mol (5833.4545 without restraints) Performing minimization step: 2893. Total energy = 5842.3405 kcal/mol (5831.3382 without restraints) Performing minimization step: 2894. Total energy = 5840.2240 kcal/mol (5829.2237 without restraints) Performing minimization step: 2895. Total energy = 5838.1090 kcal/mol (5827.1106 without restraints) Performing minimization step: 2896. Total energy = 5835.9957 kcal/mol (5824.9993 without restraints) Performing minimization step: 2897. Total energy = 5833.8845 kcal/mol (5822.8900 without restraints) Performing minimization step: 2898. Total energy = 5831.7744 kcal/mol (5820.7819 without restraints) Performing minimization step: 2899. Total energy = 5829.6657 kcal/mol (5818.6752 without restraints) Performing minimization step: 2900. Total energy = 5827.5586 kcal/mol (5816.5700 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 2901. Total energy = 5825.4534 kcal/mol (5814.4668 without restraints) Performing minimization step: 2902. Total energy = 5823.3495 kcal/mol (5812.3648 without restraints) Performing minimization step: 2903. Total energy = 5821.2475 kcal/mol (5810.2648 without restraints) Performing minimization step: 2904. Total energy = 5819.1469 kcal/mol (5808.1661 without restraints) Performing minimization step: 2905. Total energy = 5817.0480 kcal/mol (5806.0692 without restraints) Performing minimization step: 2906. Total energy = 5814.9511 kcal/mol (5803.9742 without restraints) Performing minimization step: 2907. Total energy = 5812.8552 kcal/mol (5801.8802 without restraints) Performing minimization step: 2908. Total energy = 5810.7610 kcal/mol (5799.7882 without restraints) Performing minimization step: 2909. Total energy = 5808.6687 kcal/mol (5797.6977 without restraints) Performing minimization step: 2910. Total energy = 5806.5787 kcal/mol (5795.6097 without restraints) Performing minimization step: 2911. Total energy = 5804.4895 kcal/mol (5793.5224 without restraints) Performing minimization step: 2912. Total energy = 5802.4019 kcal/mol (5791.4368 without restraints) Performing minimization step: 2913. Total energy = 5800.3163 kcal/mol (5789.3531 without restraints) Performing minimization step: 2914. Total energy = 5798.2320 kcal/mol (5787.2709 without restraints) Performing minimization step: 2915. Total energy = 5796.1492 kcal/mol (5785.1900 without restraints) Performing minimization step: 2916. Total energy = 5794.0687 kcal/mol (5783.1116 without restraints) Performing minimization step: 2917. Total energy = 5791.9900 kcal/mol (5781.0347 without restraints) Performing minimization step: 2918. Total energy = 5789.9124 kcal/mol (5778.9590 without restraints) Performing minimization step: 2919. Total energy = 5787.8366 kcal/mol (5776.8852 without restraints) Performing minimization step: 2920. Total energy = 5785.7628 kcal/mol (5774.8138 without restraints) Performing minimization step: 2921. Total energy = 5783.6906 kcal/mol (5772.7432 without restraints) Performing minimization step: 2922. Total energy = 5781.6199 kcal/mol (5770.6744 without restraints) Performing minimization step: 2923. Total energy = 5779.5506 kcal/mol (5768.6071 without restraints) Performing minimization step: 2924. Total energy = 5777.4829 kcal/mol (5766.5414 without restraints) Performing minimization step: 2925. Total energy = 5775.4171 kcal/mol (5764.4774 without restraints) Performing minimization step: 2926. Total energy = 5773.3529 kcal/mol (5762.4152 without restraints) Performing minimization step: 2927. Total energy = 5771.2905 kcal/mol (5760.3547 without restraints) Performing minimization step: 2928. Total energy = 5769.2300 kcal/mol (5758.2962 without restraints) Performing minimization step: 2929. Total energy = 5767.1706 kcal/mol (5756.2388 without restraints) Performing minimization step: 2930. Total energy = 5765.1131 kcal/mol (5754.1832 without restraints) Performing minimization step: 2931. Total energy = 5763.0574 kcal/mol (5752.1296 without restraints) Performing minimization step: 2932. Total energy = 5761.0033 kcal/mol (5750.0771 without restraints) Performing minimization step: 2933. Total energy = 5758.9504 kcal/mol (5748.0263 without restraints) Performing minimization step: 2934. Total energy = 5756.8994 kcal/mol (5745.9773 without restraints) Performing minimization step: 2935. Total energy = 5754.8505 kcal/mol (5743.9305 without restraints) Performing minimization step: 2936. Total energy = 5752.8035 kcal/mol (5741.8854 without restraints) Performing minimization step: 2937. Total energy = 5750.7579 kcal/mol (5739.8417 without restraints) Performing minimization step: 2938. Total energy = 5748.7140 kcal/mol (5737.7999 without restraints) Performing minimization step: 2939. Total energy = 5746.6721 kcal/mol (5735.7599 without restraints) Performing minimization step: 2940. Total energy = 5744.6318 kcal/mol (5733.7215 without restraints) Performing minimization step: 2941. Total energy = 5742.5931 kcal/mol (5731.6848 without restraints) Performing minimization step: 2942. Total energy = 5740.5564 kcal/mol (5729.6501 without restraints) Performing minimization step: 2943. Total energy = 5738.5212 kcal/mol (5727.6169 without restraints) Performing minimization step: 2944. Total energy = 5736.4877 kcal/mol (5725.5852 without restraints) Performing minimization step: 2945. Total energy = 5734.4558 kcal/mol (5723.5553 without restraints) Performing minimization step: 2946. Total energy = 5732.4257 kcal/mol (5721.5272 without restraints) Performing minimization step: 2947. Total energy = 5730.3977 kcal/mol (5719.5011 without restraints) Performing minimization step: 2948. Total energy = 5728.3715 kcal/mol (5717.4769 without restraints) Performing minimization step: 2949. Total energy = 5726.3472 kcal/mol (5715.4546 without restraints) Performing minimization step: 2950. Total energy = 5724.3240 kcal/mol (5713.4333 without restraints) Performing minimization step: 2951. Total energy = 5722.3026 kcal/mol (5711.4138 without restraints) Performing minimization step: 2952. Total energy = 5720.2827 kcal/mol (5709.3959 without restraints) Performing minimization step: 2953. Total energy = 5718.2649 kcal/mol (5707.3802 without restraints) Performing minimization step: 2954. Total energy = 5716.2490 kcal/mol (5705.3661 without restraints) Performing minimization step: 2955. Total energy = 5714.2350 kcal/mol (5703.3541 without restraints) Performing minimization step: 2956. Total energy = 5712.2221 kcal/mol (5701.3432 without restraints) Performing minimization step: 2957. Total energy = 5710.2113 kcal/mol (5699.3343 without restraints) Performing minimization step: 2958. Total energy = 5708.2023 kcal/mol (5697.3273 without restraints) Performing minimization step: 2959. Total energy = 5706.1950 kcal/mol (5695.3220 without restraints) Performing minimization step: 2960. Total energy = 5704.1894 kcal/mol (5693.3183 without restraints) Performing minimization step: 2961. Total energy = 5702.1854 kcal/mol (5691.3162 without restraints) Performing minimization step: 2962. Total energy = 5700.1834 kcal/mol (5689.3164 without restraints) Performing minimization step: 2963. Total energy = 5698.1832 kcal/mol (5687.3180 without restraints) Performing minimization step: 2964. Total energy = 5696.1848 kcal/mol (5685.3215 without restraints) Performing minimization step: 2965. Total energy = 5694.1882 kcal/mol (5683.3270 without restraints) Performing minimization step: 2966. Total energy = 5692.1934 kcal/mol (5681.3340 without restraints) Performing minimization step: 2967. Total energy = 5690.2004 kcal/mol (5679.3433 without restraints) Performing minimization step: 2968. Total energy = 5688.2092 kcal/mol (5677.3538 without restraints) Performing minimization step: 2969. Total energy = 5686.2198 kcal/mol (5675.3664 without restraints) Performing minimization step: 2970. Total energy = 5684.2320 kcal/mol (5673.3805 without restraints) Performing minimization step: 2971. Total energy = 5682.2463 kcal/mol (5671.3968 without restraints) Performing minimization step: 2972. Total energy = 5680.2621 kcal/mol (5669.4146 without restraints) Performing minimization step: 2973. Total energy = 5678.2796 kcal/mol (5667.4340 without restraints) Performing minimization step: 2974. Total energy = 5676.2989 kcal/mol (5665.4553 without restraints) Performing minimization step: 2975. Total energy = 5674.3201 kcal/mol (5663.4784 without restraints) Performing minimization step: 2976. Total energy = 5672.3435 kcal/mol (5661.5038 without restraints) Performing minimization step: 2977. Total energy = 5670.3683 kcal/mol (5659.5306 without restraints) Performing minimization step: 2978. Total energy = 5668.3948 kcal/mol (5657.5590 without restraints) Performing minimization step: 2979. Total energy = 5666.4231 kcal/mol (5655.5893 without restraints) Performing minimization step: 2980. Total energy = 5664.4538 kcal/mol (5653.6221 without restraints) Performing minimization step: 2981. Total energy = 5662.4860 kcal/mol (5651.6563 without restraints) Performing minimization step: 2982. Total energy = 5660.5200 kcal/mol (5649.6920 without restraints) Performing minimization step: 2983. Total energy = 5658.5557 kcal/mol (5647.7298 without restraints) Performing minimization step: 2984. Total energy = 5656.5931 kcal/mol (5645.7690 without restraints) Performing minimization step: 2985. Total energy = 5654.6322 kcal/mol (5643.8102 without restraints) Performing minimization step: 2986. Total energy = 5652.6733 kcal/mol (5641.8533 without restraints) Performing minimization step: 2987. Total energy = 5650.7160 kcal/mol (5639.8979 without restraints) Performing minimization step: 2988. Total energy = 5648.7608 kcal/mol (5637.9447 without restraints) Performing minimization step: 2989. Total energy = 5646.8076 kcal/mol (5635.9935 without restraints) Performing minimization step: 2990. Total energy = 5644.8560 kcal/mol (5634.0438 without restraints) Performing minimization step: 2991. Total energy = 5642.9062 kcal/mol (5632.0960 without restraints) Performing minimization step: 2992. Total energy = 5640.9587 kcal/mol (5630.1504 without restraints) Performing minimization step: 2993. Total energy = 5639.0125 kcal/mol (5628.2062 without restraints) Performing minimization step: 2994. Total energy = 5637.0680 kcal/mol (5626.2638 without restraints) Performing minimization step: 2995. Total energy = 5635.1256 kcal/mol (5624.3232 without restraints) Performing minimization step: 2996. Total energy = 5633.1851 kcal/mol (5622.3847 without restraints) Performing minimization step: 2997. Total energy = 5631.2465 kcal/mol (5620.4480 without restraints) Performing minimization step: 2998. Total energy = 5629.3095 kcal/mol (5618.5130 without restraints) Performing minimization step: 2999. Total energy = 5627.3745 kcal/mol (5616.5800 without restraints) Performing minimization step: 3000. Total energy = 5625.4415 kcal/mol (5614.6490 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3001. Total energy = 5623.5108 kcal/mol (5612.7204 without restraints) Performing minimization step: 3002. Total energy = 5621.5815 kcal/mol (5610.7929 without restraints) Performing minimization step: 3003. Total energy = 5619.6533 kcal/mol (5608.8666 without restraints) Performing minimization step: 3004. Total energy = 5617.7275 kcal/mol (5606.9428 without restraints) Performing minimization step: 3005. Total energy = 5615.8035 kcal/mol (5605.0208 without restraints) Performing minimization step: 3006. Total energy = 5613.8813 kcal/mol (5603.1005 without restraints) Performing minimization step: 3007. Total energy = 5611.9609 kcal/mol (5601.1821 without restraints) Performing minimization step: 3008. Total energy = 5610.0426 kcal/mol (5599.2657 without restraints) Performing minimization step: 3009. Total energy = 5608.1263 kcal/mol (5597.3515 without restraints) Performing minimization step: 3010. Total energy = 5606.2116 kcal/mol (5595.4387 without restraints) Performing minimization step: 3011. Total energy = 5604.2990 kcal/mol (5593.5281 without restraints) Performing minimization step: 3012. Total energy = 5602.3886 kcal/mol (5591.6197 without restraints) Performing minimization step: 3013. Total energy = 5600.4795 kcal/mol (5589.7125 without restraints) Performing minimization step: 3014. Total energy = 5598.5722 kcal/mol (5587.8071 without restraints) Performing minimization step: 3015. Total energy = 5596.6665 kcal/mol (5585.9034 without restraints) Performing minimization step: 3016. Total energy = 5594.7627 kcal/mol (5584.0016 without restraints) Performing minimization step: 3017. Total energy = 5592.8612 kcal/mol (5582.1021 without restraints) Performing minimization step: 3018. Total energy = 5590.9614 kcal/mol (5580.2043 without restraints) Performing minimization step: 3019. Total energy = 5589.0636 kcal/mol (5578.3083 without restraints) Performing minimization step: 3020. Total energy = 5587.1675 kcal/mol (5576.4143 without restraints) Performing minimization step: 3021. Total energy = 5585.2737 kcal/mol (5574.5224 without restraints) Performing minimization step: 3022. Total energy = 5583.3811 kcal/mol (5572.6318 without restraints) Performing minimization step: 3023. Total energy = 5581.4908 kcal/mol (5570.7435 without restraints) Performing minimization step: 3024. Total energy = 5579.6023 kcal/mol (5568.8569 without restraints) Performing minimization step: 3025. Total energy = 5577.7157 kcal/mol (5566.9723 without restraints) Performing minimization step: 3026. Total energy = 5575.8313 kcal/mol (5565.0898 without restraints) Performing minimization step: 3027. Total energy = 5573.9487 kcal/mol (5563.2094 without restraints) Performing minimization step: 3028. Total energy = 5572.0677 kcal/mol (5561.3304 without restraints) Performing minimization step: 3029. Total energy = 5570.1890 kcal/mol (5559.4534 without restraints) Performing minimization step: 3030. Total energy = 5568.3122 kcal/mol (5557.5786 without restraints) Performing minimization step: 3031. Total energy = 5566.4369 kcal/mol (5555.7053 without restraints) Performing minimization step: 3032. Total energy = 5564.5634 kcal/mol (5553.8338 without restraints) Performing minimization step: 3033. Total energy = 5562.6915 kcal/mol (5551.9638 without restraints) Performing minimization step: 3034. Total energy = 5560.8218 kcal/mol (5550.0963 without restraints) Performing minimization step: 3035. Total energy = 5558.9541 kcal/mol (5548.2304 without restraints) Performing minimization step: 3036. Total energy = 5557.0886 kcal/mol (5546.3668 without restraints) Performing minimization step: 3037. Total energy = 5555.2244 kcal/mol (5544.5047 without restraints) Performing minimization step: 3038. Total energy = 5553.3629 kcal/mol (5542.6451 without restraints) Performing minimization step: 3039. Total energy = 5551.5026 kcal/mol (5540.7867 without restraints) Performing minimization step: 3040. Total energy = 5549.6443 kcal/mol (5538.9304 without restraints) Performing minimization step: 3041. Total energy = 5547.7878 kcal/mol (5537.0760 without restraints) Performing minimization step: 3042. Total energy = 5545.9333 kcal/mol (5535.2234 without restraints) Performing minimization step: 3043. Total energy = 5544.0807 kcal/mol (5533.3728 without restraints) Performing minimization step: 3044. Total energy = 5542.2297 kcal/mol (5531.5237 without restraints) Performing minimization step: 3045. Total energy = 5540.3810 kcal/mol (5529.6770 without restraints) Performing minimization step: 3046. Total energy = 5538.5342 kcal/mol (5527.8323 without restraints) Performing minimization step: 3047. Total energy = 5536.6893 kcal/mol (5525.9894 without restraints) Performing minimization step: 3048. Total energy = 5534.8460 kcal/mol (5524.1479 without restraints) Performing minimization step: 3049. Total energy = 5533.0052 kcal/mol (5522.3091 without restraints) Performing minimization step: 3050. Total energy = 5531.1660 kcal/mol (5520.4719 without restraints) Performing minimization step: 3051. Total energy = 5529.3287 kcal/mol (5518.6366 without restraints) Performing minimization step: 3052. Total energy = 5527.4934 kcal/mol (5516.8032 without restraints) Performing minimization step: 3053. Total energy = 5525.6599 kcal/mol (5514.9717 without restraints) Performing minimization step: 3054. Total energy = 5523.8289 kcal/mol (5513.1426 without restraints) Performing minimization step: 3055. Total energy = 5521.9990 kcal/mol (5511.3148 without restraints) Performing minimization step: 3056. Total energy = 5520.1711 kcal/mol (5509.4887 without restraints) Performing minimization step: 3057. Total energy = 5518.3450 kcal/mol (5507.6646 without restraints) Performing minimization step: 3058. Total energy = 5516.5213 kcal/mol (5505.8429 without restraints) Performing minimization step: 3059. Total energy = 5514.6997 kcal/mol (5504.0235 without restraints) Performing minimization step: 3060. Total energy = 5512.8801 kcal/mol (5502.2056 without restraints) Performing minimization step: 3061. Total energy = 5511.0615 kcal/mol (5500.3889 without restraints) Performing minimization step: 3062. Total energy = 5509.2450 kcal/mol (5498.5745 without restraints) Performing minimization step: 3063. Total energy = 5507.4308 kcal/mol (5496.7623 without restraints) Performing minimization step: 3064. Total energy = 5505.6181 kcal/mol (5494.9515 without restraints) Performing minimization step: 3065. Total energy = 5503.8075 kcal/mol (5493.1429 without restraints) Performing minimization step: 3066. Total energy = 5501.9987 kcal/mol (5491.3362 without restraints) Performing minimization step: 3067. Total energy = 5500.1925 kcal/mol (5489.5321 without restraints) Performing minimization step: 3068. Total energy = 5498.3875 kcal/mol (5487.7287 without restraints) Performing minimization step: 3069. Total energy = 5496.5841 kcal/mol (5485.9274 without restraints) Performing minimization step: 3070. Total energy = 5494.7829 kcal/mol (5484.1283 without restraints) Performing minimization step: 3071. Total energy = 5492.9839 kcal/mol (5482.3313 without restraints) Performing minimization step: 3072. Total energy = 5491.1866 kcal/mol (5480.5359 without restraints) Performing minimization step: 3073. Total energy = 5489.3912 kcal/mol (5478.7424 without restraints) Performing minimization step: 3074. Total energy = 5487.5976 kcal/mol (5476.9508 without restraints) Performing minimization step: 3075. Total energy = 5485.8056 kcal/mol (5475.1608 without restraints) Performing minimization step: 3076. Total energy = 5484.0160 kcal/mol (5473.3733 without restraints) Performing minimization step: 3077. Total energy = 5482.2284 kcal/mol (5471.5876 without restraints) Performing minimization step: 3078. Total energy = 5480.4424 kcal/mol (5469.8034 without restraints) Performing minimization step: 3079. Total energy = 5478.6587 kcal/mol (5468.0217 without restraints) Performing minimization step: 3080. Total energy = 5476.8766 kcal/mol (5466.2416 without restraints) Performing minimization step: 3081. Total energy = 5475.0963 kcal/mol (5464.4634 without restraints) Performing minimization step: 3082. Total energy = 5473.3181 kcal/mol (5462.6870 without restraints) Performing minimization step: 3083. Total energy = 5471.5422 kcal/mol (5460.9132 without restraints) Performing minimization step: 3084. Total energy = 5469.7677 kcal/mol (5459.1406 without restraints) Performing minimization step: 3085. Total energy = 5467.9954 kcal/mol (5457.3704 without restraints) Performing minimization step: 3086. Total energy = 5466.2247 kcal/mol (5455.6015 without restraints) Performing minimization step: 3087. Total energy = 5464.4559 kcal/mol (5453.8348 without restraints) Performing minimization step: 3088. Total energy = 5462.6894 kcal/mol (5452.0703 without restraints) Performing minimization step: 3089. Total energy = 5460.9250 kcal/mol (5450.3078 without restraints) Performing minimization step: 3090. Total energy = 5459.1619 kcal/mol (5448.5469 without restraints) Performing minimization step: 3091. Total energy = 5457.4008 kcal/mol (5446.7875 without restraints) Performing minimization step: 3092. Total energy = 5455.6411 kcal/mol (5445.0298 without restraints) Performing minimization step: 3093. Total energy = 5453.8842 kcal/mol (5443.2748 without restraints) Performing minimization step: 3094. Total energy = 5452.1289 kcal/mol (5441.5218 without restraints) Performing minimization step: 3095. Total energy = 5450.3760 kcal/mol (5439.7707 without restraints) Performing minimization step: 3096. Total energy = 5448.6240 kcal/mol (5438.0207 without restraints) Performing minimization step: 3097. Total energy = 5446.8747 kcal/mol (5436.2733 without restraints) Performing minimization step: 3098. Total energy = 5445.1273 kcal/mol (5434.5279 without restraints) Performing minimization step: 3099. Total energy = 5443.3815 kcal/mol (5432.7841 without restraints) Performing minimization step: 3100. Total energy = 5441.6381 kcal/mol (5431.0426 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3101. Total energy = 5439.8959 kcal/mol (5429.3026 without restraints) Performing minimization step: 3102. Total energy = 5438.1560 kcal/mol (5427.5645 without restraints) Performing minimization step: 3103. Total energy = 5436.4178 kcal/mol (5425.8283 without restraints) Performing minimization step: 3104. Total energy = 5434.6819 kcal/mol (5424.0944 without restraints) Performing minimization step: 3105. Total energy = 5432.9476 kcal/mol (5422.3621 without restraints) Performing minimization step: 3106. Total energy = 5431.2150 kcal/mol (5420.6314 without restraints) Performing minimization step: 3107. Total energy = 5429.4847 kcal/mol (5418.9031 without restraints) Performing minimization step: 3108. Total energy = 5427.7560 kcal/mol (5417.1764 without restraints) Performing minimization step: 3109. Total energy = 5426.0295 kcal/mol (5415.4518 without restraints) Performing minimization step: 3110. Total energy = 5424.3050 kcal/mol (5413.7293 without restraints) Performing minimization step: 3111. Total energy = 5422.5824 kcal/mol (5412.0086 without restraints) Performing minimization step: 3112. Total energy = 5420.8618 kcal/mol (5410.2901 without restraints) Performing minimization step: 3113. Total energy = 5419.1429 kcal/mol (5408.5731 without restraints) Performing minimization step: 3114. Total energy = 5417.4258 kcal/mol (5406.8580 without restraints) Performing minimization step: 3115. Total energy = 5415.7105 kcal/mol (5405.1447 without restraints) Performing minimization step: 3116. Total energy = 5413.9974 kcal/mol (5403.4336 without restraints) Performing minimization step: 3117. Total energy = 5412.2860 kcal/mol (5401.7242 without restraints) Performing minimization step: 3118. Total energy = 5410.5763 kcal/mol (5400.0164 without restraints) Performing minimization step: 3119. Total energy = 5408.8689 kcal/mol (5398.3110 without restraints) Performing minimization step: 3120. Total energy = 5407.1634 kcal/mol (5396.6075 without restraints) Performing minimization step: 3121. Total energy = 5405.4599 kcal/mol (5394.9059 without restraints) Performing minimization step: 3122. Total energy = 5403.7581 kcal/mol (5393.2061 without restraints) Performing minimization step: 3123. Total energy = 5402.0583 kcal/mol (5391.5083 without restraints) Performing minimization step: 3124. Total energy = 5400.3602 kcal/mol (5389.8122 without restraints) Performing minimization step: 3125. Total energy = 5398.6640 kcal/mol (5388.1179 without restraints) Performing minimization step: 3126. Total energy = 5396.9701 kcal/mol (5386.4262 without restraints) Performing minimization step: 3127. Total energy = 5395.2781 kcal/mol (5384.7360 without restraints) Performing minimization step: 3128. Total energy = 5393.5877 kcal/mol (5383.0475 without restraints) Performing minimization step: 3129. Total energy = 5391.8990 kcal/mol (5381.3609 without restraints) Performing minimization step: 3130. Total energy = 5390.2126 kcal/mol (5379.6765 without restraints) Performing minimization step: 3131. Total energy = 5388.5277 kcal/mol (5377.9935 without restraints) Performing minimization step: 3132. Total energy = 5386.8449 kcal/mol (5376.3127 without restraints) Performing minimization step: 3133. Total energy = 5385.1641 kcal/mol (5374.6340 without restraints) Performing minimization step: 3134. Total energy = 5383.4855 kcal/mol (5372.9572 without restraints) Performing minimization step: 3135. Total energy = 5381.8085 kcal/mol (5371.2822 without restraints) Performing minimization step: 3136. Total energy = 5380.1330 kcal/mol (5369.6085 without restraints) Performing minimization step: 3137. Total energy = 5378.4592 kcal/mol (5367.9369 without restraints) Performing minimization step: 3138. Total energy = 5376.7876 kcal/mol (5366.2673 without restraints) Performing minimization step: 3139. Total energy = 5375.1180 kcal/mol (5364.5996 without restraints) Performing minimization step: 3140. Total energy = 5373.4505 kcal/mol (5362.9341 without restraints) Performing minimization step: 3141. Total energy = 5371.7846 kcal/mol (5361.2702 without restraints) Performing minimization step: 3142. Total energy = 5370.1210 kcal/mol (5359.6085 without restraints) Performing minimization step: 3143. Total energy = 5368.4590 kcal/mol (5357.9485 without restraints) Performing minimization step: 3144. Total energy = 5366.7987 kcal/mol (5356.2902 without restraints) Performing minimization step: 3145. Total energy = 5365.1405 kcal/mol (5354.6340 without restraints) Performing minimization step: 3146. Total energy = 5363.4842 kcal/mol (5352.9797 without restraints) Performing minimization step: 3147. Total energy = 5361.8298 kcal/mol (5351.3272 without restraints) Performing minimization step: 3148. Total energy = 5360.1769 kcal/mol (5349.6763 without restraints) Performing minimization step: 3149. Total energy = 5358.5260 kcal/mol (5348.0274 without restraints) Performing minimization step: 3150. Total energy = 5356.8770 kcal/mol (5346.3804 without restraints) Performing minimization step: 3151. Total energy = 5355.2299 kcal/mol (5344.7353 without restraints) Performing minimization step: 3152. Total energy = 5353.5849 kcal/mol (5343.0922 without restraints) Performing minimization step: 3153. Total energy = 5351.9419 kcal/mol (5341.4513 without restraints) Performing minimization step: 3154. Total energy = 5350.3004 kcal/mol (5339.8117 without restraints) Performing minimization step: 3155. Total energy = 5348.6608 kcal/mol (5338.1741 without restraints) Performing minimization step: 3156. Total energy = 5347.0231 kcal/mol (5336.5383 without restraints) Performing minimization step: 3157. Total energy = 5345.3872 kcal/mol (5334.9045 without restraints) Performing minimization step: 3158. Total energy = 5343.7535 kcal/mol (5333.2729 without restraints) Performing minimization step: 3159. Total energy = 5342.1215 kcal/mol (5331.6427 without restraints) Performing minimization step: 3160. Total energy = 5340.4914 kcal/mol (5330.0147 without restraints) Performing minimization step: 3161. Total energy = 5338.8634 kcal/mol (5328.3885 without restraints) Performing minimization step: 3162. Total energy = 5337.2370 kcal/mol (5326.7643 without restraints) Performing minimization step: 3163. Total energy = 5335.6127 kcal/mol (5325.1418 without restraints) Performing minimization step: 3164. Total energy = 5333.9899 kcal/mol (5323.5209 without restraints) Performing minimization step: 3165. Total energy = 5332.3694 kcal/mol (5321.9025 without restraints) Performing minimization step: 3166. Total energy = 5330.7506 kcal/mol (5320.2856 without restraints) Performing minimization step: 3167. Total energy = 5329.1334 kcal/mol (5318.6704 without restraints) Performing minimization step: 3168. Total energy = 5327.5184 kcal/mol (5317.0574 without restraints) Performing minimization step: 3169. Total energy = 5325.9051 kcal/mol (5315.4462 without restraints) Performing minimization step: 3170. Total energy = 5324.2938 kcal/mol (5313.8367 without restraints) Performing minimization step: 3171. Total energy = 5322.6843 kcal/mol (5312.2293 without restraints) Performing minimization step: 3172. Total energy = 5321.0764 kcal/mol (5310.6233 without restraints) Performing minimization step: 3173. Total energy = 5319.4705 kcal/mol (5309.0193 without restraints) Performing minimization step: 3174. Total energy = 5317.8664 kcal/mol (5307.4173 without restraints) Performing minimization step: 3175. Total energy = 5316.2644 kcal/mol (5305.8172 without restraints) Performing minimization step: 3176. Total energy = 5314.6637 kcal/mol (5304.2184 without restraints) Performing minimization step: 3177. Total energy = 5313.0649 kcal/mol (5302.6217 without restraints) Performing minimization step: 3178. Total energy = 5311.4682 kcal/mol (5301.0270 without restraints) Performing minimization step: 3179. Total energy = 5309.8734 kcal/mol (5299.4342 without restraints) Performing minimization step: 3180. Total energy = 5308.2803 kcal/mol (5297.8430 without restraints) Performing minimization step: 3181. Total energy = 5306.6887 kcal/mol (5296.2534 without restraints) Performing minimization step: 3182. Total energy = 5305.0992 kcal/mol (5294.6658 without restraints) Performing minimization step: 3183. Total energy = 5303.5113 kcal/mol (5293.0799 without restraints) Performing minimization step: 3184. Total energy = 5301.9252 kcal/mol (5291.4958 without restraints) Performing minimization step: 3185. Total energy = 5300.3411 kcal/mol (5289.9137 without restraints) Performing minimization step: 3186. Total energy = 5298.7590 kcal/mol (5288.3337 without restraints) Performing minimization step: 3187. Total energy = 5297.1783 kcal/mol (5286.7548 without restraints) Performing minimization step: 3188. Total energy = 5295.5998 kcal/mol (5285.1785 without restraints) Performing minimization step: 3189. Total energy = 5294.0229 kcal/mol (5283.6034 without restraints) Performing minimization step: 3190. Total energy = 5292.4480 kcal/mol (5282.0305 without restraints) Performing minimization step: 3191. Total energy = 5290.8748 kcal/mol (5280.4591 without restraints) Performing minimization step: 3192. Total energy = 5289.3037 kcal/mol (5278.8902 without restraints) Performing minimization step: 3193. Total energy = 5287.7345 kcal/mol (5277.3229 without restraints) Performing minimization step: 3194. Total energy = 5286.1669 kcal/mol (5275.7573 without restraints) Performing minimization step: 3195. Total energy = 5284.6012 kcal/mol (5274.1936 without restraints) Performing minimization step: 3196. Total energy = 5283.0375 kcal/mol (5272.6318 without restraints) Performing minimization step: 3197. Total energy = 5281.4753 kcal/mol (5271.0717 without restraints) Performing minimization step: 3198. Total energy = 5279.9152 kcal/mol (5269.5136 without restraints) Performing minimization step: 3199. Total energy = 5278.3570 kcal/mol (5267.9572 without restraints) Performing minimization step: 3200. Total energy = 5276.8005 kcal/mol (5266.4029 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3201. Total energy = 5275.2457 kcal/mol (5264.8499 without restraints) Performing minimization step: 3202. Total energy = 5273.6924 kcal/mol (5263.2986 without restraints) Performing minimization step: 3203. Total energy = 5272.1411 kcal/mol (5261.7492 without restraints) Performing minimization step: 3204. Total energy = 5270.5917 kcal/mol (5260.2018 without restraints) Performing minimization step: 3205. Total energy = 5269.0443 kcal/mol (5258.6564 without restraints) Performing minimization step: 3206. Total energy = 5267.4984 kcal/mol (5257.1125 without restraints) Performing minimization step: 3207. Total energy = 5265.9548 kcal/mol (5255.5710 without restraints) Performing minimization step: 3208. Total energy = 5264.4128 kcal/mol (5254.0308 without restraints) Performing minimization step: 3209. Total energy = 5262.8722 kcal/mol (5252.4922 without restraints) Performing minimization step: 3210. Total energy = 5261.3336 kcal/mol (5250.9556 without restraints) Performing minimization step: 3211. Total energy = 5259.7968 kcal/mol (5249.4208 without restraints) Performing minimization step: 3212. Total energy = 5258.2618 kcal/mol (5247.8878 without restraints) Performing minimization step: 3213. Total energy = 5256.7283 kcal/mol (5246.3561 without restraints) Performing minimization step: 3214. Total energy = 5255.1970 kcal/mol (5244.8268 without restraints) Performing minimization step: 3215. Total energy = 5253.6670 kcal/mol (5243.2989 without restraints) Performing minimization step: 3216. Total energy = 5252.1392 kcal/mol (5241.7732 without restraints) Performing minimization step: 3217. Total energy = 5250.6132 kcal/mol (5240.2491 without restraints) Performing minimization step: 3218. Total energy = 5249.0887 kcal/mol (5238.7265 without restraints) Performing minimization step: 3219. Total energy = 5247.5659 kcal/mol (5237.2057 without restraints) Performing minimization step: 3220. Total energy = 5246.0449 kcal/mol (5235.6867 without restraints) Performing minimization step: 3221. Total energy = 5244.5258 kcal/mol (5234.1696 without restraints) Performing minimization step: 3222. Total energy = 5243.0091 kcal/mol (5232.6548 without restraints) Performing minimization step: 3223. Total energy = 5241.4936 kcal/mol (5231.1413 without restraints) Performing minimization step: 3224. Total energy = 5239.9802 kcal/mol (5229.6299 without restraints) Performing minimization step: 3225. Total energy = 5238.4677 kcal/mol (5228.1193 without restraints) Performing minimization step: 3226. Total energy = 5236.9571 kcal/mol (5226.6105 without restraints) Performing minimization step: 3227. Total energy = 5235.4487 kcal/mol (5225.1042 without restraints) Performing minimization step: 3228. Total energy = 5233.9418 kcal/mol (5223.5993 without restraints) Performing minimization step: 3229. Total energy = 5232.4370 kcal/mol (5222.0965 without restraints) Performing minimization step: 3230. Total energy = 5230.9335 kcal/mol (5220.5950 without restraints) Performing minimization step: 3231. Total energy = 5229.4315 kcal/mol (5219.0949 without restraints) Performing minimization step: 3232. Total energy = 5227.9319 kcal/mol (5217.5974 without restraints) Performing minimization step: 3233. Total energy = 5226.4338 kcal/mol (5216.1012 without restraints) Performing minimization step: 3234. Total energy = 5224.9373 kcal/mol (5214.6066 without restraints) Performing minimization step: 3235. Total energy = 5223.4429 kcal/mol (5213.1142 without restraints) Performing minimization step: 3236. Total energy = 5221.9505 kcal/mol (5211.6238 without restraints) Performing minimization step: 3237. Total energy = 5220.4595 kcal/mol (5210.1349 without restraints) Performing minimization step: 3238. Total energy = 5218.9703 kcal/mol (5208.6475 without restraints) Performing minimization step: 3239. Total energy = 5217.4828 kcal/mol (5207.1621 without restraints) Performing minimization step: 3240. Total energy = 5215.9970 kcal/mol (5205.6782 without restraints) Performing minimization step: 3241. Total energy = 5214.5127 kcal/mol (5204.1959 without restraints) Performing minimization step: 3242. Total energy = 5213.0301 kcal/mol (5202.7152 without restraints) Performing minimization step: 3243. Total energy = 5211.5491 kcal/mol (5201.2362 without restraints) Performing minimization step: 3244. Total energy = 5210.0697 kcal/mol (5199.7588 without restraints) Performing minimization step: 3245. Total energy = 5208.5923 kcal/mol (5198.2833 without restraints) Performing minimization step: 3246. Total energy = 5207.1163 kcal/mol (5196.8093 without restraints) Performing minimization step: 3247. Total energy = 5205.6425 kcal/mol (5195.3374 without restraints) Performing minimization step: 3248. Total energy = 5204.1699 kcal/mol (5193.8668 without restraints) Performing minimization step: 3249. Total energy = 5202.6993 kcal/mol (5192.3982 without restraints) Performing minimization step: 3250. Total energy = 5201.2306 kcal/mol (5190.9315 without restraints) Performing minimization step: 3251. Total energy = 5199.7631 kcal/mol (5189.4659 without restraints) Performing minimization step: 3252. Total energy = 5198.2981 kcal/mol (5188.0029 without restraints) Performing minimization step: 3253. Total energy = 5196.8341 kcal/mol (5186.5408 without restraints) Performing minimization step: 3254. Total energy = 5195.3722 kcal/mol (5185.0808 without restraints) Performing minimization step: 3255. Total energy = 5193.9116 kcal/mol (5183.6224 without restraints) Performing minimization step: 3256. Total energy = 5192.4530 kcal/mol (5182.1657 without restraints) Performing minimization step: 3257. Total energy = 5190.9965 kcal/mol (5180.7111 without restraints) Performing minimization step: 3258. Total energy = 5189.5414 kcal/mol (5179.2580 without restraints) Performing minimization step: 3259. Total energy = 5188.0878 kcal/mol (5177.8064 without restraints) Performing minimization step: 3260. Total energy = 5186.6359 kcal/mol (5176.3564 without restraints) Performing minimization step: 3261. Total energy = 5185.1863 kcal/mol (5174.9088 without restraints) Performing minimization step: 3262. Total energy = 5183.7379 kcal/mol (5173.4624 without restraints) Performing minimization step: 3263. Total energy = 5182.2910 kcal/mol (5172.0174 without restraints) Performing minimization step: 3264. Total energy = 5180.8453 kcal/mol (5170.5737 without restraints) Performing minimization step: 3265. Total energy = 5179.4018 kcal/mol (5169.1323 without restraints) Performing minimization step: 3266. Total energy = 5177.9601 kcal/mol (5167.6924 without restraints) Performing minimization step: 3267. Total energy = 5176.5198 kcal/mol (5166.2541 without restraints) Performing minimization step: 3268. Total energy = 5175.0814 kcal/mol (5164.8177 without restraints) Performing minimization step: 3269. Total energy = 5173.6445 kcal/mol (5163.3827 without restraints) Performing minimization step: 3270. Total energy = 5172.2094 kcal/mol (5161.9495 without restraints) Performing minimization step: 3271. Total energy = 5170.7760 kcal/mol (5160.5182 without restraints) Performing minimization step: 3272. Total energy = 5169.3441 kcal/mol (5159.0883 without restraints) Performing minimization step: 3273. Total energy = 5167.9139 kcal/mol (5157.6599 without restraints) Performing minimization step: 3274. Total energy = 5166.4851 kcal/mol (5156.2332 without restraints) Performing minimization step: 3275. Total energy = 5165.0580 kcal/mol (5154.8082 without restraints) Performing minimization step: 3276. Total energy = 5163.6328 kcal/mol (5153.3848 without restraints) Performing minimization step: 3277. Total energy = 5162.2092 kcal/mol (5151.9631 without restraints) Performing minimization step: 3278. Total energy = 5160.7871 kcal/mol (5150.5430 without restraints) Performing minimization step: 3279. Total energy = 5159.3665 kcal/mol (5149.1244 without restraints) Performing minimization step: 3280. Total energy = 5157.9480 kcal/mol (5147.7080 without restraints) Performing minimization step: 3281. Total energy = 5156.5311 kcal/mol (5146.2929 without restraints) Performing minimization step: 3282. Total energy = 5155.1162 kcal/mol (5144.8800 without restraints) Performing minimization step: 3283. Total energy = 5153.7025 kcal/mol (5143.4683 without restraints) Performing minimization step: 3284. Total energy = 5152.2903 kcal/mol (5142.0580 without restraints) Performing minimization step: 3285. Total energy = 5150.8799 kcal/mol (5140.6495 without restraints) Performing minimization step: 3286. Total energy = 5149.4710 kcal/mol (5139.2426 without restraints) Performing minimization step: 3287. Total energy = 5148.0639 kcal/mol (5137.8374 without restraints) Performing minimization step: 3288. Total energy = 5146.6581 kcal/mol (5136.4337 without restraints) Performing minimization step: 3289. Total energy = 5145.2543 kcal/mol (5135.0318 without restraints) Performing minimization step: 3290. Total energy = 5143.8520 kcal/mol (5133.6314 without restraints) Performing minimization step: 3291. Total energy = 5142.4510 kcal/mol (5132.2324 without restraints) Performing minimization step: 3292. Total energy = 5141.0520 kcal/mol (5130.8355 without restraints) Performing minimization step: 3293. Total energy = 5139.6546 kcal/mol (5129.4399 without restraints) Performing minimization step: 3294. Total energy = 5138.2588 kcal/mol (5128.0461 without restraints) Performing minimization step: 3295. Total energy = 5136.8646 kcal/mol (5126.6538 without restraints) Performing minimization step: 3296. Total energy = 5135.4720 kcal/mol (5125.2633 without restraints) Performing minimization step: 3297. Total energy = 5134.0811 kcal/mol (5123.8742 without restraints) Performing minimization step: 3298. Total energy = 5132.6911 kcal/mol (5122.4862 without restraints) Performing minimization step: 3299. Total energy = 5131.3037 kcal/mol (5121.1008 without restraints) Performing minimization step: 3300. Total energy = 5129.9172 kcal/mol (5119.7163 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3301. Total energy = 5128.5326 kcal/mol (5118.3337 without restraints) Performing minimization step: 3302. Total energy = 5127.1497 kcal/mol (5116.9526 without restraints) Performing minimization step: 3303. Total energy = 5125.7679 kcal/mol (5115.5728 without restraints) Performing minimization step: 3304. Total energy = 5124.3877 kcal/mol (5114.1945 without restraints) Performing minimization step: 3305. Total energy = 5123.0087 kcal/mol (5112.8175 without restraints) Performing minimization step: 3306. Total energy = 5121.6316 kcal/mol (5111.4423 without restraints) Performing minimization step: 3307. Total energy = 5120.2563 kcal/mol (5110.0690 without restraints) Performing minimization step: 3308. Total energy = 5118.8824 kcal/mol (5108.6970 without restraints) Performing minimization step: 3309. Total energy = 5117.5098 kcal/mol (5107.3264 without restraints) Performing minimization step: 3310. Total energy = 5116.1392 kcal/mol (5105.9578 without restraints) Performing minimization step: 3311. Total energy = 5114.7700 kcal/mol (5104.5905 without restraints) Performing minimization step: 3312. Total energy = 5113.4023 kcal/mol (5103.2248 without restraints) Performing minimization step: 3313. Total energy = 5112.0362 kcal/mol (5101.8606 without restraints) Performing minimization step: 3314. Total energy = 5110.6717 kcal/mol (5100.4981 without restraints) Performing minimization step: 3315. Total energy = 5109.3090 kcal/mol (5099.1374 without restraints) Performing minimization step: 3316. Total energy = 5107.9482 kcal/mol (5097.7785 without restraints) Performing minimization step: 3317. Total energy = 5106.5883 kcal/mol (5096.4205 without restraints) Performing minimization step: 3318. Total energy = 5105.2303 kcal/mol (5095.0645 without restraints) Performing minimization step: 3319. Total energy = 5103.8735 kcal/mol (5093.7096 without restraints) Performing minimization step: 3320. Total energy = 5102.5183 kcal/mol (5092.3564 without restraints) Performing minimization step: 3321. Total energy = 5101.1648 kcal/mol (5091.0048 without restraints) Performing minimization step: 3322. Total energy = 5099.8127 kcal/mol (5089.6547 without restraints) Performing minimization step: 3323. Total energy = 5098.4623 kcal/mol (5088.3062 without restraints) Performing minimization step: 3324. Total energy = 5097.1131 kcal/mol (5086.9590 without restraints) Performing minimization step: 3325. Total energy = 5095.7657 kcal/mol (5085.6136 without restraints) Performing minimization step: 3326. Total energy = 5094.4196 kcal/mol (5084.2694 without restraints) Performing minimization step: 3327. Total energy = 5093.0750 kcal/mol (5082.9267 without restraints) Performing minimization step: 3328. Total energy = 5091.7320 kcal/mol (5081.5858 without restraints) Performing minimization step: 3329. Total energy = 5090.3904 kcal/mol (5080.2461 without restraints) Performing minimization step: 3330. Total energy = 5089.0505 kcal/mol (5078.9080 without restraints) Performing minimization step: 3331. Total energy = 5087.7121 kcal/mol (5077.5716 without restraints) Performing minimization step: 3332. Total energy = 5086.3755 kcal/mol (5076.2369 without restraints) Performing minimization step: 3333. Total energy = 5085.0400 kcal/mol (5074.9034 without restraints) Performing minimization step: 3334. Total energy = 5083.7065 kcal/mol (5073.5720 without restraints) Performing minimization step: 3335. Total energy = 5082.3741 kcal/mol (5072.2413 without restraints) Performing minimization step: 3336. Total energy = 5081.0435 kcal/mol (5070.9127 without restraints) Performing minimization step: 3337. Total energy = 5079.7143 kcal/mol (5069.5855 without restraints) Performing minimization step: 3338. Total energy = 5078.3863 kcal/mol (5068.2594 without restraints) Performing minimization step: 3339. Total energy = 5077.0603 kcal/mol (5066.9355 without restraints) Performing minimization step: 3340. Total energy = 5075.7352 kcal/mol (5065.6123 without restraints) Performing minimization step: 3341. Total energy = 5074.4117 kcal/mol (5064.2907 without restraints) Performing minimization step: 3342. Total energy = 5073.0897 kcal/mol (5062.9706 without restraints) Performing minimization step: 3343. Total energy = 5071.7694 kcal/mol (5061.6523 without restraints) Performing minimization step: 3344. Total energy = 5070.4501 kcal/mol (5060.3349 without restraints) Performing minimization step: 3345. Total energy = 5069.1328 kcal/mol (5059.0196 without restraints) Performing minimization step: 3346. Total energy = 5067.8167 kcal/mol (5057.7054 without restraints) Performing minimization step: 3347. Total energy = 5066.5021 kcal/mol (5056.3927 without restraints) Performing minimization step: 3348. Total energy = 5065.1889 kcal/mol (5055.0815 without restraints) Performing minimization step: 3349. Total energy = 5063.8771 kcal/mol (5053.7716 without restraints) Performing minimization step: 3350. Total energy = 5062.5667 kcal/mol (5052.4630 without restraints) Performing minimization step: 3351. Total energy = 5061.2577 kcal/mol (5051.1561 without restraints) Performing minimization step: 3352. Total energy = 5059.9504 kcal/mol (5049.8507 without restraints) Performing minimization step: 3353. Total energy = 5058.6450 kcal/mol (5048.5472 without restraints) Performing minimization step: 3354. Total energy = 5057.3407 kcal/mol (5047.2449 without restraints) Performing minimization step: 3355. Total energy = 5056.0375 kcal/mol (5045.9436 without restraints) Performing minimization step: 3356. Total energy = 5054.7361 kcal/mol (5044.6442 without restraints) Performing minimization step: 3357. Total energy = 5053.4364 kcal/mol (5043.3466 without restraints) Performing minimization step: 3358. Total energy = 5052.1378 kcal/mol (5042.0496 without restraints) Performing minimization step: 3359. Total energy = 5050.8407 kcal/mol (5040.7546 without restraints) Performing minimization step: 3360. Total energy = 5049.5449 kcal/mol (5039.4607 without restraints) Performing minimization step: 3361. Total energy = 5048.2506 kcal/mol (5038.1683 without restraints) Performing minimization step: 3362. Total energy = 5046.9575 kcal/mol (5036.8772 without restraints) Performing minimization step: 3363. Total energy = 5045.6662 kcal/mol (5035.5877 without restraints) Performing minimization step: 3364. Total energy = 5044.3760 kcal/mol (5034.2996 without restraints) Performing minimization step: 3365. Total energy = 5043.0876 kcal/mol (5033.0131 without restraints) Performing minimization step: 3366. Total energy = 5041.8006 kcal/mol (5031.7279 without restraints) Performing minimization step: 3367. Total energy = 5040.5150 kcal/mol (5030.4446 without restraints) Performing minimization step: 3368. Total energy = 5039.2308 kcal/mol (5029.1621 without restraints) Performing minimization step: 3369. Total energy = 5037.9479 kcal/mol (5027.8810 without restraints) Performing minimization step: 3370. Total energy = 5036.6664 kcal/mol (5026.6016 without restraints) Performing minimization step: 3371. Total energy = 5035.3865 kcal/mol (5025.3236 without restraints) Performing minimization step: 3372. Total energy = 5034.1081 kcal/mol (5024.0470 without restraints) Performing minimization step: 3373. Total energy = 5032.8317 kcal/mol (5022.7727 without restraints) Performing minimization step: 3374. Total energy = 5031.5558 kcal/mol (5021.4987 without restraints) Performing minimization step: 3375. Total energy = 5030.2813 kcal/mol (5020.2261 without restraints) Performing minimization step: 3376. Total energy = 5029.0082 kcal/mol (5018.9550 without restraints) Performing minimization step: 3377. Total energy = 5027.7366 kcal/mol (5017.6853 without restraints) Performing minimization step: 3378. Total energy = 5026.4670 kcal/mol (5016.4176 without restraints) Performing minimization step: 3379. Total energy = 5025.1982 kcal/mol (5015.1509 without restraints) Performing minimization step: 3380. Total energy = 5023.9308 kcal/mol (5013.8852 without restraints) Performing minimization step: 3381. Total energy = 5022.6650 kcal/mol (5012.6213 without restraints) Performing minimization step: 3382. Total energy = 5021.4001 kcal/mol (5011.3584 without restraints) Performing minimization step: 3383. Total energy = 5020.1367 kcal/mol (5010.0969 without restraints) Performing minimization step: 3384. Total energy = 5018.8748 kcal/mol (5008.8369 without restraints) Performing minimization step: 3385. Total energy = 5017.6141 kcal/mol (5007.5781 without restraints) Performing minimization step: 3386. Total energy = 5016.3550 kcal/mol (5006.3210 without restraints) Performing minimization step: 3387. Total energy = 5015.0974 kcal/mol (5005.0653 without restraints) Performing minimization step: 3388. Total energy = 5013.8409 kcal/mol (5003.8107 without restraints) Performing minimization step: 3389. Total energy = 5012.5857 kcal/mol (5002.5574 without restraints) Performing minimization step: 3390. Total energy = 5011.3318 kcal/mol (5001.3055 without restraints) Performing minimization step: 3391. Total energy = 5010.0796 kcal/mol (5000.0552 without restraints) Performing minimization step: 3392. Total energy = 5008.8289 kcal/mol (4998.8065 without restraints) Performing minimization step: 3393. Total energy = 5007.5790 kcal/mol (4997.5584 without restraints) Performing minimization step: 3394. Total energy = 5006.3305 kcal/mol (4996.3119 without restraints) Performing minimization step: 3395. Total energy = 5005.0835 kcal/mol (4995.0668 without restraints) Performing minimization step: 3396. Total energy = 5003.8384 kcal/mol (4993.8237 without restraints) Performing minimization step: 3397. Total energy = 5002.5943 kcal/mol (4992.5814 without restraints) Performing minimization step: 3398. Total energy = 5001.3514 kcal/mol (4991.3405 without restraints) Performing minimization step: 3399. Total energy = 5000.1098 kcal/mol (4990.1007 without restraints) Performing minimization step: 3400. Total energy = 4998.8695 kcal/mol (4988.8623 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3401. Total energy = 4997.6304 kcal/mol (4987.6252 without restraints) Performing minimization step: 3402. Total energy = 4996.3929 kcal/mol (4986.3897 without restraints) Performing minimization step: 3403. Total energy = 4995.1571 kcal/mol (4985.1558 without restraints) Performing minimization step: 3404. Total energy = 4993.9220 kcal/mol (4983.9225 without restraints) Performing minimization step: 3405. Total energy = 4992.6882 kcal/mol (4982.6907 without restraints) Performing minimization step: 3406. Total energy = 4991.4565 kcal/mol (4981.4609 without restraints) Performing minimization step: 3407. Total energy = 4990.2255 kcal/mol (4980.2318 without restraints) Performing minimization step: 3408. Total energy = 4988.9961 kcal/mol (4979.0043 without restraints) Performing minimization step: 3409. Total energy = 4987.7674 kcal/mol (4977.7775 without restraints) Performing minimization step: 3410. Total energy = 4986.5409 kcal/mol (4976.5530 without restraints) Performing minimization step: 3411. Total energy = 4985.3152 kcal/mol (4975.3292 without restraints) Performing minimization step: 3412. Total energy = 4984.0911 kcal/mol (4974.1071 without restraints) Performing minimization step: 3413. Total energy = 4982.8681 kcal/mol (4972.8859 without restraints) Performing minimization step: 3414. Total energy = 4981.6463 kcal/mol (4971.6659 without restraints) Performing minimization step: 3415. Total energy = 4980.4255 kcal/mol (4970.4471 without restraints) Performing minimization step: 3416. Total energy = 4979.2062 kcal/mol (4969.2297 without restraints) Performing minimization step: 3417. Total energy = 4977.9887 kcal/mol (4968.0141 without restraints) Performing minimization step: 3418. Total energy = 4976.7723 kcal/mol (4966.7996 without restraints) Performing minimization step: 3419. Total energy = 4975.5574 kcal/mol (4965.5867 without restraints) Performing minimization step: 3420. Total energy = 4974.3434 kcal/mol (4964.3746 without restraints) Performing minimization step: 3421. Total energy = 4973.1309 kcal/mol (4963.1639 without restraints) Performing minimization step: 3422. Total energy = 4971.9195 kcal/mol (4961.9544 without restraints) Performing minimization step: 3423. Total energy = 4970.7093 kcal/mol (4960.7461 without restraints) Performing minimization step: 3424. Total energy = 4969.5003 kcal/mol (4959.5391 without restraints) Performing minimization step: 3425. Total energy = 4968.2929 kcal/mol (4958.3337 without restraints) Performing minimization step: 3426. Total energy = 4967.0866 kcal/mol (4957.1292 without restraints) Performing minimization step: 3427. Total energy = 4965.8819 kcal/mol (4955.9264 without restraints) Performing minimization step: 3428. Total energy = 4964.6782 kcal/mol (4954.7246 without restraints) Performing minimization step: 3429. Total energy = 4963.4760 kcal/mol (4953.5245 without restraints) Performing minimization step: 3430. Total energy = 4962.2751 kcal/mol (4952.3253 without restraints) Performing minimization step: 3431. Total energy = 4961.0750 kcal/mol (4951.1271 without restraints) Performing minimization step: 3432. Total energy = 4959.8768 kcal/mol (4949.9309 without restraints) Performing minimization step: 3433. Total energy = 4958.6793 kcal/mol (4948.7352 without restraints) Performing minimization step: 3434. Total energy = 4957.4830 kcal/mol (4947.5408 without restraints) Performing minimization step: 3435. Total energy = 4956.2880 kcal/mol (4946.3477 without restraints) Performing minimization step: 3436. Total energy = 4955.0945 kcal/mol (4945.1561 without restraints) Performing minimization step: 3437. Total energy = 4953.9020 kcal/mol (4943.9655 without restraints) Performing minimization step: 3438. Total energy = 4952.7110 kcal/mol (4942.7764 without restraints) Performing minimization step: 3439. Total energy = 4951.5210 kcal/mol (4941.5883 without restraints) Performing minimization step: 3440. Total energy = 4950.3327 kcal/mol (4940.4020 without restraints) Performing minimization step: 3441. Total energy = 4949.1454 kcal/mol (4939.2165 without restraints) Performing minimization step: 3442. Total energy = 4947.9592 kcal/mol (4938.0322 without restraints) Performing minimization step: 3443. Total energy = 4946.7739 kcal/mol (4936.8488 without restraints) Performing minimization step: 3444. Total energy = 4945.5907 kcal/mol (4935.6675 without restraints) Performing minimization step: 3445. Total energy = 4944.4085 kcal/mol (4934.4872 without restraints) Performing minimization step: 3446. Total energy = 4943.2271 kcal/mol (4933.3077 without restraints) Performing minimization step: 3447. Total energy = 4942.0474 kcal/mol (4932.1299 without restraints) Performing minimization step: 3448. Total energy = 4940.8686 kcal/mol (4930.9529 without restraints) Performing minimization step: 3449. Total energy = 4939.6912 kcal/mol (4929.7774 without restraints) Performing minimization step: 3450. Total energy = 4938.5151 kcal/mol (4928.6033 without restraints) Performing minimization step: 3451. Total energy = 4937.3402 kcal/mol (4927.4302 without restraints) Performing minimization step: 3452. Total energy = 4936.1661 kcal/mol (4926.2581 without restraints) Performing minimization step: 3453. Total energy = 4934.9937 kcal/mol (4925.0875 without restraints) Performing minimization step: 3454. Total energy = 4933.8224 kcal/mol (4923.9181 without restraints) Performing minimization step: 3455. Total energy = 4932.6523 kcal/mol (4922.7500 without restraints) Performing minimization step: 3456. Total energy = 4931.4832 kcal/mol (4921.5826 without restraints) Performing minimization step: 3457. Total energy = 4930.3152 kcal/mol (4920.4166 without restraints) Performing minimization step: 3458. Total energy = 4929.1483 kcal/mol (4919.2515 without restraints) Performing minimization step: 3459. Total energy = 4927.9830 kcal/mol (4918.0882 without restraints) Performing minimization step: 3460. Total energy = 4926.8189 kcal/mol (4916.9260 without restraints) Performing minimization step: 3461. Total energy = 4925.6558 kcal/mol (4915.7647 without restraints) Performing minimization step: 3462. Total energy = 4924.4938 kcal/mol (4914.6046 without restraints) Performing minimization step: 3463. Total energy = 4923.3335 kcal/mol (4913.4461 without restraints) Performing minimization step: 3464. Total energy = 4922.1741 kcal/mol (4912.2886 without restraints) Performing minimization step: 3465. Total energy = 4921.0157 kcal/mol (4911.1322 without restraints) Performing minimization step: 3466. Total energy = 4919.8586 kcal/mol (4909.9770 without restraints) Performing minimization step: 3467. Total energy = 4918.7029 kcal/mol (4908.8231 without restraints) Performing minimization step: 3468. Total energy = 4917.5480 kcal/mol (4907.6701 without restraints) Performing minimization step: 3469. Total energy = 4916.3946 kcal/mol (4906.5185 without restraints) Performing minimization step: 3470. Total energy = 4915.2421 kcal/mol (4905.3679 without restraints) Performing minimization step: 3471. Total energy = 4914.0909 kcal/mol (4904.2187 without restraints) Performing minimization step: 3472. Total energy = 4912.9408 kcal/mol (4903.0705 without restraints) Performing minimization step: 3473. Total energy = 4911.7924 kcal/mol (4901.9239 without restraints) Performing minimization step: 3474. Total energy = 4910.6447 kcal/mol (4900.7780 without restraints) Performing minimization step: 3475. Total energy = 4909.4977 kcal/mol (4899.6329 without restraints) Performing minimization step: 3476. Total energy = 4908.3524 kcal/mol (4898.4895 without restraints) Performing minimization step: 3477. Total energy = 4907.2082 kcal/mol (4897.3472 without restraints) Performing minimization step: 3478. Total energy = 4906.0649 kcal/mol (4896.2058 without restraints) Performing minimization step: 3479. Total energy = 4904.9230 kcal/mol (4895.0658 without restraints) Performing minimization step: 3480. Total energy = 4903.7823 kcal/mol (4893.9270 without restraints) Performing minimization step: 3481. Total energy = 4902.6428 kcal/mol (4892.7894 without restraints) Performing minimization step: 3482. Total energy = 4901.5043 kcal/mol (4891.6526 without restraints) Performing minimization step: 3483. Total energy = 4900.3671 kcal/mol (4890.5174 without restraints) Performing minimization step: 3484. Total energy = 4899.2310 kcal/mol (4889.3831 without restraints) Performing minimization step: 3485. Total energy = 4898.0956 kcal/mol (4888.2497 without restraints) Performing minimization step: 3486. Total energy = 4896.9617 kcal/mol (4887.1176 without restraints) Performing minimization step: 3487. Total energy = 4895.8289 kcal/mol (4885.9867 without restraints) Performing minimization step: 3488. Total energy = 4894.6973 kcal/mol (4884.8569 without restraints) Performing minimization step: 3489. Total energy = 4893.5668 kcal/mol (4883.7283 without restraints) Performing minimization step: 3490. Total energy = 4892.4374 kcal/mol (4882.6007 without restraints) Performing minimization step: 3491. Total energy = 4891.3091 kcal/mol (4881.4744 without restraints) Performing minimization step: 3492. Total energy = 4890.1820 kcal/mol (4880.3491 without restraints) Performing minimization step: 3493. Total energy = 4889.0561 kcal/mol (4879.2250 without restraints) Performing minimization step: 3494. Total energy = 4887.9313 kcal/mol (4878.1021 without restraints) Performing minimization step: 3495. Total energy = 4886.8079 kcal/mol (4876.9806 without restraints) Performing minimization step: 3496. Total energy = 4885.6852 kcal/mol (4875.8598 without restraints) Performing minimization step: 3497. Total energy = 4884.5642 kcal/mol (4874.7406 without restraints) Performing minimization step: 3498. Total energy = 4883.4439 kcal/mol (4873.6222 without restraints) Performing minimization step: 3499. Total energy = 4882.3249 kcal/mol (4872.5050 without restraints) Performing minimization step: 3500. Total energy = 4881.2067 kcal/mol (4871.3887 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3501. Total energy = 4880.0899 kcal/mol (4870.2738 without restraints) Performing minimization step: 3502. Total energy = 4878.9742 kcal/mol (4869.1601 without restraints) Performing minimization step: 3503. Total energy = 4877.8589 kcal/mol (4868.0465 without restraints) Performing minimization step: 3504. Total energy = 4876.7452 kcal/mol (4866.9346 without restraints) Performing minimization step: 3505. Total energy = 4875.6326 kcal/mol (4865.8239 without restraints) Performing minimization step: 3506. Total energy = 4874.5213 kcal/mol (4864.7145 without restraints) Performing minimization step: 3507. Total energy = 4873.4109 kcal/mol (4863.6059 without restraints) Performing minimization step: 3508. Total energy = 4872.3013 kcal/mol (4862.4981 without restraints) Performing minimization step: 3509. Total energy = 4871.1930 kcal/mol (4861.3917 without restraints) Performing minimization step: 3510. Total energy = 4870.0862 kcal/mol (4860.2868 without restraints) Performing minimization step: 3511. Total energy = 4868.9804 kcal/mol (4859.1829 without restraints) Performing minimization step: 3512. Total energy = 4867.8761 kcal/mol (4858.0807 without restraints) Performing minimization step: 3513. Total energy = 4866.7726 kcal/mol (4856.9787 without restraints) Performing minimization step: 3514. Total energy = 4865.6698 kcal/mol (4855.8779 without restraints) Performing minimization step: 3515. Total energy = 4864.5685 kcal/mol (4854.7784 without restraints) Performing minimization step: 3516. Total energy = 4863.4679 kcal/mol (4853.6797 without restraints) Performing minimization step: 3517. Total energy = 4862.3685 kcal/mol (4852.5823 without restraints) Performing minimization step: 3518. Total energy = 4861.2709 kcal/mol (4851.4864 without restraints) Performing minimization step: 3519. Total energy = 4860.1736 kcal/mol (4850.3908 without restraints) Performing minimization step: 3520. Total energy = 4859.0772 kcal/mol (4849.2964 without restraints) Performing minimization step: 3521. Total energy = 4857.9821 kcal/mol (4848.2031 without restraints) Performing minimization step: 3522. Total energy = 4856.8880 kcal/mol (4847.1108 without restraints) Performing minimization step: 3523. Total energy = 4855.7954 kcal/mol (4846.0201 without restraints) Performing minimization step: 3524. Total energy = 4854.7035 kcal/mol (4844.9301 without restraints) Performing minimization step: 3525. Total energy = 4853.6126 kcal/mol (4843.8410 without restraints) Performing minimization step: 3526. Total energy = 4852.5227 kcal/mol (4842.7530 without restraints) Performing minimization step: 3527. Total energy = 4851.4338 kcal/mol (4841.6658 without restraints) Performing minimization step: 3528. Total energy = 4850.3460 kcal/mol (4840.5800 without restraints) Performing minimization step: 3529. Total energy = 4849.2593 kcal/mol (4839.4951 without restraints) Performing minimization step: 3530. Total energy = 4848.1735 kcal/mol (4838.4111 without restraints) Performing minimization step: 3531. Total energy = 4847.0887 kcal/mol (4837.3282 without restraints) Performing minimization step: 3532. Total energy = 4846.0056 kcal/mol (4836.2469 without restraints) Performing minimization step: 3533. Total energy = 4844.9231 kcal/mol (4835.1663 without restraints) Performing minimization step: 3534. Total energy = 4843.8417 kcal/mol (4834.0867 without restraints) Performing minimization step: 3535. Total energy = 4842.7614 kcal/mol (4833.0082 without restraints) Performing minimization step: 3536. Total energy = 4841.6823 kcal/mol (4831.9310 without restraints) Performing minimization step: 3537. Total energy = 4840.6042 kcal/mol (4830.8546 without restraints) Performing minimization step: 3538. Total energy = 4839.5269 kcal/mol (4829.7792 without restraints) Performing minimization step: 3539. Total energy = 4838.4508 kcal/mol (4828.7052 without restraints) Performing minimization step: 3540. Total energy = 4837.3762 kcal/mol (4827.6322 without restraints) Performing minimization step: 3541. Total energy = 4836.3021 kcal/mol (4826.5599 without restraints) Performing minimization step: 3542. Total energy = 4835.2294 kcal/mol (4825.4891 without restraints) Performing minimization step: 3543. Total energy = 4834.1576 kcal/mol (4824.4192 without restraints) Performing minimization step: 3544. Total energy = 4833.0867 kcal/mol (4823.3501 without restraints) Performing minimization step: 3545. Total energy = 4832.0168 kcal/mol (4822.2820 without restraints) Performing minimization step: 3546. Total energy = 4830.9479 kcal/mol (4821.2149 without restraints) Performing minimization step: 3547. Total energy = 4829.8794 kcal/mol (4820.1483 without restraints) Performing minimization step: 3548. Total energy = 4828.8126 kcal/mol (4819.0833 without restraints) Performing minimization step: 3549. Total energy = 4827.7469 kcal/mol (4818.0195 without restraints) Performing minimization step: 3550. Total energy = 4826.6824 kcal/mol (4816.9569 without restraints) Performing minimization step: 3551. Total energy = 4825.6192 kcal/mol (4815.8954 without restraints) Performing minimization step: 3552. Total energy = 4824.5563 kcal/mol (4814.8344 without restraints) Performing minimization step: 3553. Total energy = 4823.4951 kcal/mol (4813.7750 without restraints) Performing minimization step: 3554. Total energy = 4822.4343 kcal/mol (4812.7160 without restraints) Performing minimization step: 3555. Total energy = 4821.3743 kcal/mol (4811.6578 without restraints) Performing minimization step: 3556. Total energy = 4820.3158 kcal/mol (4810.6012 without restraints) Performing minimization step: 3557. Total energy = 4819.2582 kcal/mol (4809.5454 without restraints) Performing minimization step: 3558. Total energy = 4818.2016 kcal/mol (4808.4906 without restraints) Performing minimization step: 3559. Total energy = 4817.1458 kcal/mol (4807.4366 without restraints) Performing minimization step: 3560. Total energy = 4816.0911 kcal/mol (4806.3838 without restraints) Performing minimization step: 3561. Total energy = 4815.0372 kcal/mol (4805.3317 without restraints) Performing minimization step: 3562. Total energy = 4813.9845 kcal/mol (4804.2808 without restraints) Performing minimization step: 3563. Total energy = 4812.9327 kcal/mol (4803.2308 without restraints) Performing minimization step: 3564. Total energy = 4811.8820 kcal/mol (4802.1819 without restraints) Performing minimization step: 3565. Total energy = 4810.8322 kcal/mol (4801.1339 without restraints) Performing minimization step: 3566. Total energy = 4809.7839 kcal/mol (4800.0875 without restraints) Performing minimization step: 3567. Total energy = 4808.7361 kcal/mol (4799.0415 without restraints) Performing minimization step: 3568. Total energy = 4807.6892 kcal/mol (4797.9964 without restraints) Performing minimization step: 3569. Total energy = 4806.6438 kcal/mol (4796.9529 without restraints) Performing minimization step: 3570. Total energy = 4805.5993 kcal/mol (4795.9101 without restraints) Performing minimization step: 3571. Total energy = 4804.5556 kcal/mol (4794.8682 without restraints) Performing minimization step: 3572. Total energy = 4803.5125 kcal/mol (4793.8270 without restraints) Performing minimization step: 3573. Total energy = 4802.4705 kcal/mol (4792.7868 without restraints) Performing minimization step: 3574. Total energy = 4801.4296 kcal/mol (4791.7477 without restraints) Performing minimization step: 3575. Total energy = 4800.3899 kcal/mol (4790.7098 without restraints) Performing minimization step: 3576. Total energy = 4799.3513 kcal/mol (4789.6732 without restraints) Performing minimization step: 3577. Total energy = 4798.3138 kcal/mol (4788.6375 without restraints) Performing minimization step: 3578. Total energy = 4797.2769 kcal/mol (4787.6023 without restraints) Performing minimization step: 3579. Total energy = 4796.2409 kcal/mol (4786.5681 without restraints) Performing minimization step: 3580. Total energy = 4795.2059 kcal/mol (4785.5349 without restraints) Performing minimization step: 3581. Total energy = 4794.1724 kcal/mol (4784.5033 without restraints) Performing minimization step: 3582. Total energy = 4793.1399 kcal/mol (4783.4725 without restraints) Performing minimization step: 3583. Total energy = 4792.1079 kcal/mol (4782.4423 without restraints) Performing minimization step: 3584. Total energy = 4791.0764 kcal/mol (4781.4127 without restraints) Performing minimization step: 3585. Total energy = 4790.0465 kcal/mol (4780.3846 without restraints) Performing minimization step: 3586. Total energy = 4789.0176 kcal/mol (4779.3574 without restraints) Performing minimization step: 3587. Total energy = 4787.9895 kcal/mol (4778.3312 without restraints) Performing minimization step: 3588. Total energy = 4786.9621 kcal/mol (4777.3055 without restraints) Performing minimization step: 3589. Total energy = 4785.9362 kcal/mol (4776.2817 without restraints) Performing minimization step: 3590. Total energy = 4784.9109 kcal/mol (4775.2580 without restraints) Performing minimization step: 3591. Total energy = 4783.8867 kcal/mol (4774.2356 without restraints) Performing minimization step: 3592. Total energy = 4782.8634 kcal/mol (4773.2141 without restraints) Performing minimization step: 3593. Total energy = 4781.8412 kcal/mol (4772.1937 without restraints) Performing minimization step: 3594. Total energy = 4780.8198 kcal/mol (4771.1741 without restraints) Performing minimization step: 3595. Total energy = 4779.7991 kcal/mol (4770.1552 without restraints) Performing minimization step: 3596. Total energy = 4778.7795 kcal/mol (4769.1374 without restraints) Performing minimization step: 3597. Total energy = 4777.7609 kcal/mol (4768.1207 without restraints) Performing minimization step: 3598. Total energy = 4776.7431 kcal/mol (4767.1046 without restraints) Performing minimization step: 3599. Total energy = 4775.7259 kcal/mol (4766.0892 without restraints) Performing minimization step: 3600. Total energy = 4774.7099 kcal/mol (4765.0750 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3601. Total energy = 4773.6950 kcal/mol (4764.0619 without restraints) Performing minimization step: 3602. Total energy = 4772.6808 kcal/mol (4763.0496 without restraints) Performing minimization step: 3603. Total energy = 4771.6679 kcal/mol (4762.0384 without restraints) Performing minimization step: 3604. Total energy = 4770.6556 kcal/mol (4761.0279 without restraints) Performing minimization step: 3605. Total energy = 4769.6440 kcal/mol (4760.0181 without restraints) Performing minimization step: 3606. Total energy = 4768.6341 kcal/mol (4759.0101 without restraints) Performing minimization step: 3607. Total energy = 4767.6246 kcal/mol (4758.0023 without restraints) Performing minimization step: 3608. Total energy = 4766.6168 kcal/mol (4756.9962 without restraints) Performing minimization step: 3609. Total energy = 4765.6093 kcal/mol (4755.9906 without restraints) Performing minimization step: 3610. Total energy = 4764.6026 kcal/mol (4754.9856 without restraints) Performing minimization step: 3611. Total energy = 4763.5970 kcal/mol (4753.9818 without restraints) Performing minimization step: 3612. Total energy = 4762.5924 kcal/mol (4752.9791 without restraints) Performing minimization step: 3613. Total energy = 4761.5885 kcal/mol (4751.9769 without restraints) Performing minimization step: 3614. Total energy = 4760.5856 kcal/mol (4750.9759 without restraints) Performing minimization step: 3615. Total energy = 4759.5836 kcal/mol (4749.9756 without restraints) Performing minimization step: 3616. Total energy = 4758.5824 kcal/mol (4748.9761 without restraints) Performing minimization step: 3617. Total energy = 4757.5825 kcal/mol (4747.9781 without restraints) Performing minimization step: 3618. Total energy = 4756.5834 kcal/mol (4746.9807 without restraints) Performing minimization step: 3619. Total energy = 4755.5849 kcal/mol (4745.9840 without restraints) Performing minimization step: 3620. Total energy = 4754.5875 kcal/mol (4744.9884 without restraints) Performing minimization step: 3621. Total energy = 4753.5912 kcal/mol (4743.9939 without restraints) Performing minimization step: 3622. Total energy = 4752.5956 kcal/mol (4743.0002 without restraints) Performing minimization step: 3623. Total energy = 4751.6009 kcal/mol (4742.0072 without restraints) Performing minimization step: 3624. Total energy = 4750.6072 kcal/mol (4741.0153 without restraints) Performing minimization step: 3625. Total energy = 4749.6144 kcal/mol (4740.0245 without restraints) Performing minimization step: 3626. Total energy = 4748.6224 kcal/mol (4739.0341 without restraints) Performing minimization step: 3627. Total energy = 4747.6311 kcal/mol (4738.0441 without restraints) Performing minimization step: 3628. Total energy = 4746.6405 kcal/mol (4737.0557 without restraints) Performing minimization step: 3629. Total energy = 4745.6511 kcal/mol (4736.0680 without restraints) Performing minimization step: 3630. Total energy = 4744.6625 kcal/mol (4735.0812 without restraints) Performing minimization step: 3631. Total energy = 4743.6746 kcal/mol (4734.0951 without restraints) Performing minimization step: 3632. Total energy = 4742.6879 kcal/mol (4733.1102 without restraints) Performing minimization step: 3633. Total energy = 4741.7019 kcal/mol (4732.1259 without restraints) Performing minimization step: 3634. Total energy = 4740.7172 kcal/mol (4731.1431 without restraints) Performing minimization step: 3635. Total energy = 4739.7335 kcal/mol (4730.1611 without restraints) Performing minimization step: 3636. Total energy = 4738.7503 kcal/mol (4729.1798 without restraints) Performing minimization step: 3637. Total energy = 4737.7682 kcal/mol (4728.1994 without restraints) Performing minimization step: 3638. Total energy = 4736.7869 kcal/mol (4727.2199 without restraints) Performing minimization step: 3639. Total energy = 4735.8064 kcal/mol (4726.2410 without restraints) Performing minimization step: 3640. Total energy = 4734.8266 kcal/mol (4725.2631 without restraints) Performing minimization step: 3641. Total energy = 4733.8479 kcal/mol (4724.2862 without restraints) Performing minimization step: 3642. Total energy = 4732.8699 kcal/mol (4723.3099 without restraints) Performing minimization step: 3643. Total energy = 4731.8930 kcal/mol (4722.3348 without restraints) Performing minimization step: 3644. Total energy = 4730.9168 kcal/mol (4721.3604 without restraints) Performing minimization step: 3645. Total energy = 4729.9419 kcal/mol (4720.3872 without restraints) Performing minimization step: 3646. Total energy = 4728.9674 kcal/mol (4719.4144 without restraints) Performing minimization step: 3647. Total energy = 4727.9940 kcal/mol (4718.4428 without restraints) Performing minimization step: 3648. Total energy = 4727.0210 kcal/mol (4717.4716 without restraints) Performing minimization step: 3649. Total energy = 4726.0492 kcal/mol (4716.5017 without restraints) Performing minimization step: 3650. Total energy = 4725.0787 kcal/mol (4715.5328 without restraints) Performing minimization step: 3651. Total energy = 4724.1085 kcal/mol (4714.5644 without restraints) Performing minimization step: 3652. Total energy = 4723.1392 kcal/mol (4713.5968 without restraints) Performing minimization step: 3653. Total energy = 4722.1708 kcal/mol (4712.6302 without restraints) Performing minimization step: 3654. Total energy = 4721.2034 kcal/mol (4711.6647 without restraints) Performing minimization step: 3655. Total energy = 4720.2371 kcal/mol (4710.6999 without restraints) Performing minimization step: 3656. Total energy = 4719.2712 kcal/mol (4709.7359 without restraints) Performing minimization step: 3657. Total energy = 4718.3062 kcal/mol (4708.7727 without restraints) Performing minimization step: 3658. Total energy = 4717.3423 kcal/mol (4707.8105 without restraints) Performing minimization step: 3659. Total energy = 4716.3790 kcal/mol (4706.8489 without restraints) Performing minimization step: 3660. Total energy = 4715.4165 kcal/mol (4705.8883 without restraints) Performing minimization step: 3661. Total energy = 4714.4550 kcal/mol (4704.9284 without restraints) Performing minimization step: 3662. Total energy = 4713.4952 kcal/mol (4703.9704 without restraints) Performing minimization step: 3663. Total energy = 4712.5352 kcal/mol (4703.0121 without restraints) Performing minimization step: 3664. Total energy = 4711.5759 kcal/mol (4702.0545 without restraints) Performing minimization step: 3665. Total energy = 4710.6177 kcal/mol (4701.0982 without restraints) Performing minimization step: 3666. Total energy = 4709.6606 kcal/mol (4700.1428 without restraints) Performing minimization step: 3667. Total energy = 4708.7047 kcal/mol (4699.1886 without restraints) Performing minimization step: 3668. Total energy = 4707.7494 kcal/mol (4698.2354 without restraints) Performing minimization step: 3669. Total energy = 4706.7948 kcal/mol (4697.2823 without restraints) Performing minimization step: 3670. Total energy = 4705.8409 kcal/mol (4696.3302 without restraints) Performing minimization step: 3671. Total energy = 4704.8878 kcal/mol (4695.3788 without restraints) Performing minimization step: 3672. Total energy = 4703.9359 kcal/mol (4694.4285 without restraints) Performing minimization step: 3673. Total energy = 4702.9849 kcal/mol (4693.4794 without restraints) Performing minimization step: 3674. Total energy = 4702.0348 kcal/mol (4692.5310 without restraints) Performing minimization step: 3675. Total energy = 4701.0849 kcal/mol (4691.5829 without restraints) Performing minimization step: 3676. Total energy = 4700.1362 kcal/mol (4690.6359 without restraints) Performing minimization step: 3677. Total energy = 4699.1880 kcal/mol (4689.6895 without restraints) Performing minimization step: 3678. Total energy = 4698.2411 kcal/mol (4688.7443 without restraints) Performing minimization step: 3679. Total energy = 4697.2946 kcal/mol (4687.7995 without restraints) Performing minimization step: 3680. Total energy = 4696.3490 kcal/mol (4686.8557 without restraints) Performing minimization step: 3681. Total energy = 4695.4045 kcal/mol (4685.9130 without restraints) Performing minimization step: 3682. Total energy = 4694.4607 kcal/mol (4684.9709 without restraints) Performing minimization step: 3683. Total energy = 4693.5175 kcal/mol (4684.0294 without restraints) Performing minimization step: 3684. Total energy = 4692.5751 kcal/mol (4683.0888 without restraints) Performing minimization step: 3685. Total energy = 4691.6341 kcal/mol (4682.1494 without restraints) Performing minimization step: 3686. Total energy = 4690.6935 kcal/mol (4681.2106 without restraints) Performing minimization step: 3687. Total energy = 4689.7536 kcal/mol (4680.2725 without restraints) Performing minimization step: 3688. Total energy = 4688.8148 kcal/mol (4679.3357 without restraints) Performing minimization step: 3689. Total energy = 4687.8766 kcal/mol (4678.3990 without restraints) Performing minimization step: 3690. Total energy = 4686.9395 kcal/mol (4677.4636 without restraints) Performing minimization step: 3691. Total energy = 4686.0030 kcal/mol (4676.5288 without restraints) Performing minimization step: 3692. Total energy = 4685.0674 kcal/mol (4675.5951 without restraints) Performing minimization step: 3693. Total energy = 4684.1327 kcal/mol (4674.6620 without restraints) Performing minimization step: 3694. Total energy = 4683.1987 kcal/mol (4673.7297 without restraints) Performing minimization step: 3695. Total energy = 4682.2653 kcal/mol (4672.7981 without restraints) Performing minimization step: 3696. Total energy = 4681.3326 kcal/mol (4671.8670 without restraints) Performing minimization step: 3697. Total energy = 4680.4010 kcal/mol (4670.9372 without restraints) Performing minimization step: 3698. Total energy = 4679.4699 kcal/mol (4670.0078 without restraints) Performing minimization step: 3699. Total energy = 4678.5399 kcal/mol (4669.0796 without restraints) Performing minimization step: 3700. Total energy = 4677.6108 kcal/mol (4668.1522 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3701. Total energy = 4676.6822 kcal/mol (4667.2253 without restraints) Performing minimization step: 3702. Total energy = 4675.7544 kcal/mol (4666.2992 without restraints) Performing minimization step: 3703. Total energy = 4674.8274 kcal/mol (4665.3739 without restraints) Performing minimization step: 3704. Total energy = 4673.9013 kcal/mol (4664.4497 without restraints) Performing minimization step: 3705. Total energy = 4672.9761 kcal/mol (4663.5263 without restraints) Performing minimization step: 3706. Total energy = 4672.0520 kcal/mol (4662.6037 without restraints) Performing minimization step: 3707. Total energy = 4671.1287 kcal/mol (4661.6824 without restraints) Performing minimization step: 3708. Total energy = 4670.2060 kcal/mol (4660.7613 without restraints) Performing minimization step: 3709. Total energy = 4669.2842 kcal/mol (4659.8410 without restraints) Performing minimization step: 3710. Total energy = 4668.3629 kcal/mol (4658.9216 without restraints) Performing minimization step: 3711. Total energy = 4667.4424 kcal/mol (4658.0027 without restraints) Performing minimization step: 3712. Total energy = 4666.5230 kcal/mol (4657.0850 without restraints) Performing minimization step: 3713. Total energy = 4665.6040 kcal/mol (4656.1677 without restraints) Performing minimization step: 3714. Total energy = 4664.6860 kcal/mol (4655.2515 without restraints) Performing minimization step: 3715. Total energy = 4663.7687 kcal/mol (4654.3359 without restraints) Performing minimization step: 3716. Total energy = 4662.8520 kcal/mol (4653.4209 without restraints) Performing minimization step: 3717. Total energy = 4661.9361 kcal/mol (4652.5068 without restraints) Performing minimization step: 3718. Total energy = 4661.0212 kcal/mol (4651.5936 without restraints) Performing minimization step: 3719. Total energy = 4660.1069 kcal/mol (4650.6809 without restraints) Performing minimization step: 3720. Total energy = 4659.1937 kcal/mol (4649.7695 without restraints) Performing minimization step: 3721. Total energy = 4658.2809 kcal/mol (4648.8584 without restraints) Performing minimization step: 3722. Total energy = 4657.3689 kcal/mol (4647.9481 without restraints) Performing minimization step: 3723. Total energy = 4656.4579 kcal/mol (4647.0390 without restraints) Performing minimization step: 3724. Total energy = 4655.5477 kcal/mol (4646.1304 without restraints) Performing minimization step: 3725. Total energy = 4654.6381 kcal/mol (4645.2224 without restraints) Performing minimization step: 3726. Total energy = 4653.7294 kcal/mol (4644.3155 without restraints) Performing minimization step: 3727. Total energy = 4652.8213 kcal/mol (4643.4092 without restraints) Performing minimization step: 3728. Total energy = 4651.9141 kcal/mol (4642.5035 without restraints) Performing minimization step: 3729. Total energy = 4651.0076 kcal/mol (4641.5989 without restraints) Performing minimization step: 3730. Total energy = 4650.1018 kcal/mol (4640.6947 without restraints) Performing minimization step: 3731. Total energy = 4649.1968 kcal/mol (4639.7913 without restraints) Performing minimization step: 3732. Total energy = 4648.2925 kcal/mol (4638.8888 without restraints) Performing minimization step: 3733. Total energy = 4647.3893 kcal/mol (4637.9873 without restraints) Performing minimization step: 3734. Total energy = 4646.4864 kcal/mol (4637.0861 without restraints) Performing minimization step: 3735. Total energy = 4645.5845 kcal/mol (4636.1859 without restraints) Performing minimization step: 3736. Total energy = 4644.6831 kcal/mol (4635.2862 without restraints) Performing minimization step: 3737. Total energy = 4643.7828 kcal/mol (4634.3876 without restraints) Performing minimization step: 3738. Total energy = 4642.8835 kcal/mol (4633.4901 without restraints) Performing minimization step: 3739. Total energy = 4641.9848 kcal/mol (4632.5931 without restraints) Performing minimization step: 3740. Total energy = 4641.0872 kcal/mol (4631.6971 without restraints) Performing minimization step: 3741. Total energy = 4640.1902 kcal/mol (4630.8018 without restraints) Performing minimization step: 3742. Total energy = 4639.2939 kcal/mol (4629.9072 without restraints) Performing minimization step: 3743. Total energy = 4638.3980 kcal/mol (4629.0130 without restraints) Performing minimization step: 3744. Total energy = 4637.5034 kcal/mol (4628.1202 without restraints) Performing minimization step: 3745. Total energy = 4636.6093 kcal/mol (4627.2277 without restraints) Performing minimization step: 3746. Total energy = 4635.7159 kcal/mol (4626.3359 without restraints) Performing minimization step: 3747. Total energy = 4634.8235 kcal/mol (4625.4454 without restraints) Performing minimization step: 3748. Total energy = 4633.9314 kcal/mol (4624.5549 without restraints) Performing minimization step: 3749. Total energy = 4633.0404 kcal/mol (4623.6655 without restraints) Performing minimization step: 3750. Total energy = 4632.1499 kcal/mol (4622.7768 without restraints) Performing minimization step: 3751. Total energy = 4631.2603 kcal/mol (4621.8889 without restraints) Performing minimization step: 3752. Total energy = 4630.3712 kcal/mol (4621.0014 without restraints) Performing minimization step: 3753. Total energy = 4629.4829 kcal/mol (4620.1149 without restraints) Performing minimization step: 3754. Total energy = 4628.5958 kcal/mol (4619.2295 without restraints) Performing minimization step: 3755. Total energy = 4627.7093 kcal/mol (4618.3448 without restraints) Performing minimization step: 3756. Total energy = 4626.8234 kcal/mol (4617.4604 without restraints) Performing minimization step: 3757. Total energy = 4625.9383 kcal/mol (4616.5769 without restraints) Performing minimization step: 3758. Total energy = 4625.0535 kcal/mol (4615.6939 without restraints) Performing minimization step: 3759. Total energy = 4624.1698 kcal/mol (4614.8119 without restraints) Performing minimization step: 3760. Total energy = 4623.2867 kcal/mol (4613.9305 without restraints) Performing minimization step: 3761. Total energy = 4622.4043 kcal/mol (4613.0496 without restraints) Performing minimization step: 3762. Total energy = 4621.5231 kcal/mol (4612.1702 without restraints) Performing minimization step: 3763. Total energy = 4620.6427 kcal/mol (4611.2916 without restraints) Performing minimization step: 3764. Total energy = 4619.7626 kcal/mol (4610.4130 without restraints) Performing minimization step: 3765. Total energy = 4618.8831 kcal/mol (4609.5353 without restraints) Performing minimization step: 3766. Total energy = 4618.0043 kcal/mol (4608.6582 without restraints) Performing minimization step: 3767. Total energy = 4617.1262 kcal/mol (4607.7818 without restraints) Performing minimization step: 3768. Total energy = 4616.2495 kcal/mol (4606.9068 without restraints) Performing minimization step: 3769. Total energy = 4615.3733 kcal/mol (4606.0323 without restraints) Performing minimization step: 3770. Total energy = 4614.4975 kcal/mol (4605.1580 without restraints) Performing minimization step: 3771. Total energy = 4613.6225 kcal/mol (4604.2847 without restraints) Performing minimization step: 3772. Total energy = 4612.7481 kcal/mol (4603.4121 without restraints) Performing minimization step: 3773. Total energy = 4611.8744 kcal/mol (4602.5400 without restraints) Performing minimization step: 3774. Total energy = 4611.0017 kcal/mol (4601.6689 without restraints) Performing minimization step: 3775. Total energy = 4610.1292 kcal/mol (4600.7982 without restraints) Performing minimization step: 3776. Total energy = 4609.2577 kcal/mol (4599.9283 without restraints) Performing minimization step: 3777. Total energy = 4608.3869 kcal/mol (4599.0592 without restraints) Performing minimization step: 3778. Total energy = 4607.5169 kcal/mol (4598.1908 without restraints) Performing minimization step: 3779. Total energy = 4606.6477 kcal/mol (4597.3233 without restraints) Performing minimization step: 3780. Total energy = 4605.7791 kcal/mol (4596.4565 without restraints) Performing minimization step: 3781. Total energy = 4604.9114 kcal/mol (4595.5903 without restraints) Performing minimization step: 3782. Total energy = 4604.0443 kcal/mol (4594.7249 without restraints) Performing minimization step: 3783. Total energy = 4603.1782 kcal/mol (4593.8605 without restraints) Performing minimization step: 3784. Total energy = 4602.3132 kcal/mol (4592.9971 without restraints) Performing minimization step: 3785. Total energy = 4601.4476 kcal/mol (4592.1333 without restraints) Performing minimization step: 3786. Total energy = 4600.5835 kcal/mol (4591.2708 without restraints) Performing minimization step: 3787. Total energy = 4599.7199 kcal/mol (4590.4089 without restraints) Performing minimization step: 3788. Total energy = 4598.8572 kcal/mol (4589.5479 without restraints) Performing minimization step: 3789. Total energy = 4597.9952 kcal/mol (4588.6875 without restraints) Performing minimization step: 3790. Total energy = 4597.1337 kcal/mol (4587.8276 without restraints) Performing minimization step: 3791. Total energy = 4596.2731 kcal/mol (4586.9687 without restraints) Performing minimization step: 3792. Total energy = 4595.4131 kcal/mol (4586.1105 without restraints) Performing minimization step: 3793. Total energy = 4594.5538 kcal/mol (4585.2528 without restraints) Performing minimization step: 3794. Total energy = 4593.6951 kcal/mol (4584.3957 without restraints) Performing minimization step: 3795. Total energy = 4592.8372 kcal/mol (4583.5395 without restraints) Performing minimization step: 3796. Total energy = 4591.9801 kcal/mol (4582.6840 without restraints) Performing minimization step: 3797. Total energy = 4591.1235 kcal/mol (4581.8291 without restraints) Performing minimization step: 3798. Total energy = 4590.2678 kcal/mol (4580.9751 without restraints) Performing minimization step: 3799. Total energy = 4589.4131 kcal/mol (4580.1222 without restraints) Performing minimization step: 3800. Total energy = 4588.5586 kcal/mol (4579.2692 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3801. Total energy = 4587.7051 kcal/mol (4578.4173 without restraints) Performing minimization step: 3802. Total energy = 4586.8520 kcal/mol (4577.5659 without restraints) Performing minimization step: 3803. Total energy = 4585.9999 kcal/mol (4576.7155 without restraints) Performing minimization step: 3804. Total energy = 4585.1486 kcal/mol (4575.8659 without restraints) Performing minimization step: 3805. Total energy = 4584.2976 kcal/mol (4575.0165 without restraints) Performing minimization step: 3806. Total energy = 4583.4476 kcal/mol (4574.1681 without restraints) Performing minimization step: 3807. Total energy = 4582.5980 kcal/mol (4573.3201 without restraints) Performing minimization step: 3808. Total energy = 4581.7491 kcal/mol (4572.4729 without restraints) Performing minimization step: 3809. Total energy = 4580.9010 kcal/mol (4571.6264 without restraints) Performing minimization step: 3810. Total energy = 4580.0535 kcal/mol (4570.7806 without restraints) Performing minimization step: 3811. Total energy = 4579.2070 kcal/mol (4569.9357 without restraints) Performing minimization step: 3812. Total energy = 4578.3609 kcal/mol (4569.0912 without restraints) Performing minimization step: 3813. Total energy = 4577.5156 kcal/mol (4568.2476 without restraints) Performing minimization step: 3814. Total energy = 4576.6711 kcal/mol (4567.4047 without restraints) Performing minimization step: 3815. Total energy = 4575.8269 kcal/mol (4566.5621 without restraints) Performing minimization step: 3816. Total energy = 4574.9834 kcal/mol (4565.7204 without restraints) Performing minimization step: 3817. Total energy = 4574.1411 kcal/mol (4564.8797 without restraints) Performing minimization step: 3818. Total energy = 4573.2993 kcal/mol (4564.0396 without restraints) Performing minimization step: 3819. Total energy = 4572.4581 kcal/mol (4563.2000 without restraints) Performing minimization step: 3820. Total energy = 4571.6179 kcal/mol (4562.3614 without restraints) Performing minimization step: 3821. Total energy = 4570.7779 kcal/mol (4561.5231 without restraints) Performing minimization step: 3822. Total energy = 4569.9387 kcal/mol (4560.6857 without restraints) Performing minimization step: 3823. Total energy = 4569.1002 kcal/mol (4559.8487 without restraints) Performing minimization step: 3824. Total energy = 4568.2623 kcal/mol (4559.0125 without restraints) Performing minimization step: 3825. Total energy = 4567.4251 kcal/mol (4558.1769 without restraints) Performing minimization step: 3826. Total energy = 4566.5887 kcal/mol (4557.3421 without restraints) Performing minimization step: 3827. Total energy = 4565.7532 kcal/mol (4556.5083 without restraints) Performing minimization step: 3828. Total energy = 4564.9184 kcal/mol (4555.6750 without restraints) Performing minimization step: 3829. Total energy = 4564.0839 kcal/mol (4554.8422 without restraints) Performing minimization step: 3830. Total energy = 4563.2500 kcal/mol (4554.0100 without restraints) Performing minimization step: 3831. Total energy = 4562.4171 kcal/mol (4553.1786 without restraints) Performing minimization step: 3832. Total energy = 4561.5846 kcal/mol (4552.3478 without restraints) Performing minimization step: 3833. Total energy = 4560.7527 kcal/mol (4551.5176 without restraints) Performing minimization step: 3834. Total energy = 4559.9217 kcal/mol (4550.6882 without restraints) Performing minimization step: 3835. Total energy = 4559.0918 kcal/mol (4549.8600 without restraints) Performing minimization step: 3836. Total energy = 4558.2628 kcal/mol (4549.0325 without restraints) Performing minimization step: 3837. Total energy = 4557.4343 kcal/mol (4548.2057 without restraints) Performing minimization step: 3838. Total energy = 4556.6064 kcal/mol (4547.3794 without restraints) Performing minimization step: 3839. Total energy = 4555.7788 kcal/mol (4546.5534 without restraints) Performing minimization step: 3840. Total energy = 4554.9518 kcal/mol (4545.7281 without restraints) Performing minimization step: 3841. Total energy = 4554.1256 kcal/mol (4544.9034 without restraints) Performing minimization step: 3842. Total energy = 4553.3001 kcal/mol (4544.0797 without restraints) Performing minimization step: 3843. Total energy = 4552.4752 kcal/mol (4543.2566 without restraints) Performing minimization step: 3844. Total energy = 4551.6513 kcal/mol (4542.4340 without restraints) Performing minimization step: 3845. Total energy = 4550.8276 kcal/mol (4541.6120 without restraints) Performing minimization step: 3846. Total energy = 4550.0043 kcal/mol (4540.7903 without restraints) Performing minimization step: 3847. Total energy = 4549.1820 kcal/mol (4539.9696 without restraints) Performing minimization step: 3848. Total energy = 4548.3604 kcal/mol (4539.1497 without restraints) Performing minimization step: 3849. Total energy = 4547.5395 kcal/mol (4538.3304 without restraints) Performing minimization step: 3850. Total energy = 4546.7192 kcal/mol (4537.5117 without restraints) Performing minimization step: 3851. Total energy = 4545.8995 kcal/mol (4536.6936 without restraints) Performing minimization step: 3852. Total energy = 4545.0808 kcal/mol (4535.8765 without restraints) Performing minimization step: 3853. Total energy = 4544.2625 kcal/mol (4535.0598 without restraints) Performing minimization step: 3854. Total energy = 4543.4444 kcal/mol (4534.2433 without restraints) Performing minimization step: 3855. Total energy = 4542.6273 kcal/mol (4533.4278 without restraints) Performing minimization step: 3856. Total energy = 4541.8107 kcal/mol (4532.6129 without restraints) Performing minimization step: 3857. Total energy = 4540.9947 kcal/mol (4531.7986 without restraints) Performing minimization step: 3858. Total energy = 4540.1793 kcal/mol (4530.9847 without restraints) Performing minimization step: 3859. Total energy = 4539.3650 kcal/mol (4530.1721 without restraints) Performing minimization step: 3860. Total energy = 4538.5514 kcal/mol (4529.3600 without restraints) Performing minimization step: 3861. Total energy = 4537.7375 kcal/mol (4528.5478 without restraints) Performing minimization step: 3862. Total energy = 4536.9255 kcal/mol (4527.7376 without restraints) Performing minimization step: 3863. Total energy = 4536.1143 kcal/mol (4526.9281 without restraints) Performing minimization step: 3864. Total energy = 4535.3034 kcal/mol (4526.1185 without restraints) Performing minimization step: 3865. Total energy = 4534.4924 kcal/mol (4525.3091 without restraints) Performing minimization step: 3866. Total energy = 4533.6827 kcal/mol (4524.5011 without restraints) Performing minimization step: 3867. Total energy = 4532.8734 kcal/mol (4523.6932 without restraints) Performing minimization step: 3868. Total energy = 4532.0644 kcal/mol (4522.8860 without restraints) Performing minimization step: 3869. Total energy = 4531.2565 kcal/mol (4522.0796 without restraints) Performing minimization step: 3870. Total energy = 4530.4492 kcal/mol (4521.2740 without restraints) Performing minimization step: 3871. Total energy = 4529.6425 kcal/mol (4520.4689 without restraints) Performing minimization step: 3872. Total energy = 4528.8365 kcal/mol (4519.6644 without restraints) Performing minimization step: 3873. Total energy = 4528.0311 kcal/mol (4518.8608 without restraints) Performing minimization step: 3874. Total energy = 4527.2263 kcal/mol (4518.0575 without restraints) Performing minimization step: 3875. Total energy = 4526.4220 kcal/mol (4517.2548 without restraints) Performing minimization step: 3876. Total energy = 4525.6182 kcal/mol (4516.4527 without restraints) Performing minimization step: 3877. Total energy = 4524.8152 kcal/mol (4515.6512 without restraints) Performing minimization step: 3878. Total energy = 4524.0133 kcal/mol (4514.8511 without restraints) Performing minimization step: 3879. Total energy = 4523.2120 kcal/mol (4514.0513 without restraints) Performing minimization step: 3880. Total energy = 4522.4109 kcal/mol (4513.2518 without restraints) Performing minimization step: 3881. Total energy = 4521.6102 kcal/mol (4512.4526 without restraints) Performing minimization step: 3882. Total energy = 4520.8107 kcal/mol (4511.6548 without restraints) Performing minimization step: 3883. Total energy = 4520.0116 kcal/mol (4510.8572 without restraints) Performing minimization step: 3884. Total energy = 4519.2135 kcal/mol (4510.0607 without restraints) Performing minimization step: 3885. Total energy = 4518.4152 kcal/mol (4509.2642 without restraints) Performing minimization step: 3886. Total energy = 4517.6184 kcal/mol (4508.4689 without restraints) Performing minimization step: 3887. Total energy = 4516.8227 kcal/mol (4507.6749 without restraints) Performing minimization step: 3888. Total energy = 4516.0269 kcal/mol (4506.8806 without restraints) Performing minimization step: 3889. Total energy = 4515.2317 kcal/mol (4506.0869 without restraints) Performing minimization step: 3890. Total energy = 4514.4369 kcal/mol (4505.2937 without restraints) Performing minimization step: 3891. Total energy = 4513.6430 kcal/mol (4504.5014 without restraints) Performing minimization step: 3892. Total energy = 4512.8497 kcal/mol (4503.7097 without restraints) Performing minimization step: 3893. Total energy = 4512.0575 kcal/mol (4502.9191 without restraints) Performing minimization step: 3894. Total energy = 4511.2653 kcal/mol (4502.1284 without restraints) Performing minimization step: 3895. Total energy = 4510.4738 kcal/mol (4501.3385 without restraints) Performing minimization step: 3896. Total energy = 4509.6832 kcal/mol (4500.5495 without restraints) Performing minimization step: 3897. Total energy = 4508.8931 kcal/mol (4499.7611 without restraints) Performing minimization step: 3898. Total energy = 4508.1038 kcal/mol (4498.9733 without restraints) Performing minimization step: 3899. Total energy = 4507.3150 kcal/mol (4498.1863 without restraints) Performing minimization step: 3900. Total energy = 4506.5267 kcal/mol (4497.3994 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 3901. Total energy = 4505.7392 kcal/mol (4496.6137 without restraints) Performing minimization step: 3902. Total energy = 4504.9520 kcal/mol (4495.8279 without restraints) Performing minimization step: 3903. Total energy = 4504.1653 kcal/mol (4495.0428 without restraints) Performing minimization step: 3904. Total energy = 4503.3794 kcal/mol (4494.2586 without restraints) Performing minimization step: 3905. Total energy = 4502.5941 kcal/mol (4493.4748 without restraints) Performing minimization step: 3906. Total energy = 4501.8097 kcal/mol (4492.6920 without restraints) Performing minimization step: 3907. Total energy = 4501.0260 kcal/mol (4491.9098 without restraints) Performing minimization step: 3908. Total energy = 4500.2426 kcal/mol (4491.1282 without restraints) Performing minimization step: 3909. Total energy = 4499.4601 kcal/mol (4490.3472 without restraints) Performing minimization step: 3910. Total energy = 4498.6779 kcal/mol (4489.5665 without restraints) Performing minimization step: 3911. Total energy = 4497.8967 kcal/mol (4488.7868 without restraints) Performing minimization step: 3912. Total energy = 4497.1160 kcal/mol (4488.0078 without restraints) Performing minimization step: 3913. Total energy = 4496.3357 kcal/mol (4487.2291 without restraints) Performing minimization step: 3914. Total energy = 4495.5559 kcal/mol (4486.4508 without restraints) Performing minimization step: 3915. Total energy = 4494.7764 kcal/mol (4485.6728 without restraints) Performing minimization step: 3916. Total energy = 4493.9979 kcal/mol (4484.8961 without restraints) Performing minimization step: 3917. Total energy = 4493.2198 kcal/mol (4484.1194 without restraints) Performing minimization step: 3918. Total energy = 4492.4426 kcal/mol (4483.3437 without restraints) Performing minimization step: 3919. Total energy = 4491.6660 kcal/mol (4482.5688 without restraints) Performing minimization step: 3920. Total energy = 4490.8898 kcal/mol (4481.7941 without restraints) Performing minimization step: 3921. Total energy = 4490.1142 kcal/mol (4481.0201 without restraints) Performing minimization step: 3922. Total energy = 4489.3391 kcal/mol (4480.2466 without restraints) Performing minimization step: 3923. Total energy = 4488.5649 kcal/mol (4479.4739 without restraints) Performing minimization step: 3924. Total energy = 4487.7913 kcal/mol (4478.7019 without restraints) Performing minimization step: 3925. Total energy = 4487.0180 kcal/mol (4477.9302 without restraints) Performing minimization step: 3926. Total energy = 4486.2456 kcal/mol (4477.1594 without restraints) Performing minimization step: 3927. Total energy = 4485.4738 kcal/mol (4476.3893 without restraints) Performing minimization step: 3928. Total energy = 4484.7025 kcal/mol (4475.6194 without restraints) Performing minimization step: 3929. Total energy = 4483.9323 kcal/mol (4474.8508 without restraints) Performing minimization step: 3930. Total energy = 4483.1621 kcal/mol (4474.0821 without restraints) Performing minimization step: 3931. Total energy = 4482.3927 kcal/mol (4473.3143 without restraints) Performing minimization step: 3932. Total energy = 4481.6239 kcal/mol (4472.5470 without restraints) Performing minimization step: 3933. Total energy = 4480.8557 kcal/mol (4471.7804 without restraints) Performing minimization step: 3934. Total energy = 4480.0881 kcal/mol (4471.0144 without restraints) Performing minimization step: 3935. Total energy = 4479.3211 kcal/mol (4470.2490 without restraints) Performing minimization step: 3936. Total energy = 4478.5549 kcal/mol (4469.4843 without restraints) Performing minimization step: 3937. Total energy = 4477.7896 kcal/mol (4468.7208 without restraints) Performing minimization step: 3938. Total energy = 4477.0246 kcal/mol (4467.9572 without restraints) Performing minimization step: 3939. Total energy = 4476.2595 kcal/mol (4467.1937 without restraints) Performing minimization step: 3940. Total energy = 4475.4950 kcal/mol (4466.4307 without restraints) Performing minimization step: 3941. Total energy = 4474.7316 kcal/mol (4465.6689 without restraints) Performing minimization step: 3942. Total energy = 4473.9693 kcal/mol (4464.9082 without restraints) Performing minimization step: 3943. Total energy = 4473.2074 kcal/mol (4464.1479 without restraints) Performing minimization step: 3944. Total energy = 4472.4460 kcal/mol (4463.3880 without restraints) Performing minimization step: 3945. Total energy = 4471.6850 kcal/mol (4462.6285 without restraints) Performing minimization step: 3946. Total energy = 4470.9248 kcal/mol (4461.8698 without restraints) Performing minimization step: 3947. Total energy = 4470.1650 kcal/mol (4461.1116 without restraints) Performing minimization step: 3948. Total energy = 4469.4059 kcal/mol (4460.3540 without restraints) Performing minimization step: 3949. Total energy = 4468.6472 kcal/mol (4459.5969 without restraints) Performing minimization step: 3950. Total energy = 4467.8890 kcal/mol (4458.8402 without restraints) Performing minimization step: 3951. Total energy = 4467.1315 kcal/mol (4458.0844 without restraints) Performing minimization step: 3952. Total energy = 4466.3743 kcal/mol (4457.3288 without restraints) Performing minimization step: 3953. Total energy = 4465.6181 kcal/mol (4456.5740 without restraints) Performing minimization step: 3954. Total energy = 4464.8624 kcal/mol (4455.8200 without restraints) Performing minimization step: 3955. Total energy = 4464.1070 kcal/mol (4455.0660 without restraints) Performing minimization step: 3956. Total energy = 4463.3524 kcal/mol (4454.3131 without restraints) Performing minimization step: 3957. Total energy = 4462.5985 kcal/mol (4453.5606 without restraints) Performing minimization step: 3958. Total energy = 4461.8452 kcal/mol (4452.8088 without restraints) Performing minimization step: 3959. Total energy = 4461.0923 kcal/mol (4452.0577 without restraints) Performing minimization step: 3960. Total energy = 4460.3403 kcal/mol (4451.3070 without restraints) Performing minimization step: 3961. Total energy = 4459.5886 kcal/mol (4450.5569 without restraints) Performing minimization step: 3962. Total energy = 4458.8375 kcal/mol (4449.8073 without restraints) Performing minimization step: 3963. Total energy = 4458.0868 kcal/mol (4449.0583 without restraints) Performing minimization step: 3964. Total energy = 4457.3369 kcal/mol (4448.3098 without restraints) Performing minimization step: 3965. Total energy = 4456.5872 kcal/mol (4447.5616 without restraints) Performing minimization step: 3966. Total energy = 4455.8384 kcal/mol (4446.8146 without restraints) Performing minimization step: 3967. Total energy = 4455.0902 kcal/mol (4446.0677 without restraints) Performing minimization step: 3968. Total energy = 4454.3425 kcal/mol (4445.3216 without restraints) Performing minimization step: 3969. Total energy = 4453.5957 kcal/mol (4444.5765 without restraints) Performing minimization step: 3970. Total energy = 4452.8493 kcal/mol (4443.8315 without restraints) Performing minimization step: 3971. Total energy = 4452.1033 kcal/mol (4443.0870 without restraints) Performing minimization step: 3972. Total energy = 4451.3580 kcal/mol (4442.3433 without restraints) Performing minimization step: 3973. Total energy = 4450.6133 kcal/mol (4441.6001 without restraints) Performing minimization step: 3974. Total energy = 4449.8689 kcal/mol (4440.8572 without restraints) Performing minimization step: 3975. Total energy = 4449.1250 kcal/mol (4440.1149 without restraints) Performing minimization step: 3976. Total energy = 4448.3820 kcal/mol (4439.3737 without restraints) Performing minimization step: 3977. Total energy = 4447.6399 kcal/mol (4438.6329 without restraints) Performing minimization step: 3978. Total energy = 4446.8977 kcal/mol (4437.8922 without restraints) Performing minimization step: 3979. Total energy = 4446.1562 kcal/mol (4437.1522 without restraints) Performing minimization step: 3980. Total energy = 4445.4155 kcal/mol (4436.4132 without restraints) Performing minimization step: 3981. Total energy = 4444.6752 kcal/mol (4435.6744 without restraints) Performing minimization step: 3982. Total energy = 4443.9354 kcal/mol (4434.9361 without restraints) Performing minimization step: 3983. Total energy = 4443.1962 kcal/mol (4434.1984 without restraints) Performing minimization step: 3984. Total energy = 4442.4575 kcal/mol (4433.4612 without restraints) Performing minimization step: 3985. Total energy = 4441.7195 kcal/mol (4432.7247 without restraints) Performing minimization step: 3986. Total energy = 4440.9819 kcal/mol (4431.9886 without restraints) Performing minimization step: 3987. Total energy = 4440.2448 kcal/mol (4431.2531 without restraints) Performing minimization step: 3988. Total energy = 4439.5087 kcal/mol (4430.5185 without restraints) Performing minimization step: 3989. Total energy = 4438.7733 kcal/mol (4429.7846 without restraints) Performing minimization step: 3990. Total energy = 4438.0380 kcal/mol (4429.0509 without restraints) Performing minimization step: 3991. Total energy = 4437.3032 kcal/mol (4428.3177 without restraints) Performing minimization step: 3992. Total energy = 4436.5692 kcal/mol (4427.5852 without restraints) Performing minimization step: 3993. Total energy = 4435.8356 kcal/mol (4426.8531 without restraints) Performing minimization step: 3994. Total energy = 4435.1029 kcal/mol (4426.1220 without restraints) Performing minimization step: 3995. Total energy = 4434.3705 kcal/mol (4425.3910 without restraints) Performing minimization step: 3996. Total energy = 4433.6386 kcal/mol (4424.6606 without restraints) Performing minimization step: 3997. Total energy = 4432.9077 kcal/mol (4423.9313 without restraints) Performing minimization step: 3998. Total energy = 4432.1773 kcal/mol (4423.2024 without restraints) Performing minimization step: 3999. Total energy = 4431.4469 kcal/mol (4422.4736 without restraints) Performing minimization step: 4000. Total energy = 4430.7172 kcal/mol (4421.7454 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4001. Total energy = 4429.9884 kcal/mol (4421.0180 without restraints) Performing minimization step: 4002. Total energy = 4429.2603 kcal/mol (4420.2915 without restraints) Performing minimization step: 4003. Total energy = 4428.5323 kcal/mol (4419.5650 without restraints) Performing minimization step: 4004. Total energy = 4427.8047 kcal/mol (4418.8389 without restraints) Performing minimization step: 4005. Total energy = 4427.0778 kcal/mol (4418.1137 without restraints) Performing minimization step: 4006. Total energy = 4426.3518 kcal/mol (4417.3890 without restraints) Performing minimization step: 4007. Total energy = 4425.6262 kcal/mol (4416.6649 without restraints) Performing minimization step: 4008. Total energy = 4424.9008 kcal/mol (4415.9410 without restraints) Performing minimization step: 4009. Total energy = 4424.1766 kcal/mol (4415.2186 without restraints) Performing minimization step: 4010. Total energy = 4423.4529 kcal/mol (4414.4962 without restraints) Performing minimization step: 4011. Total energy = 4422.7298 kcal/mol (4413.7746 without restraints) Performing minimization step: 4012. Total energy = 4422.0068 kcal/mol (4413.0533 without restraints) Performing minimization step: 4013. Total energy = 4421.2842 kcal/mol (4412.3321 without restraints) Performing minimization step: 4014. Total energy = 4420.5625 kcal/mol (4411.6119 without restraints) Performing minimization step: 4015. Total energy = 4419.8410 kcal/mol (4410.8919 without restraints) Performing minimization step: 4016. Total energy = 4419.1204 kcal/mol (4410.1728 without restraints) Performing minimization step: 4017. Total energy = 4418.4002 kcal/mol (4409.4542 without restraints) Performing minimization step: 4018. Total energy = 4417.6806 kcal/mol (4408.7360 without restraints) Performing minimization step: 4019. Total energy = 4416.9616 kcal/mol (4408.0186 without restraints) Performing minimization step: 4020. Total energy = 4416.2431 kcal/mol (4407.3017 without restraints) Performing minimization step: 4021. Total energy = 4415.5253 kcal/mol (4406.5851 without restraints) Performing minimization step: 4022. Total energy = 4414.8077 kcal/mol (4405.8691 without restraints) Performing minimization step: 4023. Total energy = 4414.0908 kcal/mol (4405.1538 without restraints) Performing minimization step: 4024. Total energy = 4413.3746 kcal/mol (4404.4390 without restraints) Performing minimization step: 4025. Total energy = 4412.6588 kcal/mol (4403.7248 without restraints) Performing minimization step: 4026. Total energy = 4411.9435 kcal/mol (4403.0110 without restraints) Performing minimization step: 4027. Total energy = 4411.2289 kcal/mol (4402.2979 without restraints) Performing minimization step: 4028. Total energy = 4410.5150 kcal/mol (4401.5855 without restraints) Performing minimization step: 4029. Total energy = 4409.8014 kcal/mol (4400.8736 without restraints) Performing minimization step: 4030. Total energy = 4409.0882 kcal/mol (4400.1617 without restraints) Performing minimization step: 4031. Total energy = 4408.3757 kcal/mol (4399.4507 without restraints) Performing minimization step: 4032. Total energy = 4407.6640 kcal/mol (4398.7406 without restraints) Performing minimization step: 4033. Total energy = 4406.9527 kcal/mol (4398.0307 without restraints) Performing minimization step: 4034. Total energy = 4406.2420 kcal/mol (4397.3216 without restraints) Performing minimization step: 4035. Total energy = 4405.5327 kcal/mol (4396.6138 without restraints) Performing minimization step: 4036. Total energy = 4404.8230 kcal/mol (4395.9055 without restraints) Performing minimization step: 4037. Total energy = 4404.1138 kcal/mol (4395.1978 without restraints) Performing minimization step: 4038. Total energy = 4403.4047 kcal/mol (4394.4903 without restraints) Performing minimization step: 4039. Total energy = 4402.6967 kcal/mol (4393.7837 without restraints) Performing minimization step: 4040. Total energy = 4401.9893 kcal/mol (4393.0778 without restraints) Performing minimization step: 4041. Total energy = 4401.2819 kcal/mol (4392.3719 without restraints) Performing minimization step: 4042. Total energy = 4400.5753 kcal/mol (4391.6669 without restraints) Performing minimization step: 4043. Total energy = 4399.8694 kcal/mol (4390.9624 without restraints) Performing minimization step: 4044. Total energy = 4399.1637 kcal/mol (4390.2582 without restraints) Performing minimization step: 4045. Total energy = 4398.4596 kcal/mol (4389.5556 without restraints) Performing minimization step: 4046. Total energy = 4397.7552 kcal/mol (4388.8527 without restraints) Performing minimization step: 4047. Total energy = 4397.0509 kcal/mol (4388.1499 without restraints) Performing minimization step: 4048. Total energy = 4396.3478 kcal/mol (4387.4483 without restraints) Performing minimization step: 4049. Total energy = 4395.6447 kcal/mol (4386.7466 without restraints) Performing minimization step: 4050. Total energy = 4394.9420 kcal/mol (4386.0454 without restraints) Performing minimization step: 4051. Total energy = 4394.2400 kcal/mol (4385.3449 without restraints) Performing minimization step: 4052. Total energy = 4393.5386 kcal/mol (4384.6451 without restraints) Performing minimization step: 4053. Total energy = 4392.8380 kcal/mol (4383.9459 without restraints) Performing minimization step: 4054. Total energy = 4392.1383 kcal/mol (4383.2477 without restraints) Performing minimization step: 4055. Total energy = 4391.4385 kcal/mol (4382.5494 without restraints) Performing minimization step: 4056. Total energy = 4390.7394 kcal/mol (4381.8518 without restraints) Performing minimization step: 4057. Total energy = 4390.0408 kcal/mol (4381.1547 without restraints) Performing minimization step: 4058. Total energy = 4389.3426 kcal/mol (4380.4580 without restraints) Performing minimization step: 4059. Total energy = 4388.6454 kcal/mol (4379.7624 without restraints) Performing minimization step: 4060. Total energy = 4387.9483 kcal/mol (4379.0665 without restraints) Performing minimization step: 4061. Total energy = 4387.2515 kcal/mol (4378.3713 without restraints) Performing minimization step: 4062. Total energy = 4386.5554 kcal/mol (4377.6767 without restraints) Performing minimization step: 4063. Total energy = 4385.8598 kcal/mol (4376.9826 without restraints) Performing minimization step: 4064. Total energy = 4385.1647 kcal/mol (4376.2890 without restraints) Performing minimization step: 4065. Total energy = 4384.4710 kcal/mol (4375.5969 without restraints) Performing minimization step: 4066. Total energy = 4383.7771 kcal/mol (4374.9042 without restraints) Performing minimization step: 4067. Total energy = 4383.0834 kcal/mol (4374.2121 without restraints) Performing minimization step: 4068. Total energy = 4382.3903 kcal/mol (4373.5205 without restraints) Performing minimization step: 4069. Total energy = 4381.6980 kcal/mol (4372.8296 without restraints) Performing minimization step: 4070. Total energy = 4381.0070 kcal/mol (4372.1402 without restraints) Performing minimization step: 4071. Total energy = 4380.3161 kcal/mol (4371.4507 without restraints) Performing minimization step: 4072. Total energy = 4379.6253 kcal/mol (4370.7614 without restraints) Performing minimization step: 4073. Total energy = 4378.9350 kcal/mol (4370.0726 without restraints) Performing minimization step: 4074. Total energy = 4378.2453 kcal/mol (4369.3843 without restraints) Performing minimization step: 4075. Total energy = 4377.5557 kcal/mol (4368.6962 without restraints) Performing minimization step: 4076. Total energy = 4376.8672 kcal/mol (4368.0092 without restraints) Performing minimization step: 4077. Total energy = 4376.1789 kcal/mol (4367.3225 without restraints) Performing minimization step: 4078. Total energy = 4375.4914 kcal/mol (4366.6363 without restraints) Performing minimization step: 4079. Total energy = 4374.8049 kcal/mol (4365.9515 without restraints) Performing minimization step: 4080. Total energy = 4374.1184 kcal/mol (4365.2663 without restraints) Performing minimization step: 4081. Total energy = 4373.4323 kcal/mol (4364.5817 without restraints) Performing minimization step: 4082. Total energy = 4372.7465 kcal/mol (4363.8974 without restraints) Performing minimization step: 4083. Total energy = 4372.0614 kcal/mol (4363.2137 without restraints) Performing minimization step: 4084. Total energy = 4371.3771 kcal/mol (4362.5310 without restraints) Performing minimization step: 4085. Total energy = 4370.6933 kcal/mol (4361.8486 without restraints) Performing minimization step: 4086. Total energy = 4370.0095 kcal/mol (4361.1663 without restraints) Performing minimization step: 4087. Total energy = 4369.3264 kcal/mol (4360.4846 without restraints) Performing minimization step: 4088. Total energy = 4368.6441 kcal/mol (4359.8037 without restraints) Performing minimization step: 4089. Total energy = 4367.9621 kcal/mol (4359.1233 without restraints) Performing minimization step: 4090. Total energy = 4367.2810 kcal/mol (4358.4435 without restraints) Performing minimization step: 4091. Total energy = 4366.6000 kcal/mol (4357.7641 without restraints) Performing minimization step: 4092. Total energy = 4365.9194 kcal/mol (4357.0849 without restraints) Performing minimization step: 4093. Total energy = 4365.2395 kcal/mol (4356.4065 without restraints) Performing minimization step: 4094. Total energy = 4364.5602 kcal/mol (4355.7287 without restraints) Performing minimization step: 4095. Total energy = 4363.8815 kcal/mol (4355.0515 without restraints) Performing minimization step: 4096. Total energy = 4363.2029 kcal/mol (4354.3743 without restraints) Performing minimization step: 4097. Total energy = 4362.5248 kcal/mol (4353.6977 without restraints) Performing minimization step: 4098. Total energy = 4361.8475 kcal/mol (4353.0218 without restraints) Performing minimization step: 4099. Total energy = 4361.1708 kcal/mol (4352.3466 without restraints) Performing minimization step: 4100. Total energy = 4360.4942 kcal/mol (4351.6713 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4101. Total energy = 4359.8184 kcal/mol (4350.9970 without restraints) Performing minimization step: 4102. Total energy = 4359.1433 kcal/mol (4350.3234 without restraints) Performing minimization step: 4103. Total energy = 4358.4685 kcal/mol (4349.6501 without restraints) Performing minimization step: 4104. Total energy = 4357.7941 kcal/mol (4348.9770 without restraints) Performing minimization step: 4105. Total energy = 4357.1201 kcal/mol (4348.3046 without restraints) Performing minimization step: 4106. Total energy = 4356.4466 kcal/mol (4347.6326 without restraints) Performing minimization step: 4107. Total energy = 4355.7736 kcal/mol (4346.9611 without restraints) Performing minimization step: 4108. Total energy = 4355.1011 kcal/mol (4346.2900 without restraints) Performing minimization step: 4109. Total energy = 4354.4294 kcal/mol (4345.6198 without restraints) Performing minimization step: 4110. Total energy = 4353.7582 kcal/mol (4344.9500 without restraints) Performing minimization step: 4111. Total energy = 4353.0873 kcal/mol (4344.2807 without restraints) Performing minimization step: 4112. Total energy = 4352.4172 kcal/mol (4343.6120 without restraints) Performing minimization step: 4113. Total energy = 4351.7473 kcal/mol (4342.9434 without restraints) Performing minimization step: 4114. Total energy = 4351.0777 kcal/mol (4342.2753 without restraints) Performing minimization step: 4115. Total energy = 4350.4087 kcal/mol (4341.6078 without restraints) Performing minimization step: 4116. Total energy = 4349.7402 kcal/mol (4340.9407 without restraints) Performing minimization step: 4117. Total energy = 4349.0723 kcal/mol (4340.2742 without restraints) Performing minimization step: 4118. Total energy = 4348.4049 kcal/mol (4339.6083 without restraints) Performing minimization step: 4119. Total energy = 4347.7379 kcal/mol (4338.9428 without restraints) Performing minimization step: 4120. Total energy = 4347.0722 kcal/mol (4338.2789 without restraints) Performing minimization step: 4121. Total energy = 4346.4066 kcal/mol (4337.6144 without restraints) Performing minimization step: 4122. Total energy = 4345.7416 kcal/mol (4336.9508 without restraints) Performing minimization step: 4123. Total energy = 4345.0768 kcal/mol (4336.2875 without restraints) Performing minimization step: 4124. Total energy = 4344.4127 kcal/mol (4335.6249 without restraints) Performing minimization step: 4125. Total energy = 4343.7489 kcal/mol (4334.9625 without restraints) Performing minimization step: 4126. Total energy = 4343.0856 kcal/mol (4334.3006 without restraints) Performing minimization step: 4127. Total energy = 4342.4228 kcal/mol (4333.6393 without restraints) Performing minimization step: 4128. Total energy = 4341.7603 kcal/mol (4332.9782 without restraints) Performing minimization step: 4129. Total energy = 4341.0988 kcal/mol (4332.3181 without restraints) Performing minimization step: 4130. Total energy = 4340.4371 kcal/mol (4331.6579 without restraints) Performing minimization step: 4131. Total energy = 4339.7761 kcal/mol (4330.9985 without restraints) Performing minimization step: 4132. Total energy = 4339.1158 kcal/mol (4330.3395 without restraints) Performing minimization step: 4133. Total energy = 4338.4558 kcal/mol (4329.6809 without restraints) Performing minimization step: 4134. Total energy = 4337.7968 kcal/mol (4329.0233 without restraints) Performing minimization step: 4135. Total energy = 4337.1372 kcal/mol (4328.3652 without restraints) Performing minimization step: 4136. Total energy = 4336.4786 kcal/mol (4327.7080 without restraints) Performing minimization step: 4137. Total energy = 4335.8201 kcal/mol (4327.0510 without restraints) Performing minimization step: 4138. Total energy = 4335.1629 kcal/mol (4326.3952 without restraints) Performing minimization step: 4139. Total energy = 4334.5058 kcal/mol (4325.7395 without restraints) Performing minimization step: 4140. Total energy = 4333.8495 kcal/mol (4325.0847 without restraints) Performing minimization step: 4141. Total energy = 4333.1938 kcal/mol (4324.4304 without restraints) Performing minimization step: 4142. Total energy = 4332.5380 kcal/mol (4323.7761 without restraints) Performing minimization step: 4143. Total energy = 4331.8829 kcal/mol (4323.1225 without restraints) Performing minimization step: 4144. Total energy = 4331.2285 kcal/mol (4322.4694 without restraints) Performing minimization step: 4145. Total energy = 4330.5740 kcal/mol (4321.8163 without restraints) Performing minimization step: 4146. Total energy = 4329.9204 kcal/mol (4321.1642 without restraints) Performing minimization step: 4147. Total energy = 4329.2671 kcal/mol (4320.5124 without restraints) Performing minimization step: 4148. Total energy = 4328.6146 kcal/mol (4319.8613 without restraints) Performing minimization step: 4149. Total energy = 4327.9624 kcal/mol (4319.2106 without restraints) Performing minimization step: 4150. Total energy = 4327.3108 kcal/mol (4318.5603 without restraints) Performing minimization step: 4151. Total energy = 4326.6599 kcal/mol (4317.9109 without restraints) Performing minimization step: 4152. Total energy = 4326.0095 kcal/mol (4317.2619 without restraints) Performing minimization step: 4153. Total energy = 4325.3589 kcal/mol (4316.6127 without restraints) Performing minimization step: 4154. Total energy = 4324.7089 kcal/mol (4315.9642 without restraints) Performing minimization step: 4155. Total energy = 4324.0599 kcal/mol (4315.3166 without restraints) Performing minimization step: 4156. Total energy = 4323.4111 kcal/mol (4314.6692 without restraints) Performing minimization step: 4157. Total energy = 4322.7627 kcal/mol (4314.0223 without restraints) Performing minimization step: 4158. Total energy = 4322.1148 kcal/mol (4313.3758 without restraints) Performing minimization step: 4159. Total energy = 4321.4678 kcal/mol (4312.7302 without restraints) Performing minimization step: 4160. Total energy = 4320.8208 kcal/mol (4312.0846 without restraints) Performing minimization step: 4161. Total energy = 4320.1745 kcal/mol (4311.4398 without restraints) Performing minimization step: 4162. Total energy = 4319.5285 kcal/mol (4310.7952 without restraints) Performing minimization step: 4163. Total energy = 4318.8830 kcal/mol (4310.1512 without restraints) Performing minimization step: 4164. Total energy = 4318.2380 kcal/mol (4309.5077 without restraints) Performing minimization step: 4165. Total energy = 4317.5937 kcal/mol (4308.8647 without restraints) Performing minimization step: 4166. Total energy = 4316.9497 kcal/mol (4308.2222 without restraints) Performing minimization step: 4167. Total energy = 4316.3063 kcal/mol (4307.5801 without restraints) Performing minimization step: 4168. Total energy = 4315.6636 kcal/mol (4306.9388 without restraints) Performing minimization step: 4169. Total energy = 4315.0210 kcal/mol (4306.2977 without restraints) Performing minimization step: 4170. Total energy = 4314.3790 kcal/mol (4305.6571 without restraints) Performing minimization step: 4171. Total energy = 4313.7376 kcal/mol (4305.0171 without restraints) Performing minimization step: 4172. Total energy = 4313.0971 kcal/mol (4304.3781 without restraints) Performing minimization step: 4173. Total energy = 4312.4564 kcal/mol (4303.7387 without restraints) Performing minimization step: 4174. Total energy = 4311.8162 kcal/mol (4303.0999 without restraints) Performing minimization step: 4175. Total energy = 4311.1763 kcal/mol (4302.4615 without restraints) Performing minimization step: 4176. Total energy = 4310.5369 kcal/mol (4301.8234 without restraints) Performing minimization step: 4177. Total energy = 4309.8985 kcal/mol (4301.1865 without restraints) Performing minimization step: 4178. Total energy = 4309.2603 kcal/mol (4300.5497 without restraints) Performing minimization step: 4179. Total energy = 4308.6226 kcal/mol (4299.9134 without restraints) Performing minimization step: 4180. Total energy = 4307.9852 kcal/mol (4299.2775 without restraints) Performing minimization step: 4181. Total energy = 4307.3487 kcal/mol (4298.6423 without restraints) Performing minimization step: 4182. Total energy = 4306.7122 kcal/mol (4298.0072 without restraints) Performing minimization step: 4183. Total energy = 4306.0763 kcal/mol (4297.3729 without restraints) Performing minimization step: 4184. Total energy = 4305.4408 kcal/mol (4296.7387 without restraints) Performing minimization step: 4185. Total energy = 4304.8057 kcal/mol (4296.1052 without restraints) Performing minimization step: 4186. Total energy = 4304.1712 kcal/mol (4295.4719 without restraints) Performing minimization step: 4187. Total energy = 4303.5373 kcal/mol (4294.8394 without restraints) Performing minimization step: 4188. Total energy = 4302.9037 kcal/mol (4294.2073 without restraints) Performing minimization step: 4189. Total energy = 4302.2707 kcal/mol (4293.5757 without restraints) Performing minimization step: 4190. Total energy = 4301.6379 kcal/mol (4292.9442 without restraints) Performing minimization step: 4191. Total energy = 4301.0058 kcal/mol (4292.3137 without restraints) Performing minimization step: 4192. Total energy = 4300.3747 kcal/mol (4291.6839 without restraints) Performing minimization step: 4193. Total energy = 4299.7433 kcal/mol (4291.0539 without restraints) Performing minimization step: 4194. Total energy = 4299.1123 kcal/mol (4290.4243 without restraints) Performing minimization step: 4195. Total energy = 4298.4824 kcal/mol (4289.7959 without restraints) Performing minimization step: 4196. Total energy = 4297.8528 kcal/mol (4289.1677 without restraints) Performing minimization step: 4197. Total energy = 4297.2233 kcal/mol (4288.5395 without restraints) Performing minimization step: 4198. Total energy = 4296.5944 kcal/mol (4287.9120 without restraints) Performing minimization step: 4199. Total energy = 4295.9656 kcal/mol (4287.2847 without restraints) Performing minimization step: 4200. Total energy = 4295.3374 kcal/mol (4286.6579 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4201. Total energy = 4294.7100 kcal/mol (4286.0318 without restraints) Performing minimization step: 4202. Total energy = 4294.0827 kcal/mol (4285.4060 without restraints) Performing minimization step: 4203. Total energy = 4293.4559 kcal/mol (4284.7806 without restraints) Performing minimization step: 4204. Total energy = 4292.8296 kcal/mol (4284.1557 without restraints) Performing minimization step: 4205. Total energy = 4292.2039 kcal/mol (4283.5314 without restraints) Performing minimization step: 4206. Total energy = 4291.5788 kcal/mol (4282.9076 without restraints) Performing minimization step: 4207. Total energy = 4290.9544 kcal/mol (4282.2847 without restraints) Performing minimization step: 4208. Total energy = 4290.3299 kcal/mol (4281.6616 without restraints) Performing minimization step: 4209. Total energy = 4289.7062 kcal/mol (4281.0394 without restraints) Performing minimization step: 4210. Total energy = 4289.0832 kcal/mol (4280.4176 without restraints) Performing minimization step: 4211. Total energy = 4288.4599 kcal/mol (4279.7958 without restraints) Performing minimization step: 4212. Total energy = 4287.8375 kcal/mol (4279.1748 without restraints) Performing minimization step: 4213. Total energy = 4287.2154 kcal/mol (4278.5540 without restraints) Performing minimization step: 4214. Total energy = 4286.5936 kcal/mol (4277.9337 without restraints) Performing minimization step: 4215. Total energy = 4285.9724 kcal/mol (4277.3138 without restraints) Performing minimization step: 4216. Total energy = 4285.3514 kcal/mol (4276.6942 without restraints) Performing minimization step: 4217. Total energy = 4284.7310 kcal/mol (4276.0753 without restraints) Performing minimization step: 4218. Total energy = 4284.1116 kcal/mol (4275.4573 without restraints) Performing minimization step: 4219. Total energy = 4283.4925 kcal/mol (4274.8395 without restraints) Performing minimization step: 4220. Total energy = 4282.8736 kcal/mol (4274.2221 without restraints) Performing minimization step: 4221. Total energy = 4282.2554 kcal/mol (4273.6052 without restraints) Performing minimization step: 4222. Total energy = 4281.6371 kcal/mol (4272.9884 without restraints) Performing minimization step: 4223. Total energy = 4281.0195 kcal/mol (4272.3721 without restraints) Performing minimization step: 4224. Total energy = 4280.4034 kcal/mol (4271.7574 without restraints) Performing minimization step: 4225. Total energy = 4279.7866 kcal/mol (4271.1419 without restraints) Performing minimization step: 4226. Total energy = 4279.1703 kcal/mol (4270.5271 without restraints) Performing minimization step: 4227. Total energy = 4278.5545 kcal/mol (4269.9127 without restraints) Performing minimization step: 4228. Total energy = 4277.9394 kcal/mol (4269.2989 without restraints) Performing minimization step: 4229. Total energy = 4277.3241 kcal/mol (4268.6850 without restraints) Performing minimization step: 4230. Total energy = 4276.7097 kcal/mol (4268.0721 without restraints) Performing minimization step: 4231. Total energy = 4276.0957 kcal/mol (4267.4594 without restraints) Performing minimization step: 4232. Total energy = 4275.4822 kcal/mol (4266.8473 without restraints) Performing minimization step: 4233. Total energy = 4274.8696 kcal/mol (4266.2361 without restraints) Performing minimization step: 4234. Total energy = 4274.2571 kcal/mol (4265.6249 without restraints) Performing minimization step: 4235. Total energy = 4273.6448 kcal/mol (4265.0141 without restraints) Performing minimization step: 4236. Total energy = 4273.0330 kcal/mol (4264.4037 without restraints) Performing minimization step: 4237. Total energy = 4272.4217 kcal/mol (4263.7937 without restraints) Performing minimization step: 4238. Total energy = 4271.8111 kcal/mol (4263.1845 without restraints) Performing minimization step: 4239. Total energy = 4271.2010 kcal/mol (4262.5758 without restraints) Performing minimization step: 4240. Total energy = 4270.5911 kcal/mol (4261.9673 without restraints) Performing minimization step: 4241. Total energy = 4269.9816 kcal/mol (4261.3592 without restraints) Performing minimization step: 4242. Total energy = 4269.3729 kcal/mol (4260.7518 without restraints) Performing minimization step: 4243. Total energy = 4268.7643 kcal/mol (4260.1448 without restraints) Performing minimization step: 4244. Total energy = 4268.1562 kcal/mol (4259.5380 without restraints) Performing minimization step: 4245. Total energy = 4267.5490 kcal/mol (4258.9320 without restraints) Performing minimization step: 4246. Total energy = 4266.9416 kcal/mol (4258.3261 without restraints) Performing minimization step: 4247. Total energy = 4266.3352 kcal/mol (4257.7212 without restraints) Performing minimization step: 4248. Total energy = 4265.7294 kcal/mol (4257.1166 without restraints) Performing minimization step: 4249. Total energy = 4265.1234 kcal/mol (4256.5120 without restraints) Performing minimization step: 4250. Total energy = 4264.5181 kcal/mol (4255.9081 without restraints) Performing minimization step: 4251. Total energy = 4263.9134 kcal/mol (4255.3047 without restraints) Performing minimization step: 4252. Total energy = 4263.3088 kcal/mol (4254.7016 without restraints) Performing minimization step: 4253. Total energy = 4262.7049 kcal/mol (4254.0991 without restraints) Performing minimization step: 4254. Total energy = 4262.1014 kcal/mol (4253.4969 without restraints) Performing minimization step: 4255. Total energy = 4261.4980 kcal/mol (4252.8948 without restraints) Performing minimization step: 4256. Total energy = 4260.8949 kcal/mol (4252.2932 without restraints) Performing minimization step: 4257. Total energy = 4260.2926 kcal/mol (4251.6924 without restraints) Performing minimization step: 4258. Total energy = 4259.6911 kcal/mol (4251.0922 without restraints) Performing minimization step: 4259. Total energy = 4259.0898 kcal/mol (4250.4922 without restraints) Performing minimization step: 4260. Total energy = 4258.4887 kcal/mol (4249.8925 without restraints) Performing minimization step: 4261. Total energy = 4257.8883 kcal/mol (4249.2935 without restraints) Performing minimization step: 4262. Total energy = 4257.2881 kcal/mol (4248.6947 without restraints) Performing minimization step: 4263. Total energy = 4256.6883 kcal/mol (4248.0963 without restraints) Performing minimization step: 4264. Total energy = 4256.0890 kcal/mol (4247.4983 without restraints) Performing minimization step: 4265. Total energy = 4255.4907 kcal/mol (4246.9013 without restraints) Performing minimization step: 4266. Total energy = 4254.8927 kcal/mol (4246.3047 without restraints) Performing minimization step: 4267. Total energy = 4254.2949 kcal/mol (4245.7083 without restraints) Performing minimization step: 4268. Total energy = 4253.6973 kcal/mol (4245.1121 without restraints) Performing minimization step: 4269. Total energy = 4253.1005 kcal/mol (4244.5166 without restraints) Performing minimization step: 4270. Total energy = 4252.5040 kcal/mol (4243.9216 without restraints) Performing minimization step: 4271. Total energy = 4251.9078 kcal/mol (4243.3267 without restraints) Performing minimization step: 4272. Total energy = 4251.3121 kcal/mol (4242.7326 without restraints) Performing minimization step: 4273. Total energy = 4250.7169 kcal/mol (4242.1385 without restraints) Performing minimization step: 4274. Total energy = 4250.1221 kcal/mol (4241.5450 without restraints) Performing minimization step: 4275. Total energy = 4249.5273 kcal/mol (4240.9517 without restraints) Performing minimization step: 4276. Total energy = 4248.9333 kcal/mol (4240.3590 without restraints) Performing minimization step: 4277. Total energy = 4248.3398 kcal/mol (4239.7669 without restraints) Performing minimization step: 4278. Total energy = 4247.7470 kcal/mol (4239.1754 without restraints) Performing minimization step: 4279. Total energy = 4247.1546 kcal/mol (4238.5845 without restraints) Performing minimization step: 4280. Total energy = 4246.5622 kcal/mol (4237.9934 without restraints) Performing minimization step: 4281. Total energy = 4245.9703 kcal/mol (4237.4029 without restraints) Performing minimization step: 4282. Total energy = 4245.3789 kcal/mol (4236.8128 without restraints) Performing minimization step: 4283. Total energy = 4244.7883 kcal/mol (4236.2236 without restraints) Performing minimization step: 4284. Total energy = 4244.1978 kcal/mol (4235.6344 without restraints) Performing minimization step: 4285. Total energy = 4243.6077 kcal/mol (4235.0457 without restraints) Performing minimization step: 4286. Total energy = 4243.0185 kcal/mol (4234.4579 without restraints) Performing minimization step: 4287. Total energy = 4242.4295 kcal/mol (4233.8702 without restraints) Performing minimization step: 4288. Total energy = 4241.8411 kcal/mol (4233.2831 without restraints) Performing minimization step: 4289. Total energy = 4241.2529 kcal/mol (4232.6963 without restraints) Performing minimization step: 4290. Total energy = 4240.6648 kcal/mol (4232.1096 without restraints) Performing minimization step: 4291. Total energy = 4240.0773 kcal/mol (4231.5235 without restraints) Performing minimization step: 4292. Total energy = 4239.4906 kcal/mol (4230.9381 without restraints) Performing minimization step: 4293. Total energy = 4238.9046 kcal/mol (4230.3534 without restraints) Performing minimization step: 4294. Total energy = 4238.3185 kcal/mol (4229.7687 without restraints) Performing minimization step: 4295. Total energy = 4237.7328 kcal/mol (4229.1844 without restraints) Performing minimization step: 4296. Total energy = 4237.1476 kcal/mol (4228.6005 without restraints) Performing minimization step: 4297. Total energy = 4236.5628 kcal/mol (4228.0171 without restraints) Performing minimization step: 4298. Total energy = 4235.9783 kcal/mol (4227.4341 without restraints) Performing minimization step: 4299. Total energy = 4235.3944 kcal/mol (4226.8514 without restraints) Performing minimization step: 4300. Total energy = 4234.8107 kcal/mol (4226.2690 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4301. Total energy = 4234.2274 kcal/mol (4225.6873 without restraints) Performing minimization step: 4302. Total energy = 4233.6455 kcal/mol (4225.1066 without restraints) Performing minimization step: 4303. Total energy = 4233.0633 kcal/mol (4224.5257 without restraints) Performing minimization step: 4304. Total energy = 4232.4815 kcal/mol (4223.9452 without restraints) Performing minimization step: 4305. Total energy = 4231.9001 kcal/mol (4223.3652 without restraints) Performing minimization step: 4306. Total energy = 4231.3192 kcal/mol (4222.7856 without restraints) Performing minimization step: 4307. Total energy = 4230.7382 kcal/mol (4222.2060 without restraints) Performing minimization step: 4308. Total energy = 4230.1580 kcal/mol (4221.6271 without restraints) Performing minimization step: 4309. Total energy = 4229.5782 kcal/mol (4221.0487 without restraints) Performing minimization step: 4310. Total energy = 4228.9988 kcal/mol (4220.4706 without restraints) Performing minimization step: 4311. Total energy = 4228.4195 kcal/mol (4219.8927 without restraints) Performing minimization step: 4312. Total energy = 4227.8408 kcal/mol (4219.3154 without restraints) Performing minimization step: 4313. Total energy = 4227.2627 kcal/mol (4218.7386 without restraints) Performing minimization step: 4314. Total energy = 4226.6851 kcal/mol (4218.1623 without restraints) Performing minimization step: 4315. Total energy = 4226.1078 kcal/mol (4217.5864 without restraints) Performing minimization step: 4316. Total energy = 4225.5308 kcal/mol (4217.0107 without restraints) Performing minimization step: 4317. Total energy = 4224.9542 kcal/mol (4216.4354 without restraints) Performing minimization step: 4318. Total energy = 4224.3782 kcal/mol (4215.8608 without restraints) Performing minimization step: 4319. Total energy = 4223.8029 kcal/mol (4215.2871 without restraints) Performing minimization step: 4320. Total energy = 4223.2279 kcal/mol (4214.7131 without restraints) Performing minimization step: 4321. Total energy = 4222.6532 kcal/mol (4214.1399 without restraints) Performing minimization step: 4322. Total energy = 4222.0788 kcal/mol (4213.5667 without restraints) Performing minimization step: 4323. Total energy = 4221.5052 kcal/mol (4212.9946 without restraints) Performing minimization step: 4324. Total energy = 4220.9321 kcal/mol (4212.4230 without restraints) Performing minimization step: 4325. Total energy = 4220.3596 kcal/mol (4211.8517 without restraints) Performing minimization step: 4326. Total energy = 4219.7873 kcal/mol (4211.2809 without restraints) Performing minimization step: 4327. Total energy = 4219.2151 kcal/mol (4210.7098 without restraints) Performing minimization step: 4328. Total energy = 4218.6432 kcal/mol (4210.1392 without restraints) Performing minimization step: 4329. Total energy = 4218.0719 kcal/mol (4209.5694 without restraints) Performing minimization step: 4330. Total energy = 4217.5009 kcal/mol (4208.9997 without restraints) Performing minimization step: 4331. Total energy = 4216.9304 kcal/mol (4208.4306 without restraints) Performing minimization step: 4332. Total energy = 4216.3601 kcal/mol (4207.8615 without restraints) Performing minimization step: 4333. Total energy = 4215.7902 kcal/mol (4207.2931 without restraints) Performing minimization step: 4334. Total energy = 4215.2211 kcal/mol (4206.7251 without restraints) Performing minimization step: 4335. Total energy = 4214.6522 kcal/mol (4206.1579 without restraints) Performing minimization step: 4336. Total energy = 4214.0839 kcal/mol (4205.5908 without restraints) Performing minimization step: 4337. Total energy = 4213.5156 kcal/mol (4205.0237 without restraints) Performing minimization step: 4338. Total energy = 4212.9478 kcal/mol (4204.4572 without restraints) Performing minimization step: 4339. Total energy = 4212.3803 kcal/mol (4203.8911 without restraints) Performing minimization step: 4340. Total energy = 4211.8132 kcal/mol (4203.3254 without restraints) Performing minimization step: 4341. Total energy = 4211.2471 kcal/mol (4202.7605 without restraints) Performing minimization step: 4342. Total energy = 4210.6805 kcal/mol (4202.1953 without restraints) Performing minimization step: 4343. Total energy = 4210.1147 kcal/mol (4201.6309 without restraints) Performing minimization step: 4344. Total energy = 4209.5494 kcal/mol (4201.0669 without restraints) Performing minimization step: 4345. Total energy = 4208.9848 kcal/mol (4200.5037 without restraints) Performing minimization step: 4346. Total energy = 4208.4211 kcal/mol (4199.9412 without restraints) Performing minimization step: 4347. Total energy = 4207.8575 kcal/mol (4199.3789 without restraints) Performing minimization step: 4348. Total energy = 4207.2939 kcal/mol (4198.8167 without restraints) Performing minimization step: 4349. Total energy = 4206.7304 kcal/mol (4198.2545 without restraints) Performing minimization step: 4350. Total energy = 4206.1676 kcal/mol (4197.6931 without restraints) Performing minimization step: 4351. Total energy = 4205.6052 kcal/mol (4197.1321 without restraints) Performing minimization step: 4352. Total energy = 4205.0432 kcal/mol (4196.5711 without restraints) Performing minimization step: 4353. Total energy = 4204.4814 kcal/mol (4196.0108 without restraints) Performing minimization step: 4354. Total energy = 4203.9208 kcal/mol (4195.4516 without restraints) Performing minimization step: 4355. Total energy = 4203.3602 kcal/mol (4194.8922 without restraints) Performing minimization step: 4356. Total energy = 4202.7997 kcal/mol (4194.3331 without restraints) Performing minimization step: 4357. Total energy = 4202.2397 kcal/mol (4193.7744 without restraints) Performing minimization step: 4358. Total energy = 4201.6800 kcal/mol (4193.2161 without restraints) Performing minimization step: 4359. Total energy = 4201.1216 kcal/mol (4192.6590 without restraints) Performing minimization step: 4360. Total energy = 4200.5631 kcal/mol (4192.1018 without restraints) Performing minimization step: 4361. Total energy = 4200.0047 kcal/mol (4191.5448 without restraints) Performing minimization step: 4362. Total energy = 4199.4465 kcal/mol (4190.9878 without restraints) Performing minimization step: 4363. Total energy = 4198.8891 kcal/mol (4190.4318 without restraints) Performing minimization step: 4364. Total energy = 4198.3323 kcal/mol (4189.8763 without restraints) Performing minimization step: 4365. Total energy = 4197.7752 kcal/mol (4189.3205 without restraints) Performing minimization step: 4366. Total energy = 4197.2193 kcal/mol (4188.7661 without restraints) Performing minimization step: 4367. Total energy = 4196.6635 kcal/mol (4188.2116 without restraints) Performing minimization step: 4368. Total energy = 4196.1086 kcal/mol (4187.6579 without restraints) Performing minimization step: 4369. Total energy = 4195.5536 kcal/mol (4187.1042 without restraints) Performing minimization step: 4370. Total energy = 4194.9990 kcal/mol (4186.5509 without restraints) Performing minimization step: 4371. Total energy = 4194.4452 kcal/mol (4185.9985 without restraints) Performing minimization step: 4372. Total energy = 4193.8914 kcal/mol (4185.4460 without restraints) Performing minimization step: 4373. Total energy = 4193.3381 kcal/mol (4184.8940 without restraints) Performing minimization step: 4374. Total energy = 4192.7851 kcal/mol (4184.3423 without restraints) Performing minimization step: 4375. Total energy = 4192.2324 kcal/mol (4183.7907 without restraints) Performing minimization step: 4376. Total energy = 4191.6803 kcal/mol (4183.2402 without restraints) Performing minimization step: 4377. Total energy = 4191.1283 kcal/mol (4182.6895 without restraints) Performing minimization step: 4378. Total energy = 4190.5773 kcal/mol (4182.1399 without restraints) Performing minimization step: 4379. Total energy = 4190.0261 kcal/mol (4181.5900 without restraints) Performing minimization step: 4380. Total energy = 4189.4754 kcal/mol (4181.0405 without restraints) Performing minimization step: 4381. Total energy = 4188.9250 kcal/mol (4180.4914 without restraints) Performing minimization step: 4382. Total energy = 4188.3755 kcal/mol (4179.9433 without restraints) Performing minimization step: 4383. Total energy = 4187.8263 kcal/mol (4179.3957 without restraints) Performing minimization step: 4384. Total energy = 4187.2777 kcal/mol (4178.8481 without restraints) Performing minimization step: 4385. Total energy = 4186.7293 kcal/mol (4178.3010 without restraints) Performing minimization step: 4386. Total energy = 4186.1810 kcal/mol (4177.7540 without restraints) Performing minimization step: 4387. Total energy = 4185.6332 kcal/mol (4177.2075 without restraints) Performing minimization step: 4388. Total energy = 4185.0857 kcal/mol (4176.6613 without restraints) Performing minimization step: 4389. Total energy = 4184.5384 kcal/mol (4176.1154 without restraints) Performing minimization step: 4390. Total energy = 4183.9918 kcal/mol (4175.5703 without restraints) Performing minimization step: 4391. Total energy = 4183.4464 kcal/mol (4175.0258 without restraints) Performing minimization step: 4392. Total energy = 4182.9003 kcal/mol (4174.4812 without restraints) Performing minimization step: 4393. Total energy = 4182.3546 kcal/mol (4173.9369 without restraints) Performing minimization step: 4394. Total energy = 4181.8097 kcal/mol (4173.3932 without restraints) Performing minimization step: 4395. Total energy = 4181.2656 kcal/mol (4172.8505 without restraints) Performing minimization step: 4396. Total energy = 4180.7218 kcal/mol (4172.3081 without restraints) Performing minimization step: 4397. Total energy = 4180.1781 kcal/mol (4171.7656 without restraints) Performing minimization step: 4398. Total energy = 4179.6343 kcal/mol (4171.2231 without restraints) Performing minimization step: 4399. Total energy = 4179.0915 kcal/mol (4170.6816 without restraints) Performing minimization step: 4400. Total energy = 4178.5492 kcal/mol (4170.1407 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4401. Total energy = 4178.0074 kcal/mol (4169.6003 without restraints) Performing minimization step: 4402. Total energy = 4177.4654 kcal/mol (4169.0593 without restraints) Performing minimization step: 4403. Total energy = 4176.9237 kcal/mol (4168.5192 without restraints) Performing minimization step: 4404. Total energy = 4176.3826 kcal/mol (4167.9793 without restraints) Performing minimization step: 4405. Total energy = 4175.8420 kcal/mol (4167.4402 without restraints) Performing minimization step: 4406. Total energy = 4175.3018 kcal/mol (4166.9010 without restraints) Performing minimization step: 4407. Total energy = 4174.7615 kcal/mol (4166.3621 without restraints) Performing minimization step: 4408. Total energy = 4174.2216 kcal/mol (4165.8235 without restraints) Performing minimization step: 4409. Total energy = 4173.6823 kcal/mol (4165.2855 without restraints) Performing minimization step: 4410. Total energy = 4173.1438 kcal/mol (4164.7482 without restraints) Performing minimization step: 4411. Total energy = 4172.6051 kcal/mol (4164.2108 without restraints) Performing minimization step: 4412. Total energy = 4172.0674 kcal/mol (4163.6745 without restraints) Performing minimization step: 4413. Total energy = 4171.5298 kcal/mol (4163.1382 without restraints) Performing minimization step: 4414. Total energy = 4170.9924 kcal/mol (4162.6021 without restraints) Performing minimization step: 4415. Total energy = 4170.4558 kcal/mol (4162.0669 without restraints) Performing minimization step: 4416. Total energy = 4169.9196 kcal/mol (4161.5320 without restraints) Performing minimization step: 4417. Total energy = 4169.3842 kcal/mol (4160.9978 without restraints) Performing minimization step: 4418. Total energy = 4168.8484 kcal/mol (4160.4633 without restraints) Performing minimization step: 4419. Total energy = 4168.3131 kcal/mol (4159.9294 without restraints) Performing minimization step: 4420. Total energy = 4167.7784 kcal/mol (4159.3959 without restraints) Performing minimization step: 4421. Total energy = 4167.2437 kcal/mol (4158.8624 without restraints) Performing minimization step: 4422. Total energy = 4166.7095 kcal/mol (4158.3297 without restraints) Performing minimization step: 4423. Total energy = 4166.1757 kcal/mol (4157.7971 without restraints) Performing minimization step: 4424. Total energy = 4165.6427 kcal/mol (4157.2654 without restraints) Performing minimization step: 4425. Total energy = 4165.1096 kcal/mol (4156.7336 without restraints) Performing minimization step: 4426. Total energy = 4164.5774 kcal/mol (4156.2027 without restraints) Performing minimization step: 4427. Total energy = 4164.0451 kcal/mol (4155.6717 without restraints) Performing minimization step: 4428. Total energy = 4163.5134 kcal/mol (4155.1413 without restraints) Performing minimization step: 4429. Total energy = 4162.9821 kcal/mol (4154.6113 without restraints) Performing minimization step: 4430. Total energy = 4162.4509 kcal/mol (4154.0814 without restraints) Performing minimization step: 4431. Total energy = 4161.9205 kcal/mol (4153.5522 without restraints) Performing minimization step: 4432. Total energy = 4161.3904 kcal/mol (4153.0235 without restraints) Performing minimization step: 4433. Total energy = 4160.8604 kcal/mol (4152.4948 without restraints) Performing minimization step: 4434. Total energy = 4160.3309 kcal/mol (4151.9666 without restraints) Performing minimization step: 4435. Total energy = 4159.8021 kcal/mol (4151.4390 without restraints) Performing minimization step: 4436. Total energy = 4159.2732 kcal/mol (4150.9115 without restraints) Performing minimization step: 4437. Total energy = 4158.7446 kcal/mol (4150.3842 without restraints) Performing minimization step: 4438. Total energy = 4158.2167 kcal/mol (4149.8575 without restraints) Performing minimization step: 4439. Total energy = 4157.6890 kcal/mol (4149.3311 without restraints) Performing minimization step: 4440. Total energy = 4157.1618 kcal/mol (4148.8053 without restraints) Performing minimization step: 4441. Total energy = 4156.6348 kcal/mol (4148.2796 without restraints) Performing minimization step: 4442. Total energy = 4156.1083 kcal/mol (4147.7543 without restraints) Performing minimization step: 4443. Total energy = 4155.5827 kcal/mol (4147.2300 without restraints) Performing minimization step: 4444. Total energy = 4155.0572 kcal/mol (4146.7058 without restraints) Performing minimization step: 4445. Total energy = 4154.5323 kcal/mol (4146.1823 without restraints) Performing minimization step: 4446. Total energy = 4154.0074 kcal/mol (4145.6586 without restraints) Performing minimization step: 4447. Total energy = 4153.4830 kcal/mol (4145.1355 without restraints) Performing minimization step: 4448. Total energy = 4152.9590 kcal/mol (4144.6127 without restraints) Performing minimization step: 4449. Total energy = 4152.4353 kcal/mol (4144.0903 without restraints) Performing minimization step: 4450. Total energy = 4151.9114 kcal/mol (4143.5677 without restraints) Performing minimization step: 4451. Total energy = 4151.3884 kcal/mol (4143.0460 without restraints) Performing minimization step: 4452. Total energy = 4150.8659 kcal/mol (4142.5248 without restraints) Performing minimization step: 4453. Total energy = 4150.3440 kcal/mol (4142.0042 without restraints) Performing minimization step: 4454. Total energy = 4149.8224 kcal/mol (4141.4839 without restraints) Performing minimization step: 4455. Total energy = 4149.3007 kcal/mol (4140.9634 without restraints) Performing minimization step: 4456. Total energy = 4148.7804 kcal/mol (4140.4445 without restraints) Performing minimization step: 4457. Total energy = 4148.2597 kcal/mol (4139.9251 without restraints) Performing minimization step: 4458. Total energy = 4147.7392 kcal/mol (4139.4059 without restraints) Performing minimization step: 4459. Total energy = 4147.2193 kcal/mol (4138.8873 without restraints) Performing minimization step: 4460. Total energy = 4146.6997 kcal/mol (4138.3689 without restraints) Performing minimization step: 4461. Total energy = 4146.1802 kcal/mol (4137.8507 without restraints) Performing minimization step: 4462. Total energy = 4145.6613 kcal/mol (4137.3330 without restraints) Performing minimization step: 4463. Total energy = 4145.1427 kcal/mol (4136.8157 without restraints) Performing minimization step: 4464. Total energy = 4144.6244 kcal/mol (4136.2987 without restraints) Performing minimization step: 4465. Total energy = 4144.1073 kcal/mol (4135.7829 without restraints) Performing minimization step: 4466. Total energy = 4143.5899 kcal/mol (4135.2669 without restraints) Performing minimization step: 4467. Total energy = 4143.0730 kcal/mol (4134.7514 without restraints) Performing minimization step: 4468. Total energy = 4142.5565 kcal/mol (4134.2360 without restraints) Performing minimization step: 4469. Total energy = 4142.0404 kcal/mol (4133.7211 without restraints) Performing minimization step: 4470. Total energy = 4141.5248 kcal/mol (4133.2069 without restraints) Performing minimization step: 4471. Total energy = 4141.0096 kcal/mol (4132.6930 without restraints) Performing minimization step: 4472. Total energy = 4140.4944 kcal/mol (4132.1790 without restraints) Performing minimization step: 4473. Total energy = 4139.9795 kcal/mol (4131.6653 without restraints) Performing minimization step: 4474. Total energy = 4139.4656 kcal/mol (4131.1527 without restraints) Performing minimization step: 4475. Total energy = 4138.9521 kcal/mol (4130.6407 without restraints) Performing minimization step: 4476. Total energy = 4138.4388 kcal/mol (4130.1285 without restraints) Performing minimization step: 4477. Total energy = 4137.9256 kcal/mol (4129.6166 without restraints) Performing minimization step: 4478. Total energy = 4137.4125 kcal/mol (4129.1047 without restraints) Performing minimization step: 4479. Total energy = 4136.8996 kcal/mol (4128.5932 without restraints) Performing minimization step: 4480. Total energy = 4136.3874 kcal/mol (4128.0824 without restraints) Performing minimization step: 4481. Total energy = 4135.8762 kcal/mol (4127.5724 without restraints) Performing minimization step: 4482. Total energy = 4135.3649 kcal/mol (4127.0623 without restraints) Performing minimization step: 4483. Total energy = 4134.8539 kcal/mol (4126.5526 without restraints) Performing minimization step: 4484. Total energy = 4134.3434 kcal/mol (4126.0433 without restraints) Performing minimization step: 4485. Total energy = 4133.8334 kcal/mol (4125.5346 without restraints) Performing minimization step: 4486. Total energy = 4133.3230 kcal/mol (4125.0255 without restraints) Performing minimization step: 4487. Total energy = 4132.8131 kcal/mol (4124.5168 without restraints) Performing minimization step: 4488. Total energy = 4132.3039 kcal/mol (4124.0089 without restraints) Performing minimization step: 4489. Total energy = 4131.7951 kcal/mol (4123.5014 without restraints) Performing minimization step: 4490. Total energy = 4131.2865 kcal/mol (4122.9940 without restraints) Performing minimization step: 4491. Total energy = 4130.7783 kcal/mol (4122.4872 without restraints) Performing minimization step: 4492. Total energy = 4130.2707 kcal/mol (4121.9808 without restraints) Performing minimization step: 4493. Total energy = 4129.7632 kcal/mol (4121.4745 without restraints) Performing minimization step: 4494. Total energy = 4129.2569 kcal/mol (4120.9696 without restraints) Performing minimization step: 4495. Total energy = 4128.7502 kcal/mol (4120.4640 without restraints) Performing minimization step: 4496. Total energy = 4128.2437 kcal/mol (4119.9589 without restraints) Performing minimization step: 4497. Total energy = 4127.7377 kcal/mol (4119.4544 without restraints) Performing minimization step: 4498. Total energy = 4127.2326 kcal/mol (4118.9503 without restraints) Performing minimization step: 4499. Total energy = 4126.7276 kcal/mol (4118.4466 without restraints) Performing minimization step: 4500. Total energy = 4126.2227 kcal/mol (4117.9430 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4501. Total energy = 4125.7183 kcal/mol (4117.4399 without restraints) Performing minimization step: 4502. Total energy = 4125.2143 kcal/mol (4116.9371 without restraints) Performing minimization step: 4503. Total energy = 4124.7111 kcal/mol (4116.4352 without restraints) Performing minimization step: 4504. Total energy = 4124.2076 kcal/mol (4115.9330 without restraints) Performing minimization step: 4505. Total energy = 4123.7044 kcal/mol (4115.4311 without restraints) Performing minimization step: 4506. Total energy = 4123.2019 kcal/mol (4114.9298 without restraints) Performing minimization step: 4507. Total energy = 4122.6994 kcal/mol (4114.4286 without restraints) Performing minimization step: 4508. Total energy = 4122.1980 kcal/mol (4113.9284 without restraints) Performing minimization step: 4509. Total energy = 4121.6963 kcal/mol (4113.4280 without restraints) Performing minimization step: 4510. Total energy = 4121.1949 kcal/mol (4112.9279 without restraints) Performing minimization step: 4511. Total energy = 4120.6941 kcal/mol (4112.4284 without restraints) Performing minimization step: 4512. Total energy = 4120.1938 kcal/mol (4111.9293 without restraints) Performing minimization step: 4513. Total energy = 4119.6936 kcal/mol (4111.4304 without restraints) Performing minimization step: 4514. Total energy = 4119.1938 kcal/mol (4110.9318 without restraints) Performing minimization step: 4515. Total energy = 4118.6944 kcal/mol (4110.4335 without restraints) Performing minimization step: 4516. Total energy = 4118.1951 kcal/mol (4109.9359 without restraints) Performing minimization step: 4517. Total energy = 4117.6963 kcal/mol (4109.4381 without restraints) Performing minimization step: 4518. Total energy = 4117.1987 kcal/mol (4108.9419 without restraints) Performing minimization step: 4519. Total energy = 4116.7011 kcal/mol (4108.4455 without restraints) Performing minimization step: 4520. Total energy = 4116.2032 kcal/mol (4107.9488 without restraints) Performing minimization step: 4521. Total energy = 4115.7062 kcal/mol (4107.4531 without restraints) Performing minimization step: 4522. Total energy = 4115.2096 kcal/mol (4106.9577 without restraints) Performing minimization step: 4523. Total energy = 4114.7129 kcal/mol (4106.4623 without restraints) Performing minimization step: 4524. Total energy = 4114.2171 kcal/mol (4105.9679 without restraints) Performing minimization step: 4525. Total energy = 4113.7215 kcal/mol (4105.4734 without restraints) Performing minimization step: 4526. Total energy = 4113.2260 kcal/mol (4104.9791 without restraints) Performing minimization step: 4527. Total energy = 4112.7308 kcal/mol (4104.4853 without restraints) Performing minimization step: 4528. Total energy = 4112.2363 kcal/mol (4103.9920 without restraints) Performing minimization step: 4529. Total energy = 4111.7420 kcal/mol (4103.4990 without restraints) Performing minimization step: 4530. Total energy = 4111.2477 kcal/mol (4103.0060 without restraints) Performing minimization step: 4531. Total energy = 4110.7538 kcal/mol (4102.5133 without restraints) Performing minimization step: 4532. Total energy = 4110.2606 kcal/mol (4102.0214 without restraints) Performing minimization step: 4533. Total energy = 4109.7682 kcal/mol (4101.5302 without restraints) Performing minimization step: 4534. Total energy = 4109.2760 kcal/mol (4101.0393 without restraints) Performing minimization step: 4535. Total energy = 4108.7837 kcal/mol (4100.5483 without restraints) Performing minimization step: 4536. Total energy = 4108.2921 kcal/mol (4100.0579 without restraints) Performing minimization step: 4537. Total energy = 4107.8007 kcal/mol (4099.5678 without restraints) Performing minimization step: 4538. Total energy = 4107.3090 kcal/mol (4099.0773 without restraints) Performing minimization step: 4539. Total energy = 4106.8183 kcal/mol (4098.5879 without restraints) Performing minimization step: 4540. Total energy = 4106.3280 kcal/mol (4098.0989 without restraints) Performing minimization step: 4541. Total energy = 4105.8381 kcal/mol (4097.6101 without restraints) Performing minimization step: 4542. Total energy = 4105.3486 kcal/mol (4097.1219 without restraints) Performing minimization step: 4543. Total energy = 4104.8601 kcal/mol (4096.6350 without restraints) Performing minimization step: 4544. Total energy = 4104.3713 kcal/mol (4096.1471 without restraints) Performing minimization step: 4545. Total energy = 4103.8824 kcal/mol (4095.6594 without restraints) Performing minimization step: 4546. Total energy = 4103.3935 kcal/mol (4095.1719 without restraints) Performing minimization step: 4547. Total energy = 4102.9055 kcal/mol (4094.6851 without restraints) Performing minimization step: 4548. Total energy = 4102.4181 kcal/mol (4094.1989 without restraints) Performing minimization step: 4549. Total energy = 4101.9309 kcal/mol (4093.7130 without restraints) Performing minimization step: 4550. Total energy = 4101.4439 kcal/mol (4093.2274 without restraints) Performing minimization step: 4551. Total energy = 4100.9573 kcal/mol (4092.7419 without restraints) Performing minimization step: 4552. Total energy = 4100.4708 kcal/mol (4092.2566 without restraints) Performing minimization step: 4553. Total energy = 4099.9847 kcal/mol (4091.7719 without restraints) Performing minimization step: 4554. Total energy = 4099.4993 kcal/mol (4091.2877 without restraints) Performing minimization step: 4555. Total energy = 4099.0142 kcal/mol (4090.8039 without restraints) Performing minimization step: 4556. Total energy = 4098.5296 kcal/mol (4090.3206 without restraints) Performing minimization step: 4557. Total energy = 4098.0451 kcal/mol (4089.8372 without restraints) Performing minimization step: 4558. Total energy = 4097.5613 kcal/mol (4089.3548 without restraints) Performing minimization step: 4559. Total energy = 4097.0778 kcal/mol (4088.8725 without restraints) Performing minimization step: 4560. Total energy = 4096.5944 kcal/mol (4088.3904 without restraints) Performing minimization step: 4561. Total energy = 4096.1115 kcal/mol (4087.9087 without restraints) Performing minimization step: 4562. Total energy = 4095.6293 kcal/mol (4087.4277 without restraints) Performing minimization step: 4563. Total energy = 4095.1470 kcal/mol (4086.9466 without restraints) Performing minimization step: 4564. Total energy = 4094.6648 kcal/mol (4086.4657 without restraints) Performing minimization step: 4565. Total energy = 4094.1828 kcal/mol (4085.9849 without restraints) Performing minimization step: 4566. Total energy = 4093.7013 kcal/mol (4085.5047 without restraints) Performing minimization step: 4567. Total energy = 4093.2205 kcal/mol (4085.0251 without restraints) Performing minimization step: 4568. Total energy = 4092.7401 kcal/mol (4084.5459 without restraints) Performing minimization step: 4569. Total energy = 4092.2597 kcal/mol (4084.0667 without restraints) Performing minimization step: 4570. Total energy = 4091.7798 kcal/mol (4083.5882 without restraints) Performing minimization step: 4571. Total energy = 4091.3005 kcal/mol (4083.1101 without restraints) Performing minimization step: 4572. Total energy = 4090.8216 kcal/mol (4082.6325 without restraints) Performing minimization step: 4573. Total energy = 4090.3428 kcal/mol (4082.1549 without restraints) Performing minimization step: 4574. Total energy = 4089.8640 kcal/mol (4081.6773 without restraints) Performing minimization step: 4575. Total energy = 4089.3859 kcal/mol (4081.2005 without restraints) Performing minimization step: 4576. Total energy = 4088.9079 kcal/mol (4080.7238 without restraints) Performing minimization step: 4577. Total energy = 4088.4305 kcal/mol (4080.2475 without restraints) Performing minimization step: 4578. Total energy = 4087.9536 kcal/mol (4079.7719 without restraints) Performing minimization step: 4579. Total energy = 4087.4767 kcal/mol (4079.2963 without restraints) Performing minimization step: 4580. Total energy = 4087.0006 kcal/mol (4078.8215 without restraints) Performing minimization step: 4581. Total energy = 4086.5249 kcal/mol (4078.3469 without restraints) Performing minimization step: 4582. Total energy = 4086.0489 kcal/mol (4077.8722 without restraints) Performing minimization step: 4583. Total energy = 4085.5737 kcal/mol (4077.3982 without restraints) Performing minimization step: 4584. Total energy = 4085.0980 kcal/mol (4076.9238 without restraints) Performing minimization step: 4585. Total energy = 4084.6233 kcal/mol (4076.4504 without restraints) Performing minimization step: 4586. Total energy = 4084.1491 kcal/mol (4075.9775 without restraints) Performing minimization step: 4587. Total energy = 4083.6757 kcal/mol (4075.5052 without restraints) Performing minimization step: 4588. Total energy = 4083.2018 kcal/mol (4075.0326 without restraints) Performing minimization step: 4589. Total energy = 4082.7285 kcal/mol (4074.5604 without restraints) Performing minimization step: 4590. Total energy = 4082.2555 kcal/mol (4074.0888 without restraints) Performing minimization step: 4591. Total energy = 4081.7831 kcal/mol (4073.6176 without restraints) Performing minimization step: 4592. Total energy = 4081.3106 kcal/mol (4073.1463 without restraints) Performing minimization step: 4593. Total energy = 4080.8390 kcal/mol (4072.6759 without restraints) Performing minimization step: 4594. Total energy = 4080.3671 kcal/mol (4072.2053 without restraints) Performing minimization step: 4595. Total energy = 4079.8960 kcal/mol (4071.7354 without restraints) Performing minimization step: 4596. Total energy = 4079.4252 kcal/mol (4071.2660 without restraints) Performing minimization step: 4597. Total energy = 4078.9551 kcal/mol (4070.7971 without restraints) Performing minimization step: 4598. Total energy = 4078.4845 kcal/mol (4070.3277 without restraints) Performing minimization step: 4599. Total energy = 4078.0143 kcal/mol (4069.8587 without restraints) Performing minimization step: 4600. Total energy = 4077.5443 kcal/mol (4069.3900 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4601. Total energy = 4077.0751 kcal/mol (4068.9220 without restraints) Performing minimization step: 4602. Total energy = 4076.6062 kcal/mol (4068.4543 without restraints) Performing minimization step: 4603. Total energy = 4076.1374 kcal/mol (4067.9867 without restraints) Performing minimization step: 4604. Total energy = 4075.6689 kcal/mol (4067.5195 without restraints) Performing minimization step: 4605. Total energy = 4075.2010 kcal/mol (4067.0530 without restraints) Performing minimization step: 4606. Total energy = 4074.7334 kcal/mol (4066.5865 without restraints) Performing minimization step: 4607. Total energy = 4074.2657 kcal/mol (4066.1199 without restraints) Performing minimization step: 4608. Total energy = 4073.7986 kcal/mol (4065.6542 without restraints) Performing minimization step: 4609. Total energy = 4073.3325 kcal/mol (4065.1892 without restraints) Performing minimization step: 4610. Total energy = 4072.8665 kcal/mol (4064.7247 without restraints) Performing minimization step: 4611. Total energy = 4072.4007 kcal/mol (4064.2599 without restraints) Performing minimization step: 4612. Total energy = 4071.9353 kcal/mol (4063.7960 without restraints) Performing minimization step: 4613. Total energy = 4071.4701 kcal/mol (4063.3318 without restraints) Performing minimization step: 4614. Total energy = 4071.0055 kcal/mol (4062.8684 without restraints) Performing minimization step: 4615. Total energy = 4070.5405 kcal/mol (4062.4046 without restraints) Performing minimization step: 4616. Total energy = 4070.0764 kcal/mol (4061.9417 without restraints) Performing minimization step: 4617. Total energy = 4069.6123 kcal/mol (4061.4789 without restraints) Performing minimization step: 4618. Total energy = 4069.1481 kcal/mol (4061.0160 without restraints) Performing minimization step: 4619. Total energy = 4068.6848 kcal/mol (4060.5539 without restraints) Performing minimization step: 4620. Total energy = 4068.2219 kcal/mol (4060.0923 without restraints) Performing minimization step: 4621. Total energy = 4067.7599 kcal/mol (4059.6318 without restraints) Performing minimization step: 4622. Total energy = 4067.2979 kcal/mol (4059.1708 without restraints) Performing minimization step: 4623. Total energy = 4066.8359 kcal/mol (4058.7100 without restraints) Performing minimization step: 4624. Total energy = 4066.3742 kcal/mol (4058.2495 without restraints) Performing minimization step: 4625. Total energy = 4065.9127 kcal/mol (4057.7892 without restraints) Performing minimization step: 4626. Total energy = 4065.4517 kcal/mol (4057.3295 without restraints) Performing minimization step: 4627. Total energy = 4064.9911 kcal/mol (4056.8701 without restraints) Performing minimization step: 4628. Total energy = 4064.5313 kcal/mol (4056.4115 without restraints) Performing minimization step: 4629. Total energy = 4064.0712 kcal/mol (4055.9526 without restraints) Performing minimization step: 4630. Total energy = 4063.6114 kcal/mol (4055.4940 without restraints) Performing minimization step: 4631. Total energy = 4063.1522 kcal/mol (4055.0361 without restraints) Performing minimization step: 4632. Total energy = 4062.6935 kcal/mol (4054.5787 without restraints) Performing minimization step: 4633. Total energy = 4062.2351 kcal/mol (4054.1214 without restraints) Performing minimization step: 4634. Total energy = 4061.7767 kcal/mol (4053.6642 without restraints) Performing minimization step: 4635. Total energy = 4061.3187 kcal/mol (4053.2076 without restraints) Performing minimization step: 4636. Total energy = 4060.8612 kcal/mol (4052.7513 without restraints) Performing minimization step: 4637. Total energy = 4060.4038 kcal/mol (4052.2950 without restraints) Performing minimization step: 4638. Total energy = 4059.9466 kcal/mol (4051.8391 without restraints) Performing minimization step: 4639. Total energy = 4059.4900 kcal/mol (4051.3838 without restraints) Performing minimization step: 4640. Total energy = 4059.0336 kcal/mol (4050.9286 without restraints) Performing minimization step: 4641. Total energy = 4058.5780 kcal/mol (4050.4743 without restraints) Performing minimization step: 4642. Total energy = 4058.1225 kcal/mol (4050.0200 without restraints) Performing minimization step: 4643. Total energy = 4057.6671 kcal/mol (4049.5657 without restraints) Performing minimization step: 4644. Total energy = 4057.2125 kcal/mol (4049.1125 without restraints) Performing minimization step: 4645. Total energy = 4056.7582 kcal/mol (4048.6593 without restraints) Performing minimization step: 4646. Total energy = 4056.3041 kcal/mol (4048.2064 without restraints) Performing minimization step: 4647. Total energy = 4055.8501 kcal/mol (4047.7538 without restraints) Performing minimization step: 4648. Total energy = 4055.3971 kcal/mol (4047.3019 without restraints) Performing minimization step: 4649. Total energy = 4054.9438 kcal/mol (4046.8498 without restraints) Performing minimization step: 4650. Total energy = 4054.4906 kcal/mol (4046.3978 without restraints) Performing minimization step: 4651. Total energy = 4054.0379 kcal/mol (4045.9463 without restraints) Performing minimization step: 4652. Total energy = 4053.5854 kcal/mol (4045.4951 without restraints) Performing minimization step: 4653. Total energy = 4053.1334 kcal/mol (4045.0442 without restraints) Performing minimization step: 4654. Total energy = 4052.6817 kcal/mol (4044.5939 without restraints) Performing minimization step: 4655. Total energy = 4052.2303 kcal/mol (4044.1436 without restraints) Performing minimization step: 4656. Total energy = 4051.7794 kcal/mol (4043.6941 without restraints) Performing minimization step: 4657. Total energy = 4051.3288 kcal/mol (4043.2446 without restraints) Performing minimization step: 4658. Total energy = 4050.8787 kcal/mol (4042.7957 without restraints) Performing minimization step: 4659. Total energy = 4050.4287 kcal/mol (4042.3470 without restraints) Performing minimization step: 4660. Total energy = 4049.9791 kcal/mol (4041.8986 without restraints) Performing minimization step: 4661. Total energy = 4049.5297 kcal/mol (4041.4504 without restraints) Performing minimization step: 4662. Total energy = 4049.0804 kcal/mol (4041.0023 without restraints) Performing minimization step: 4663. Total energy = 4048.6320 kcal/mol (4040.5552 without restraints) Performing minimization step: 4664. Total energy = 4048.1837 kcal/mol (4040.1080 without restraints) Performing minimization step: 4665. Total energy = 4047.7358 kcal/mol (4039.6615 without restraints) Performing minimization step: 4666. Total energy = 4047.2882 kcal/mol (4039.2150 without restraints) Performing minimization step: 4667. Total energy = 4046.8405 kcal/mol (4038.7685 without restraints) Performing minimization step: 4668. Total energy = 4046.3932 kcal/mol (4038.3224 without restraints) Performing minimization step: 4669. Total energy = 4045.9459 kcal/mol (4037.8764 without restraints) Performing minimization step: 4670. Total energy = 4045.4994 kcal/mol (4037.4311 without restraints) Performing minimization step: 4671. Total energy = 4045.0535 kcal/mol (4036.9863 without restraints) Performing minimization step: 4672. Total energy = 4044.6077 kcal/mol (4036.5418 without restraints) Performing minimization step: 4673. Total energy = 4044.1621 kcal/mol (4036.0975 without restraints) Performing minimization step: 4674. Total energy = 4043.7175 kcal/mol (4035.6540 without restraints) Performing minimization step: 4675. Total energy = 4043.2724 kcal/mol (4035.2101 without restraints) Performing minimization step: 4676. Total energy = 4042.8281 kcal/mol (4034.7671 without restraints) Performing minimization step: 4677. Total energy = 4042.3838 kcal/mol (4034.3240 without restraints) Performing minimization step: 4678. Total energy = 4041.9401 kcal/mol (4033.8815 without restraints) Performing minimization step: 4679. Total energy = 4041.4961 kcal/mol (4033.4387 without restraints) Performing minimization step: 4680. Total energy = 4041.0525 kcal/mol (4032.9964 without restraints) Performing minimization step: 4681. Total energy = 4040.6097 kcal/mol (4032.5548 without restraints) Performing minimization step: 4682. Total energy = 4040.1670 kcal/mol (4032.1133 without restraints) Performing minimization step: 4683. Total energy = 4039.7247 kcal/mol (4031.6722 without restraints) Performing minimization step: 4684. Total energy = 4039.2826 kcal/mol (4031.2315 without restraints) Performing minimization step: 4685. Total energy = 4038.8409 kcal/mol (4030.7909 without restraints) Performing minimization step: 4686. Total energy = 4038.3992 kcal/mol (4030.3504 without restraints) Performing minimization step: 4687. Total energy = 4037.9584 kcal/mol (4029.9107 without restraints) Performing minimization step: 4688. Total energy = 4037.5178 kcal/mol (4029.4714 without restraints) Performing minimization step: 4689. Total energy = 4037.0770 kcal/mol (4029.0318 without restraints) Performing minimization step: 4690. Total energy = 4036.6367 kcal/mol (4028.5929 without restraints) Performing minimization step: 4691. Total energy = 4036.1971 kcal/mol (4028.1543 without restraints) Performing minimization step: 4692. Total energy = 4035.7574 kcal/mol (4027.7156 without restraints) Performing minimization step: 4693. Total energy = 4035.3184 kcal/mol (4027.2783 without restraints) Performing minimization step: 4694. Total energy = 4034.8793 kcal/mol (4026.8402 without restraints) Performing minimization step: 4695. Total energy = 4034.4404 kcal/mol (4026.4024 without restraints) Performing minimization step: 4696. Total energy = 4034.0021 kcal/mol (4025.9655 without restraints) Performing minimization step: 4697. Total energy = 4033.5645 kcal/mol (4025.5289 without restraints) Performing minimization step: 4698. Total energy = 4033.1269 kcal/mol (4025.0928 without restraints) Performing minimization step: 4699. Total energy = 4032.6895 kcal/mol (4024.6565 without restraints) Performing minimization step: 4700. Total energy = 4032.2529 kcal/mol (4024.2210 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4701. Total energy = 4031.8161 kcal/mol (4023.7855 without restraints) Performing minimization step: 4702. Total energy = 4031.3799 kcal/mol (4023.3506 without restraints) Performing minimization step: 4703. Total energy = 4030.9439 kcal/mol (4022.9158 without restraints) Performing minimization step: 4704. Total energy = 4030.5082 kcal/mol (4022.4813 without restraints) Performing minimization step: 4705. Total energy = 4030.0727 kcal/mol (4022.0469 without restraints) Performing minimization step: 4706. Total energy = 4029.6374 kcal/mol (4021.6128 without restraints) Performing minimization step: 4707. Total energy = 4029.2023 kcal/mol (4021.1790 without restraints) Performing minimization step: 4708. Total energy = 4028.7678 kcal/mol (4020.7457 without restraints) Performing minimization step: 4709. Total energy = 4028.3336 kcal/mol (4020.3127 without restraints) Performing minimization step: 4710. Total energy = 4027.8995 kcal/mol (4019.8797 without restraints) Performing minimization step: 4711. Total energy = 4027.4661 kcal/mol (4019.4476 without restraints) Performing minimization step: 4712. Total energy = 4027.0329 kcal/mol (4019.0156 without restraints) Performing minimization step: 4713. Total energy = 4026.6010 kcal/mol (4018.5852 without restraints) Performing minimization step: 4714. Total energy = 4026.1689 kcal/mol (4018.1541 without restraints) Performing minimization step: 4715. Total energy = 4025.7369 kcal/mol (4017.7233 without restraints) Performing minimization step: 4716. Total energy = 4025.3050 kcal/mol (4017.2926 without restraints) Performing minimization step: 4717. Total energy = 4024.8731 kcal/mol (4016.8618 without restraints) Performing minimization step: 4718. Total energy = 4024.4416 kcal/mol (4016.4314 without restraints) Performing minimization step: 4719. Total energy = 4024.0104 kcal/mol (4016.0016 without restraints) Performing minimization step: 4720. Total energy = 4023.5797 kcal/mol (4015.5722 without restraints) Performing minimization step: 4721. Total energy = 4023.1493 kcal/mol (4015.1430 without restraints) Performing minimization step: 4722. Total energy = 4022.7190 kcal/mol (4014.7139 without restraints) Performing minimization step: 4723. Total energy = 4022.2896 kcal/mol (4014.2857 without restraints) Performing minimization step: 4724. Total energy = 4021.8598 kcal/mol (4013.8571 without restraints) Performing minimization step: 4725. Total energy = 4021.4315 kcal/mol (4013.4301 without restraints) Performing minimization step: 4726. Total energy = 4021.0026 kcal/mol (4013.0023 without restraints) Performing minimization step: 4727. Total energy = 4020.5740 kcal/mol (4012.5750 without restraints) Performing minimization step: 4728. Total energy = 4020.1462 kcal/mol (4012.1484 without restraints) Performing minimization step: 4729. Total energy = 4019.7185 kcal/mol (4011.7218 without restraints) Performing minimization step: 4730. Total energy = 4019.2912 kcal/mol (4011.2957 without restraints) Performing minimization step: 4731. Total energy = 4018.8635 kcal/mol (4010.8692 without restraints) Performing minimization step: 4732. Total energy = 4018.4363 kcal/mol (4010.4432 without restraints) Performing minimization step: 4733. Total energy = 4018.0098 kcal/mol (4010.0179 without restraints) Performing minimization step: 4734. Total energy = 4017.5833 kcal/mol (4009.5926 without restraints) Performing minimization step: 4735. Total energy = 4017.1574 kcal/mol (4009.1680 without restraints) Performing minimization step: 4736. Total energy = 4016.7316 kcal/mol (4008.7434 without restraints) Performing minimization step: 4737. Total energy = 4016.3062 kcal/mol (4008.3192 without restraints) Performing minimization step: 4738. Total energy = 4015.8807 kcal/mol (4007.8950 without restraints) Performing minimization step: 4739. Total energy = 4015.4560 kcal/mol (4007.4714 without restraints) Performing minimization step: 4740. Total energy = 4015.0313 kcal/mol (4007.0479 without restraints) Performing minimization step: 4741. Total energy = 4014.6070 kcal/mol (4006.6248 without restraints) Performing minimization step: 4742. Total energy = 4014.1832 kcal/mol (4006.2022 without restraints) Performing minimization step: 4743. Total energy = 4013.7595 kcal/mol (4005.7797 without restraints) Performing minimization step: 4744. Total energy = 4013.3362 kcal/mol (4005.3576 without restraints) Performing minimization step: 4745. Total energy = 4012.9135 kcal/mol (4004.9362 without restraints) Performing minimization step: 4746. Total energy = 4012.4907 kcal/mol (4004.5146 without restraints) Performing minimization step: 4747. Total energy = 4012.0681 kcal/mol (4004.0932 without restraints) Performing minimization step: 4748. Total energy = 4011.6459 kcal/mol (4003.6721 without restraints) Performing minimization step: 4749. Total energy = 4011.2238 kcal/mol (4003.2514 without restraints) Performing minimization step: 4750. Total energy = 4010.8027 kcal/mol (4002.8315 without restraints) Performing minimization step: 4751. Total energy = 4010.3814 kcal/mol (4002.4113 without restraints) Performing minimization step: 4752. Total energy = 4009.9608 kcal/mol (4001.9918 without restraints) Performing minimization step: 4753. Total energy = 4009.5400 kcal/mol (4001.5723 without restraints) Performing minimization step: 4754. Total energy = 4009.1198 kcal/mol (4001.1533 without restraints) Performing minimization step: 4755. Total energy = 4008.7002 kcal/mol (4000.7348 without restraints) Performing minimization step: 4756. Total energy = 4008.2802 kcal/mol (4000.3161 without restraints) Performing minimization step: 4757. Total energy = 4007.8612 kcal/mol (3999.8983 without restraints) Performing minimization step: 4758. Total energy = 4007.4420 kcal/mol (3999.4803 without restraints) Performing minimization step: 4759. Total energy = 4007.0229 kcal/mol (3999.0624 without restraints) Performing minimization step: 4760. Total energy = 4006.6040 kcal/mol (3998.6448 without restraints) Performing minimization step: 4761. Total energy = 4006.1860 kcal/mol (3998.2279 without restraints) Performing minimization step: 4762. Total energy = 4005.7680 kcal/mol (3997.8111 without restraints) Performing minimization step: 4763. Total energy = 4005.3503 kcal/mol (3997.3946 without restraints) Performing minimization step: 4764. Total energy = 4004.9328 kcal/mol (3996.9783 without restraints) Performing minimization step: 4765. Total energy = 4004.5157 kcal/mol (3996.5624 without restraints) Performing minimization step: 4766. Total energy = 4004.0990 kcal/mol (3996.1470 without restraints) Performing minimization step: 4767. Total energy = 4003.6822 kcal/mol (3995.7313 without restraints) Performing minimization step: 4768. Total energy = 4003.2664 kcal/mol (3995.3166 without restraints) Performing minimization step: 4769. Total energy = 4002.8505 kcal/mol (3994.9020 without restraints) Performing minimization step: 4770. Total energy = 4002.4353 kcal/mol (3994.4880 without restraints) Performing minimization step: 4771. Total energy = 4002.0198 kcal/mol (3994.0737 without restraints) Performing minimization step: 4772. Total energy = 4001.6048 kcal/mol (3993.6599 without restraints) Performing minimization step: 4773. Total energy = 4001.1900 kcal/mol (3993.2465 without restraints) Performing minimization step: 4774. Total energy = 4000.7759 kcal/mol (3992.8336 without restraints) Performing minimization step: 4775. Total energy = 4000.3621 kcal/mol (3992.4208 without restraints) Performing minimization step: 4776. Total energy = 3999.9484 kcal/mol (3992.0083 without restraints) Performing minimization step: 4777. Total energy = 3999.5346 kcal/mol (3991.5958 without restraints) Performing minimization step: 4778. Total energy = 3999.1215 kcal/mol (3991.1839 without restraints) Performing minimization step: 4779. Total energy = 3998.7087 kcal/mol (3990.7723 without restraints) Performing minimization step: 4780. Total energy = 3998.2964 kcal/mol (3990.3611 without restraints) Performing minimization step: 4781. Total energy = 3997.8838 kcal/mol (3989.9498 without restraints) Performing minimization step: 4782. Total energy = 3997.4718 kcal/mol (3989.5390 without restraints) Performing minimization step: 4783. Total energy = 3997.0603 kcal/mol (3989.1286 without restraints) Performing minimization step: 4784. Total energy = 3996.6489 kcal/mol (3988.7185 without restraints) Performing minimization step: 4785. Total energy = 3996.2378 kcal/mol (3988.3086 without restraints) Performing minimization step: 4786. Total energy = 3995.8272 kcal/mol (3987.8991 without restraints) Performing minimization step: 4787. Total energy = 3995.4164 kcal/mol (3987.4896 without restraints) Performing minimization step: 4788. Total energy = 3995.0061 kcal/mol (3987.0805 without restraints) Performing minimization step: 4789. Total energy = 3994.5961 kcal/mol (3986.6717 without restraints) Performing minimization step: 4790. Total energy = 3994.1867 kcal/mol (3986.2634 without restraints) Performing minimization step: 4791. Total energy = 3993.7772 kcal/mol (3985.8552 without restraints) Performing minimization step: 4792. Total energy = 3993.3681 kcal/mol (3985.4473 without restraints) Performing minimization step: 4793. Total energy = 3992.9591 kcal/mol (3985.0394 without restraints) Performing minimization step: 4794. Total energy = 3992.5507 kcal/mol (3984.6323 without restraints) Performing minimization step: 4795. Total energy = 3992.1427 kcal/mol (3984.2257 without restraints) Performing minimization step: 4796. Total energy = 3991.7352 kcal/mol (3983.8191 without restraints) Performing minimization step: 4797. Total energy = 3991.3277 kcal/mol (3983.4129 without restraints) Performing minimization step: 4798. Total energy = 3990.9205 kcal/mol (3983.0068 without restraints) Performing minimization step: 4799. Total energy = 3990.5134 kcal/mol (3982.6010 without restraints) Performing minimization step: 4800. Total energy = 3990.1069 kcal/mol (3982.1956 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4801. Total energy = 3989.7007 kcal/mol (3981.7907 without restraints) Performing minimization step: 4802. Total energy = 3989.2945 kcal/mol (3981.3857 without restraints) Performing minimization step: 4803. Total energy = 3988.8887 kcal/mol (3980.9811 without restraints) Performing minimization step: 4804. Total energy = 3988.4834 kcal/mol (3980.5773 without restraints) Performing minimization step: 4805. Total energy = 3988.0783 kcal/mol (3980.1731 without restraints) Performing minimization step: 4806. Total energy = 3987.6740 kcal/mol (3979.7699 without restraints) Performing minimization step: 4807. Total energy = 3987.2687 kcal/mol (3979.3658 without restraints) Performing minimization step: 4808. Total energy = 3986.8641 kcal/mol (3978.9625 without restraints) Performing minimization step: 4809. Total energy = 3986.4604 kcal/mol (3978.5600 without restraints) Performing minimization step: 4810. Total energy = 3986.0570 kcal/mol (3978.1578 without restraints) Performing minimization step: 4811. Total energy = 3985.6535 kcal/mol (3977.7555 without restraints) Performing minimization step: 4812. Total energy = 3985.2502 kcal/mol (3977.3533 without restraints) Performing minimization step: 4813. Total energy = 3984.8476 kcal/mol (3976.9520 without restraints) Performing minimization step: 4814. Total energy = 3984.4451 kcal/mol (3976.5506 without restraints) Performing minimization step: 4815. Total energy = 3984.0428 kcal/mol (3976.1495 without restraints) Performing minimization step: 4816. Total energy = 3983.6408 kcal/mol (3975.7487 without restraints) Performing minimization step: 4817. Total energy = 3983.2395 kcal/mol (3975.3486 without restraints) Performing minimization step: 4818. Total energy = 3982.8382 kcal/mol (3974.9485 without restraints) Performing minimization step: 4819. Total energy = 3982.4374 kcal/mol (3974.5489 without restraints) Performing minimization step: 4820. Total energy = 3982.0364 kcal/mol (3974.1491 without restraints) Performing minimization step: 4821. Total energy = 3981.6359 kcal/mol (3973.7499 without restraints) Performing minimization step: 4822. Total energy = 3981.2362 kcal/mol (3973.3513 without restraints) Performing minimization step: 4823. Total energy = 3980.8368 kcal/mol (3972.9531 without restraints) Performing minimization step: 4824. Total energy = 3980.4373 kcal/mol (3972.5548 without restraints) Performing minimization step: 4825. Total energy = 3980.0387 kcal/mol (3972.1573 without restraints) Performing minimization step: 4826. Total energy = 3979.6395 kcal/mol (3971.7594 without restraints) Performing minimization step: 4827. Total energy = 3979.2405 kcal/mol (3971.3616 without restraints) Performing minimization step: 4828. Total energy = 3978.8421 kcal/mol (3970.9644 without restraints) Performing minimization step: 4829. Total energy = 3978.4438 kcal/mol (3970.5673 without restraints) Performing minimization step: 4830. Total energy = 3978.0460 kcal/mol (3970.1707 without restraints) Performing minimization step: 4831. Total energy = 3977.6490 kcal/mol (3969.7749 without restraints) Performing minimization step: 4832. Total energy = 3977.2519 kcal/mol (3969.3791 without restraints) Performing minimization step: 4833. Total energy = 3976.8548 kcal/mol (3968.9831 without restraints) Performing minimization step: 4834. Total energy = 3976.4579 kcal/mol (3968.5874 without restraints) Performing minimization step: 4835. Total energy = 3976.0615 kcal/mol (3968.1921 without restraints) Performing minimization step: 4836. Total energy = 3975.6651 kcal/mol (3967.7970 without restraints) Performing minimization step: 4837. Total energy = 3975.2691 kcal/mol (3967.4021 without restraints) Performing minimization step: 4838. Total energy = 3974.8743 kcal/mol (3967.0086 without restraints) Performing minimization step: 4839. Total energy = 3974.4789 kcal/mol (3966.6143 without restraints) Performing minimization step: 4840. Total energy = 3974.0841 kcal/mol (3966.2208 without restraints) Performing minimization step: 4841. Total energy = 3973.6890 kcal/mol (3965.8268 without restraints) Performing minimization step: 4842. Total energy = 3973.2948 kcal/mol (3965.4338 without restraints) Performing minimization step: 4843. Total energy = 3972.9006 kcal/mol (3965.0409 without restraints) Performing minimization step: 4844. Total energy = 3972.5069 kcal/mol (3964.6483 without restraints) Performing minimization step: 4845. Total energy = 3972.1133 kcal/mol (3964.2559 without restraints) Performing minimization step: 4846. Total energy = 3971.7202 kcal/mol (3963.8640 without restraints) Performing minimization step: 4847. Total energy = 3971.3270 kcal/mol (3963.4720 without restraints) Performing minimization step: 4848. Total energy = 3970.9341 kcal/mol (3963.0803 without restraints) Performing minimization step: 4849. Total energy = 3970.5417 kcal/mol (3962.6891 without restraints) Performing minimization step: 4850. Total energy = 3970.1496 kcal/mol (3962.2982 without restraints) Performing minimization step: 4851. Total energy = 3969.7580 kcal/mol (3961.9078 without restraints) Performing minimization step: 4852. Total energy = 3969.3663 kcal/mol (3961.5173 without restraints) Performing minimization step: 4853. Total energy = 3968.9753 kcal/mol (3961.1276 without restraints) Performing minimization step: 4854. Total energy = 3968.5842 kcal/mol (3960.7376 without restraints) Performing minimization step: 4855. Total energy = 3968.1931 kcal/mol (3960.3476 without restraints) Performing minimization step: 4856. Total energy = 3967.8024 kcal/mol (3959.9581 without restraints) Performing minimization step: 4857. Total energy = 3967.4121 kcal/mol (3959.5692 without restraints) Performing minimization step: 4858. Total energy = 3967.0223 kcal/mol (3959.1805 without restraints) Performing minimization step: 4859. Total energy = 3966.6328 kcal/mol (3958.7922 without restraints) Performing minimization step: 4860. Total energy = 3966.2435 kcal/mol (3958.4041 without restraints) Performing minimization step: 4861. Total energy = 3965.8544 kcal/mol (3958.0163 without restraints) Performing minimization step: 4862. Total energy = 3965.4656 kcal/mol (3957.6285 without restraints) Performing minimization step: 4863. Total energy = 3965.0770 kcal/mol (3957.2412 without restraints) Performing minimization step: 4864. Total energy = 3964.6886 kcal/mol (3956.8540 without restraints) Performing minimization step: 4865. Total energy = 3964.3009 kcal/mol (3956.4675 without restraints) Performing minimization step: 4866. Total energy = 3963.9132 kcal/mol (3956.0810 without restraints) Performing minimization step: 4867. Total energy = 3963.5266 kcal/mol (3955.6955 without restraints) Performing minimization step: 4868. Total energy = 3963.1398 kcal/mol (3955.3101 without restraints) Performing minimization step: 4869. Total energy = 3962.7532 kcal/mol (3954.9245 without restraints) Performing minimization step: 4870. Total energy = 3962.3669 kcal/mol (3954.5396 without restraints) Performing minimization step: 4871. Total energy = 3961.9809 kcal/mol (3954.1546 without restraints) Performing minimization step: 4872. Total energy = 3961.5948 kcal/mol (3953.7697 without restraints) Performing minimization step: 4873. Total energy = 3961.2094 kcal/mol (3953.3855 without restraints) Performing minimization step: 4874. Total energy = 3960.8240 kcal/mol (3953.0013 without restraints) Performing minimization step: 4875. Total energy = 3960.4392 kcal/mol (3952.6178 without restraints) Performing minimization step: 4876. Total energy = 3960.0544 kcal/mol (3952.2342 without restraints) Performing minimization step: 4877. Total energy = 3959.6701 kcal/mol (3951.8510 without restraints) Performing minimization step: 4878. Total energy = 3959.2862 kcal/mol (3951.4683 without restraints) Performing minimization step: 4879. Total energy = 3958.9026 kcal/mol (3951.0860 without restraints) Performing minimization step: 4880. Total energy = 3958.5188 kcal/mol (3950.7032 without restraints) Performing minimization step: 4881. Total energy = 3958.1349 kcal/mol (3950.3206 without restraints) Performing minimization step: 4882. Total energy = 3957.7517 kcal/mol (3949.9385 without restraints) Performing minimization step: 4883. Total energy = 3957.3685 kcal/mol (3949.5565 without restraints) Performing minimization step: 4884. Total energy = 3956.9854 kcal/mol (3949.1747 without restraints) Performing minimization step: 4885. Total energy = 3956.6029 kcal/mol (3948.7933 without restraints) Performing minimization step: 4886. Total energy = 3956.2204 kcal/mol (3948.4120 without restraints) Performing minimization step: 4887. Total energy = 3955.8388 kcal/mol (3948.0316 without restraints) Performing minimization step: 4888. Total energy = 3955.4575 kcal/mol (3947.6516 without restraints) Performing minimization step: 4889. Total energy = 3955.0761 kcal/mol (3947.2713 without restraints) Performing minimization step: 4890. Total energy = 3954.6952 kcal/mol (3946.8916 without restraints) Performing minimization step: 4891. Total energy = 3954.3145 kcal/mol (3946.5122 without restraints) Performing minimization step: 4892. Total energy = 3953.9341 kcal/mol (3946.1328 without restraints) Performing minimization step: 4893. Total energy = 3953.5538 kcal/mol (3945.7537 without restraints) Performing minimization step: 4894. Total energy = 3953.1738 kcal/mol (3945.3750 without restraints) Performing minimization step: 4895. Total energy = 3952.7942 kcal/mol (3944.9966 without restraints) Performing minimization step: 4896. Total energy = 3952.4156 kcal/mol (3944.6193 without restraints) Performing minimization step: 4897. Total energy = 3952.0369 kcal/mol (3944.2416 without restraints) Performing minimization step: 4898. Total energy = 3951.6576 kcal/mol (3943.8636 without restraints) Performing minimization step: 4899. Total energy = 3951.2789 kcal/mol (3943.4861 without restraints) Performing minimization step: 4900. Total energy = 3950.9012 kcal/mol (3943.1095 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. Performing minimization step: 4901. Total energy = 3950.5230 kcal/mol (3942.7325 without restraints) Performing minimization step: 4902. Total energy = 3950.1451 kcal/mol (3942.3558 without restraints) Performing minimization step: 4903. Total energy = 3949.7677 kcal/mol (3941.9796 without restraints) Performing minimization step: 4904. Total energy = 3949.3906 kcal/mol (3941.6038 without restraints) Performing minimization step: 4905. Total energy = 3949.0140 kcal/mol (3941.2283 without restraints) Performing minimization step: 4906. Total energy = 3948.6373 kcal/mol (3940.8530 without restraints) Performing minimization step: 4907. Total energy = 3948.2608 kcal/mol (3940.4775 without restraints) Performing minimization step: 4908. Total energy = 3947.8847 kcal/mol (3940.1026 without restraints) Performing minimization step: 4909. Total energy = 3947.5096 kcal/mol (3939.7287 without restraints) Performing minimization step: 4910. Total energy = 3947.1343 kcal/mol (3939.3545 without restraints) Performing minimization step: 4911. Total energy = 3946.7591 kcal/mol (3938.9807 without restraints) Performing minimization step: 4912. Total energy = 3946.3841 kcal/mol (3938.6067 without restraints) Performing minimization step: 4913. Total energy = 3946.0095 kcal/mol (3938.2335 without restraints) Performing minimization step: 4914. Total energy = 3945.6350 kcal/mol (3937.8600 without restraints) Performing minimization step: 4915. Total energy = 3945.2608 kcal/mol (3937.4871 without restraints) Performing minimization step: 4916. Total energy = 3944.8869 kcal/mol (3937.1143 without restraints) Performing minimization step: 4917. Total energy = 3944.5132 kcal/mol (3936.7418 without restraints) Performing minimization step: 4918. Total energy = 3944.1396 kcal/mol (3936.3695 without restraints) Performing minimization step: 4919. Total energy = 3943.7662 kcal/mol (3935.9972 without restraints) Performing minimization step: 4920. Total energy = 3943.3934 kcal/mol (3935.6256 without restraints) Performing minimization step: 4921. Total energy = 3943.0211 kcal/mol (3935.2546 without restraints) Performing minimization step: 4922. Total energy = 3942.6489 kcal/mol (3934.8835 without restraints) Performing minimization step: 4923. Total energy = 3942.2765 kcal/mol (3934.5123 without restraints) Performing minimization step: 4924. Total energy = 3941.9050 kcal/mol (3934.1420 without restraints) Performing minimization step: 4925. Total energy = 3941.5339 kcal/mol (3933.7721 without restraints) Performing minimization step: 4926. Total energy = 3941.1627 kcal/mol (3933.4021 without restraints) Performing minimization step: 4927. Total energy = 3940.7918 kcal/mol (3933.0323 without restraints) Performing minimization step: 4928. Total energy = 3940.4208 kcal/mol (3932.6626 without restraints) Performing minimization step: 4929. Total energy = 3940.0507 kcal/mol (3932.2938 without restraints) Performing minimization step: 4930. Total energy = 3939.6806 kcal/mol (3931.9247 without restraints) Performing minimization step: 4931. Total energy = 3939.3105 kcal/mol (3931.5558 without restraints) Performing minimization step: 4932. Total energy = 3938.9410 kcal/mol (3931.1875 without restraints) Performing minimization step: 4933. Total energy = 3938.5717 kcal/mol (3930.8194 without restraints) Performing minimization step: 4934. Total energy = 3938.2028 kcal/mol (3930.4519 without restraints) Performing minimization step: 4935. Total energy = 3937.8341 kcal/mol (3930.0843 without restraints) Performing minimization step: 4936. Total energy = 3937.4659 kcal/mol (3929.7173 without restraints) Performing minimization step: 4937. Total energy = 3937.0978 kcal/mol (3929.3503 without restraints) Performing minimization step: 4938. Total energy = 3936.7300 kcal/mol (3928.9838 without restraints) Performing minimization step: 4939. Total energy = 3936.3626 kcal/mol (3928.6177 without restraints) Performing minimization step: 4940. Total energy = 3935.9950 kcal/mol (3928.2512 without restraints) Performing minimization step: 4941. Total energy = 3935.6277 kcal/mol (3927.8851 without restraints) Performing minimization step: 4942. Total energy = 3935.2606 kcal/mol (3927.5191 without restraints) Performing minimization step: 4943. Total energy = 3934.8937 kcal/mol (3927.1534 without restraints) Performing minimization step: 4944. Total energy = 3934.5269 kcal/mol (3926.7878 without restraints) Performing minimization step: 4945. Total energy = 3934.1608 kcal/mol (3926.4230 without restraints) Performing minimization step: 4946. Total energy = 3933.7949 kcal/mol (3926.0582 without restraints) Performing minimization step: 4947. Total energy = 3933.4293 kcal/mol (3925.6938 without restraints) Performing minimization step: 4948. Total energy = 3933.0641 kcal/mol (3925.3298 without restraints) Performing minimization step: 4949. Total energy = 3932.6987 kcal/mol (3924.9656 without restraints) Performing minimization step: 4950. Total energy = 3932.3335 kcal/mol (3924.6015 without restraints) Performing minimization step: 4951. Total energy = 3931.9686 kcal/mol (3924.2379 without restraints) Performing minimization step: 4952. Total energy = 3931.6041 kcal/mol (3923.8746 without restraints) Performing minimization step: 4953. Total energy = 3931.2403 kcal/mol (3923.5121 without restraints) Performing minimization step: 4954. Total energy = 3930.8767 kcal/mol (3923.1495 without restraints) Performing minimization step: 4955. Total energy = 3930.5131 kcal/mol (3922.7872 without restraints) Performing minimization step: 4956. Total energy = 3930.1498 kcal/mol (3922.4251 without restraints) Performing minimization step: 4957. Total energy = 3929.7868 kcal/mol (3922.0633 without restraints) Performing minimization step: 4958. Total energy = 3929.4242 kcal/mol (3921.7019 without restraints) Performing minimization step: 4959. Total energy = 3929.0616 kcal/mol (3921.3406 without restraints) Performing minimization step: 4960. Total energy = 3928.6994 kcal/mol (3920.9795 without restraints) Performing minimization step: 4961. Total energy = 3928.3375 kcal/mol (3920.6187 without restraints) Performing minimization step: 4962. Total energy = 3927.9757 kcal/mol (3920.2582 without restraints) Performing minimization step: 4963. Total energy = 3927.6152 kcal/mol (3919.8988 without restraints) Performing minimization step: 4964. Total energy = 3927.2538 kcal/mol (3919.5387 without restraints) Performing minimization step: 4965. Total energy = 3926.8927 kcal/mol (3919.1787 without restraints) Performing minimization step: 4966. Total energy = 3926.5319 kcal/mol (3918.8191 without restraints) Performing minimization step: 4967. Total energy = 3926.1715 kcal/mol (3918.4599 without restraints) Performing minimization step: 4968. Total energy = 3925.8117 kcal/mol (3918.1015 without restraints) Performing minimization step: 4969. Total energy = 3925.4520 kcal/mol (3917.7428 without restraints) Performing minimization step: 4970. Total energy = 3925.0921 kcal/mol (3917.3841 without restraints) Performing minimization step: 4971. Total energy = 3924.7326 kcal/mol (3917.0258 without restraints) Performing minimization step: 4972. Total energy = 3924.3735 kcal/mol (3916.6679 without restraints) Performing minimization step: 4973. Total energy = 3924.0145 kcal/mol (3916.3101 without restraints) Performing minimization step: 4974. Total energy = 3923.6559 kcal/mol (3915.9527 without restraints) Performing minimization step: 4975. Total energy = 3923.2973 kcal/mol (3915.5953 without restraints) Performing minimization step: 4976. Total energy = 3922.9393 kcal/mol (3915.2385 without restraints) Performing minimization step: 4977. Total energy = 3922.5814 kcal/mol (3914.8819 without restraints) Performing minimization step: 4978. Total energy = 3922.2242 kcal/mol (3914.5256 without restraints) Performing minimization step: 4979. Total energy = 3921.8667 kcal/mol (3914.1696 without restraints) Performing minimization step: 4980. Total energy = 3921.5097 kcal/mol (3913.8138 without restraints) Performing minimization step: 4981. Total energy = 3921.1532 kcal/mol (3913.4585 without restraints) Performing minimization step: 4982. Total energy = 3920.7966 kcal/mol (3913.1030 without restraints) Performing minimization step: 4983. Total energy = 3920.4404 kcal/mol (3912.7480 without restraints) Performing minimization step: 4984. Total energy = 3920.0840 kcal/mol (3912.3928 without restraints) Performing minimization step: 4985. Total energy = 3919.7282 kcal/mol (3912.0382 without restraints) Performing minimization step: 4986. Total energy = 3919.3731 kcal/mol (3911.6843 without restraints) Performing minimization step: 4987. Total energy = 3919.0176 kcal/mol (3911.3300 without restraints) Performing minimization step: 4988. Total energy = 3918.6624 kcal/mol (3910.9761 without restraints) Performing minimization step: 4989. Total energy = 3918.3077 kcal/mol (3910.6225 without restraints) Performing minimization step: 4990. Total energy = 3917.9532 kcal/mol (3910.2692 without restraints) Performing minimization step: 4991. Total energy = 3917.5988 kcal/mol (3909.9161 without restraints) Performing minimization step: 4992. Total energy = 3917.2448 kcal/mol (3909.5632 without restraints) Performing minimization step: 4993. Total energy = 3916.8911 kcal/mol (3909.2107 without restraints) Performing minimization step: 4994. Total energy = 3916.5374 kcal/mol (3908.8582 without restraints) Performing minimization step: 4995. Total energy = 3916.1841 kcal/mol (3908.5062 without restraints) Performing minimization step: 4996. Total energy = 3915.8308 kcal/mol (3908.1540 without restraints) Performing minimization step: 4997. Total energy = 3915.4784 kcal/mol (3907.8030 without restraints) Performing minimization step: 4998. Total energy = 3915.1264 kcal/mol (3907.4519 without restraints) Performing minimization step: 4999. Total energy = 3914.7742 kcal/mol (3907.1010 without restraints) Performing minimization step: 5000. Total energy = 3914.4223 kcal/mol (3906.7503 without restraints) Writing PDB file: /home/ubuntu/rna-tools/rna_tools/tools/webserver-engine/media/jobs/fafeb614/tmp/CPMB1_refx/CPMB1_refx.pdb ...Done. /home/ubuntu/rna-tools//opt/qrnas/ Save to CPMB1_refx.pdb DONE!