Analysis with X3DNA

files from another job e.g., 614e0a1b


The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.


"Analysis with X3DNA” provides various detailed statistics for PDB files such as a list of RNA elements (helixes, stems, motifs, nucleotide modifications) and configuration of base pairs.

Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res. 31(17), 5108-21.

X3DNA v3.0beta 2013

We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations.

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