Analysis with X3DNA

Fetch files from another job e.g., 614e0a1b

RNA structure (in the PDB format)
Please, remove all spaces and non-standard characters in filenames, we're working on a fix to do it automatically for you

Run!

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.

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Documentation

"Analysis with X3DNA” provides various detailed statistics for PDB files such as a list of RNA elements (helixes, stems, motifs, nucleotide modifications) and configuration of base pairs.

X.-J. Lu, H. J. Bussemaker, and W. K. Olson, “DSSR: an integrated software tool for dissecting the spatial structure of RNA.,” Nucleic Acids Research, vol. 43, no. 21, p. e142, Dec. 2015.

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