Analysis with X3DNA

files from another job e.g., 614e0a1b

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.


"Analysis with X3DNA” provides various detailed statistics for PDB files such as a list of RNA elements (helixes, stems, motifs, nucleotide modifications) and configuration of base pairs.

X.-J. Lu, H. J. Bussemaker, and W. K. Olson, “DSSR: an integrated software tool for dissecting the spatial structure of RNA.,” Nucleic Acids Research, vol. 43, no. 21, p. e142, Dec. 2015.

We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations.
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