rna-tools.online

RNA 3D model quality assessment

files from another job e.g., 614e0a1b

RNA structure (in the PDB format)
Please, remove all spaces and non-standard characters in filenames, we're working on a fix to do it automatically for you

The csv with scores sorted from the best to the worst can be found here: for RASP rasp_sorted_rasp_all.csv and Dfire dfire_sorted_dfire.csv

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.

Documentation

For now, RASP and Dfire methods are available. More to come soon. The "mq_sorted_rasp_all.csv" file contains scores sorted, the lowest score the model is more RNA-like (better).

E. Capriotti, T. Norambuena, M. A. Marti-Renom, and F. Melo, “All-atom knowledge-based potential for RNA structure prediction and assessment.,” Bioinformatics, vol. 27, no. 8, pp. 1086–1093, Apr. 2011.

We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations.

Please write to us if there is any problem with your job mail us [behind Apple Hide My Mail].