files from another job e.g., 614e0a1b
target: filename of file to be used as the reference, if empty the first file dropped will be used
The INF csv output file can be found here inf.csv
rna_calc_infs.py - a tool to calc inf_all (INF of all interactions), inf_stack (INF for stacking interaction), inf_WC (INF for Watson-Crick interactions), inf_nWC (INF for non-Watson-Crick interactions), SNS_WC (sensitivity for Watson-Crick interactions), PPV_WC (positive predictive values for Watson-Crick interactions), SNS_nWC (sensitivity for non-Watson-Crick interactions), PPV_nWC (positive predictive values for non-Watson-Crick) interactions between two structures (or one vs more)
If you still have problem with various number of atoms, check out this issue: get_rnapuzzle_ready see Tools
target fn inf_all inf_stack inf_WC inf_nWC sns_WC ppv_WC sns_nWC ppv_nWC 21_3dRNA_1_rpr.pdb 21_ChenHighLig_1_rpr.pdb 0.64 0.65 0.6 0.58 1.0 0.36 1.0 0.33 21_3dRNA_1_rpr.pdb 21_Adamiak_1_rpr.pdb 0.59 0.59 0.6 0.71 1.0 0.36 1.0 0.5 21_3dRNA_1_rpr.pdb 21_Das_1_rpr.pdb 0.57 0.62 0.6 0.3 1.0 0.36 1.0 0.09
T. Waleń, G. Chojnowski, P. Gierski, and J. M. Bujnicki, “ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.,” Nucleic Acids Research, vol. 42, no. 19, pp. e151–e151, Oct. 2014.
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