Documentation

rna_calc_infs.py - a tool to calc inf_all (INF of all interactions), inf_stack (INF for stacking interaction), inf_WC (INF for Watson-Crick interactions), inf_nWC (INF for non-Watson-Crick interactions), SNS_WC (sensitivity for Watson-Crick interactions), PPV_WC (positive predictive values for Watson-Crick interactions), SNS_nWC (sensitivity for non-Watson-Crick interactions), PPV_nWC (positive predictive values for non-Watson-Crick) interactions between two structures (or one vs more)

If you still have problem with various number of atoms, check out this issue: get_rnapuzzle_ready see Tools

target              fn                        inf_all  inf_stack  inf_WC  inf_nWC  sns_WC  ppv_WC  sns_nWC  ppv_nWC
21_3dRNA_1_rpr.pdb  21_ChenHighLig_1_rpr.pdb  0.64     0.65       0.6     0.58     1.0     0.36    1.0      0.33
21_3dRNA_1_rpr.pdb  21_Adamiak_1_rpr.pdb      0.59     0.59       0.6     0.71     1.0     0.36    1.0      0.5
21_3dRNA_1_rpr.pdb  21_Das_1_rpr.pdb          0.57     0.62       0.6     0.3      1.0     0.36    1.0      0.09

T. Waleń, G. Chojnowski, P. Gierski, and J. M. Bujnicki, “ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.,” Nucleic Acids Research, vol. 42, no. 19, pp. e151–e151, Oct. 2014.

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