rna-tools.online
Contacts (Interactions) classification
files from another job e.g., 614e0a1b
The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.
Here, the first file (21_3dRNA_1_rpr.pdb) has small number of detected interactions. This is a suggestion that this structure is not folded properly.
21_3dRNA_1_rpr.pdb Classifier: Clarna chains: A 1 41 A 1 A 24 bp C G WW_cis 0.9184 A 2 A 23 bp C G WW_cis 0.8763 A 3 A 22 bp G C WW_cis 0.8950 A 4 A 21 bp G C WW_cis 0.8362 A 39 A 40 bp C G SH_cis 0.6261 21_Adamiak_1_rpr.pdb Classifier: Clarna chains: A 1 41 A 1 A 24 bp C G WW_cis 0.8733 A 2 A 23 bp C G WW_cis 0.8887 A 3 A 22 bp G C WW_cis 0.8160 A 4 A 21 bp G C WW_cis 0.7943 A 7 A 35 bp G A WH_cis 0.7501 A 12 A 41 bp G C WW_cis 0.8723 A 13 A 40 bp C G WW_cis 0.8931 A 14 A 39 bp G C WW_cis 0.8983 A 15 A 38 bp C G WW_cis 0.8815 A 16 A 37 bp C G WW_cis 0.8938 A 17 A 36 bp G C WW_cis 0.9300 A 18 A 35 bp U A WW_cis 0.8766
T. Waleń, G. Chojnowski, P. Gierski, and J. M. Bujnicki, “ClaRNA: a classifier of contacts in RNA 3D structures based on a comparative analysis of various classification schemes.,” Nucleic Acids Research, vol. 42, no. 19, pp. e151–e151, Oct. 2014.
We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations. Please write to us if there is any problem with your job mail us [behind Apple Hide My Mail]. You can also write an empty mail to sign to our Google Group to ask questions and shape the tools! Join our Google Group or write an empty e-mail to rna-tools+subscribe@googlegroups.com.