rna-tools.online

Standarize PDB files for Molecular Dynamics

files from another job e.g., 614e0a1b

Clean up a structure, get current order of atoms.

This is also the submission format required for OpenMM.

RNA structure (in the PDB format)
Please, remove all spaces and non-standard characters in filenames, we're working on a fix to do it automatically for you renumber residues

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.

Documentation

This is almost the same as "Standardize your PDB files" with option to remove starting OP3 atoms.

We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations.

Please write to us if there is any problem with your job mail us [behind Apple Hide My Mail].