Standardize your PDB files

Get rnapuzzle ready structure. Clean up a structure, get standardized order of atoms. This is also the submission format required for the RNA Puzzles.

Fetch files from another job e.g., 614e0a1b

RNA structure (in the PDB format)
Please, remove all spaces and non-standard characters in filenames, we're working on a fix to do it automatically for you

renumber residues

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.

Run!

Documentation

Demo files "missing_op1op2_r43OK.pdb", applied fix "- add the missing OP1 and OP2 in chain: A residue # 44", chains are renamed to ABC, renumber residues if you want with the checkbox.

We are exploring using https://piwik.pro to track usage of the server for grant proposals, scientific presentations.

Please write to us if there is any problem with your job mail us [behind Apple Hide My Mail].