rna-tools.online

Get secondary structures

files from another job e.g., 614e0a1b

RNA structure (in the PDB format)
Please, remove all spaces and non-standard characters in filenames, we're working on a fix to do it automatically for you

The raw output files for each step of the pipeline can be found here and downloaded as a ZIP file here.

Documentation

Get sequence in dot-bracket notation for the secondary structure:

21_3dRNA_1_rpr.pdb
((((...............))))................
21_Adamiak_1_rpr.pdb
((((.......[[[[[[[..))))..........]]]]]]]

X.-J. Lu, H. J. Bussemaker, and W. K. Olson, “DSSR: an integrated software tool for dissecting the spatial structure of RNA.,” Nucleic Acids Research, vol. 43, no. 21, p. e142, Dec. 2015.

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